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I can not upload a model to memote web site #746

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pkocabas80 opened this issue Jun 13, 2023 · 4 comments
Open

I can not upload a model to memote web site #746

pkocabas80 opened this issue Jun 13, 2023 · 4 comments

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@pkocabas80
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Problem description

Please explain:

  • I tried to upload a genome scale metabolic model in its sbml form to http://memote.io/,
    *However an error occured and i couldn't upload the model.
@matthiaskoenig
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Could you paste the exact error and if possible share the model to reproduce the issue.
Without more information it is difficult to debug the error.

@pkocabas80
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pkocabas80 commented Jun 14, 2023

Thank you for your reply.
Here is a model: https://www.ebi.ac.uk/biomodels/MODEL1612130000
Here is the web site:
image

@Midnighter
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Midnighter commented Jul 16, 2023

Dear @pkocabas80,

The memote service is currently down. I will contact @phantomas1234 to see if we can bring it back up. In the meantime, if you install memote in a Python environment, I am able to run

memote report snapshot MODEL1612130000_url.xml

without problems (lots of SBML warnings, though).

@phantomas1234
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@Midnighter looks like the Google cluster needs some API upgrades to be compatible with Kubernetes updates that were rolled out. I am not sure I'll be able to fix this as I am not really sure where to start with this 😢

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4 participants