Which version of depinfo is required?

[MGSS7]

After installing memote 0.14.0 and required packages, I get the error message: ImportError: cannot import name 'get_pkg_info' from 'depinfo' and then the specific path to results.py.

When looking in the depinfo documentation, I can see that the function 'get_pkg_info', was only used in version 1.0.3. When installing this packages other packages like cobra and Escher crashes.

I have come around the problem by manually altering in the results.py file (found in ~/anaconda3/envs/cobra_escher/lib/python3.7/site-packages/memote/suite/results).

However there must be another way to solve this problem?

---

Package Information

memote 0.14.0

Dependency Information

black 23.3.0
click 8.1.7
click-configfile 0.2.3
click-log 0.4.0
cobra 0.22.0
cookiecutter 2.4.0
depinfo 2.2.0
future 0.18.3
gitpython 3.1.40
goodtables 2.5.4
importlib-resources 5.12.0
isort 5.11.5
jinja2 3.1.2
numpydoc 1.5.0
pandas 1.3.5
pylru 1.2.1
pytest 4.6.11
requests 2.31.0
ruamel.yaml 0.17.40
six 1.16.0
sqlalchemy 2.0.22
sympy 1.10.1
tox 4.8.0
travis-encrypt 1.1.2

Build Tools Information

pip 22.3.1
setuptools 65.6.3
wheel 0.38.4

Platform Information

Darwin 22.6.0-x86_64
CPython 3.7.16

[Midnighter]

I have an open pull request at cobrapy to update depinfo (opencobra/cobrapy#1361). After that, I can update memote.

For now, if you install depinfo<2, it should work for you.

[sulheim]

Did this work for you @MGSS7 ? I now get this error:

in <module>...
     from cobra.util.util import *
from depinfo.application import DisplayApplication
ModuleNotFoundError: No module named 'depinfo.application'

[MGSS7]

@sulheim yes, it did work! I installed the 1.7.0 version

[Midnighter]

@sulheim I just released a new version of cobrapy last night which includes depinfo>2. Next is a new memote version.

So for this to work right now, you need cobra<=0.27, depinfo<2, memote==0.14. I'll see about a new memote version tonight or in the next days.