cid_make_unitigs

#!/bin/bash

### clone, imprint && distribute
### make unitigs with base file name

for f in *.fa; do sed '1!{/^>/d;}' $f >"$f".1; done  ###delete all contig seperators after first
for i in *.1
do
 j=$(basename $i .fa.1)
 sed "s/>.*/>${j}/" $i > "$i".out
done    ###rename first contig to base filename