NAMESPACE

# Generated by roxygen2: do not edit by hand

export(align.dataset.margins)
export(cluster_cn)
export(collapse_rows_of_matrix)
export(collate_ceres_results)
export(df.to.mat)
export(evaluate_prediction_auc)
export(fetchPAM)
export(generate_guides)
export(guideAlignments)
export(intersect_data_with_segment)
export(intersect_gene_with_copy_number)
export(intersect_guide_with_copy_number)
export(intersect_locus_with_cn_seg)
export(make.a.tidy.dataset)
export(map_guide_to_locus)
export(mat.to.df)
export(prepare_ceres_inputs)
export(read.gct)
export(read.gmt)
export(remove.cols.all.nas)
export(remove.cols.any.nas)
export(remove.rows.all.nas)
export(remove.rows.any.nas)
export(run_ceres)
export(run_precision_recall)
export(scale_to_essentials)
export(wrap_ceres)
export(write.gct)
import(GenomicRanges)
import(e1071)
import(magrittr)
import(readr)
import(stringr)
importFrom(BSgenome,getSeq)
importFrom(Biostrings,DNAStringSet)
importFrom(Biostrings,writeXStringSet)
importFrom(GenomeInfoDb,Seqinfo)
importFrom(Rcpp,sourceCpp)
importFrom(Rsamtools,scanBam)
importFrom(plyr,".")
importFrom(plyr,.)
importFrom(plyr,daply)
importFrom(plyr,laply)
importFrom(plyr,llply)
importFrom(rlang,"!!")
importFrom(rlang,enquo)
useDynLib(ceres)