diff --git a/src/metrics/ks_statistic_sc_features/script.R b/src/metrics/ks_statistic_sc_features/script.R index 1747a7a..bac3072 100644 --- a/src/metrics/ks_statistic_sc_features/script.R +++ b/src/metrics/ks_statistic_sc_features/script.R @@ -8,7 +8,7 @@ requireNamespace("CARD", quietly = TRUE) requireNamespace("SingleCellExperiment", quietly = TRUE) requireNamespace("SummarizedExperiment", quietly = TRUE) -<<<<<<< Updated upstream +# <<<<<<< Updated upstream ## VIASH START par <- list( input_spatial_dataset = "resources_test/spatialsimbench_mobnew/dataset_sp.h5ad", @@ -48,7 +48,7 @@ real_log_count <- t(input_real_sp$layers[["logcounts"]]) real_prob_matrix <- input_real_sp$obsm[["celltype_proportions"]] colnames(real_prob_matrix) <- paste0("ct", seq_len(ncol(real_prob_matrix))) -<<<<<<< Updated upstream +# <<<<<<< Updated upstream sim_log_count <- scuttle::normalizeCounts(t(input_simulated_sp$layers[["counts"]])) ======= real_log_count <- real_log_count[ , colnames(real_log_count) %in% rownames(real_prob_matrix) ]