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[REVIEW]: Qiskit Dynamics: A Python package for simulating the time dynamics of quantum systems #5853
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👋 @babreu-ncsa, @goerz, @hodgestar - Thanks for agreeing to review this submission. As you can see above, you each should use the command As you go over the submission, please check any items that you feel have been satisfied. There are also links to the JOSS reviewer guidelines. The JOSS review is different from most other journals. Our goal is to work with the authors to help them meet our criteria instead of merely passing judgment on the submission. As such, reviewers are encouraged to submit issues and pull requests on the software repository. When doing so, please mention We aim for reviews to be completed within about 2-4 weeks. Please let me know if either of you require some more time. We can also use editorialbot (our bot) to set automatic reminders if you know you'll be away for a known period of time. Please feel free to ping me (@danielskatz) if you have any questions/concerns. |
Review checklist for @goerzConflict of interest
Code of Conduct
General checks
Functionality
Documentation
Software paper
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Review checklist for @hodgestarConflict of interest
Code of Conduct
General checks
Functionality
Documentation
Software paper
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@babreu-ncsa - can you generate your checklist too, and at least check off the conflict of interest and code of conduct items, to make sure things are working? |
Review checklist for @babreu-ncsaConflict of interest
Code of Conduct
General checks
Functionality
Documentation
Software paper
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The paper and underlying software package are of exemplary quality. I have no objections to publication, up to two trivial "typo" issues in the manuscript (which is why I've left the "Quality of writing" and "References" unchecked for now). qiskit-community/qiskit-dynamics#261 Edit: The issues have been resolved, so the paper is good to go, as far as I'm concerned. |
@editorialbot generate pdf |
Thanks @goerz ! |
👋 @babreu-ncsa and @hodgestar - how are your reviews coming? Is there anything blocking your progress I can help with? |
@danielskatz thanks for the reminder. Sorry for the delay, I returned this week from back-to-back conferences. I'll get the review done within the next week. |
@editorialbot generate pdf |
There are some issues with installing the package along with JAX for OSX + Apple Silicon that may be worth a note in the Installation section of the repo's README, although they are related to JAX and not necessarily Qiskit-Dynamics... I'll let the authors decide what to do and mark the installation check box.
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There is just one thing blocking me from completing the review (everything else is great and I'm able to reproduce what's in the tutorials): Automated tests: Are there automated tests or manual steps described so that the functionality of the software can be verified? I see there are tests in the repository (https://github.com/Qiskit-Extensions/qiskit-dynamics/tree/main/test), but it's not clear to me when these are run and if they can be triggered manually by the user. (I don't mean to be lengthy in this thread but also don't think this is worth opening an issue). |
@babreu-ncsa They do run automatically via the You can run them locally using |
@DanPuzzuoli - I've suggested some minor changes in qiskit-community/qiskit-dynamics#276 Please merge this, or let me know what you disagree with, then we can proceed to acceptance and publication. |
@editorialbot recommend-accept |
Paper is not ready for acceptance yet, the archive is missing |
@DanPuzzuoli - At this point could you:
I can then move forward with accepting the submission. |
@goerz @hodgestar @babreu-ncsa thank you for your reviews, and thank you @danielskatz for editing! @danielskatz I plan to make a minor change to documentation based on a suggestion by @hodgestar here that was not a blocker on their review. Aside from this, there will have been no changes made based on the reviews. Is it okay if I just stick with the latest tagged version for the archiving (0.4.2, which is what the reviewers used for review) and have this change included in the next natural release? I wouldn't normally make a new release solely for a change like this, and it'd be nice to conclude the process for the paper. |
yes, that's fine |
@DanPuzzuoli thanks for writing good software and making it open-source :) |
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@editorialbot set 0.4.2 as version |
Done! version is now 0.4.2 |
@editorialbot set 10.5281/zenodo.10034642 as archive |
Done! archive is now 10.5281/zenodo.10034642 |
@editorialbot recommend-accept |
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👋 @openjournals/csism-eics, this paper is ready to be accepted and published. Check final proof 👉📄 Download article If the paper PDF and the deposit XML files look good in openjournals/joss-papers#4719, then you can now move forward with accepting the submission by compiling again with the command |
@editorialbot accept |
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Congratulations to @DanPuzzuoli (Daniel Puzzuoli) and co-authors on your publication!! And thanks to @babreu-ncsa, @goerz, and @hodgestar for reviewing! |
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Submitting author: @DanPuzzuoli (Daniel Puzzuoli)
Repository: https://github.com/Qiskit-Extensions/qiskit-dynamics
Branch with paper.md (empty if default branch): paper
Version: 0.4.2
Editor: @danielskatz
Reviewers: @babreu-ncsa, @goerz, @hodgestar
Archive: 10.5281/zenodo.10034642
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