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LBD.yml
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LBD.yml
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name: LBD
channels:
- anaconda
- conda-forge/label/cf202003
- conda-forge/label/cf201901
- bioconda/label/cf201901
- conda-forge
- bioconda
- abinit
- matsci
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- _r-mutex=1.0.1=anacondar_1
- aioeasywebdav=2.4.0=py39hf3d152e_1001
- aiohttp=3.7.4=py39h3811e60_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- async-timeout=3.0.1=py_1000
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.0=pyhd8ed1ab_0
- attrs=20.3.0=pyhd3deb0d_0
- azure-common=1.1.27=pyhd8ed1ab_0
- azure-core=1.12.0=pyhd8ed1ab_0
- azure-storage-blob=12.8.1=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bamtools=2.5.1=h9a82719_9
- bbmap=38.90=he522d1c_1
- bcftools=1.3.1=ha92aebf_3
- bcrypt=3.2.0=py39h3811e60_1
- bedtools=2.30.0=h7d7f7ad_1
- blinker=1.4=py_1
- boto=2.49.0=py_0
- boto3=1.17.57=pyhd8ed1ab_0
- botocore=1.20.57=pyhd8ed1ab_0
- brotlipy=0.7.0=py39h3811e60_1001
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2024.2.2=hbcca054_0
- cachetools=4.2.1=pyhd8ed1ab_0
- cairo=1.16.0=hcf35c78_1003
- certifi=2024.2.2=pyhd8ed1ab_0
- cffi=1.14.5=py39he32792d_0
- chardet=4.0.0=py39hf3d152e_1
- click=7.1.2=pyh9f0ad1d_0
- coincbc=2.10.5=hcee13e7_1
- colorama=0.4.4=pyh9f0ad1d_0
- coloredlogs=15.0=py39hf3d152e_0
- colormath=3.0.0=py_2
- commonmark=0.9.1=py_0
- configargparse=1.4=pyhd8ed1ab_0
- cryptography=3.4.7=py39hbca0aa6_0
- cycler=0.10.0=py_2
- datrie=0.8.2=py39h07f9747_1
- decorator=5.0.7=pyhd8ed1ab_0
- deeptools=3.5.1=pyhdfd78af_1
- deeptoolsintervals=0.1.9=py39h38f01e4_3
- docutils=0.17.1=py39hf3d152e_0
- dropbox=11.7.0=pyhd8ed1ab_0
- expat=2.3.0=h9c3ff4c_0
- fastqc=0.11.9=hdfd78af_1
- fftw=3.3.9=nompi_h74d3f13_101
- filechunkio=1.8=py_2
- filelock=3.0.12=pyh9f0ad1d_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=2.001=hab24e00_0
- font-ttf-source-code-pro=2.030=hab24e00_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- ftputil=5.0.1=pyhd8ed1ab_0
- future=0.18.2=py39hf3d152e_3
- gdk-pixbuf=2.42.6=h04a7f16_0
- gettext=0.19.8.1=h0b5b191_1005
- ghostscript=9.53.3=h58526e2_2
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.7=pyhd8ed1ab_0
- gitpython=3.1.15=pyhd8ed1ab_0
- glib=2.68.1=h9c3ff4c_0
- glib-tools=2.68.1=h9c3ff4c_0
- google-api-core=1.26.2=pyhd8ed1ab_0
- google-api-python-client=2.2.0=pyhd8ed1ab_0
- google-auth=1.28.0=pyh44b312d_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=1.5.0=pyhd3deb0d_0
- google-cloud-storage=1.35.1=pyh44b312d_0
- google-crc32c=1.1.2=py39hb81f231_0
- google-resumable-media=1.2.0=pyhd3deb0d_0
- googleapis-common-protos=1.53.0=py39hf3d152e_0
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.42.3=h6939c30_2
- grpcio=1.37.0=py39hff7568b_0
- gsl=2.6=he838d99_2
- gtk2=2.24.33=hab0c2f8_0
- gts=0.7.6=h64030ff_2
- harfbuzz=2.4.0=h9f30f68_3
- hdf5=1.10.6=nompi_h6a2412b_1114
- hisat2=2.2.1=he1b5a44_2
- htseq=0.13.5=py39h70b41aa_1
- htslib=1.12=h9093b5e_1
- httplib2=0.19.1=pyhd8ed1ab_0
- humanfriendly=9.1=py39hf3d152e_0
- icu=64.2=he1b5a44_1
- idna=2.10=pyh9f0ad1d_0
- imagemagick=7.0.11_8=pl5320h0cb4662_0
- importlib-metadata=4.0.1=py39hf3d152e_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- isodate=0.6.0=py_1
- jbig=2.1=h7f98852_2002
- jellyfish=1.1.12=h6bb024c_1
- jemalloc=5.2.1=h9c3ff4c_5
- jinja2=2.11.3=pyh44b312d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- jsonschema=3.2.0=pyhd8ed1ab_3
- jupyter_core=4.7.1=py39hf3d152e_0
- kallisto=0.46.2=h60f4f9f_2
- kiwisolver=1.3.1=py39h1a9c180_1
- kraken=1.1=h470a237_2
- krb5=1.17.2=h926e7f8_0
- lastz=1.0.4=h470a237_2
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=5_h92ddd45_netlib
- libcblas=3.9.0=5_h92ddd45_netlib
- libconfig=1.5=0
- libcrc32c=1.1.1=h9c3ff4c_2
- libcurl=7.76.1=hc4aaa36_1
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libffi=3.3=h58526e2_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h2828fa1_19
- libgfortran-ng=9.3.0=hff62375_19
- libgfortran5=9.3.0=hff62375_19
- libglib=2.68.1=h3e27bee_0
- libgomp=9.3.0=h2828fa1_19
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=5_h92ddd45_netlib
- libnghttp2=1.43.0=h812cca2_0
- libopenblas=0.3.13=pthreads_h8fe5266_0
- libpng=1.6.37=h21135ba_2
- libprotobuf=3.15.8=h780b84a_0
- librsvg=2.50.3=hfa39831_1
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_19
- libtiff=4.2.0=hdc55705_1
- libtool=2.4.6=h58526e2_1007
- libuuid=2.32.1=h7f98852_1000
- libwebp=1.2.0=h3452ae3_0
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxml2=2.9.10=hee79883_0
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_0
- lzstring=1.0.4=py_1001
- markdown=3.3.4=pyhd8ed1ab_0
- markupsafe=1.1.1=py39h3811e60_3
- mashmap=2.0=h543ed2d_4
- matplotlib-base=3.4.1=py39h2fa2bec_0
- more-itertools=8.7.0=pyhd8ed1ab_1
- msrest=0.6.21=pyh44b312d_0
- multidict=5.1.0=py39h3811e60_1
- multiqc=1.10.1=py_0
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- networkx=2.5=py_0
- numpy=1.20.2=py39hdbf815f_0
- oauth2client=4.1.3=py_0
- oauthlib=3.0.1=py_0
- olefile=0.46=pyh9f0ad1d_1
- openblas=0.3.13=pthreads_h4748800_0
- openjdk=11.0.1=h516909a_1016
- openjpeg=2.4.0=hf7af979_0
- openssl=1.1.1q=h7f8727e_0
- packaging=20.9=pyh44b312d_0
- pandas=1.2.4=py39hde0f152_0
- pandoc=2.17.1.1=ha770c72_0
- pango=1.42.4=h7062337_4
- parallel=20210222=ha770c72_0
- paramiko=2.7.2=pyh9f0ad1d_0
- pbzip2=1.1.13=0
- pcre=8.44=he1b5a44_0
- peppy=0.31.1=pyhd8ed1ab_0
- perl=5.32.0=h36c2ea0_0
- picard=2.26.10=hdfd78af_0
- pillow=8.1.2=py39hf95b381_1
- pip=21.1=pyhd8ed1ab_0
- pixman=0.38.0=h516909a_1003
- pkg-config=0.29.2=h36c2ea0_1008
- plotly=5.5.0=pyhd8ed1ab_0
- pluggy=0.13.1=py39hf3d152e_4
- ply=3.11=py_1
- prettytable=2.1.0=pyhd8ed1ab_0
- protobuf=3.15.8=py39he80948d_0
- psutil=5.8.0=py39h3811e60_1
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.4=py39hf3d152e_0
- py=1.10.0=pyhd3deb0d_0
- py2bit=0.3.0=py39h38f01e4_5
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybigwig=0.3.18=py39h015b436_1
- pycparser=2.20=pyh9f0ad1d_2
- pygments=2.8.1=pyhd8ed1ab_0
- pygraphviz=1.7=py39h78163bd_0
- pyjwt=2.0.1=pyhd8ed1ab_1
- pynacl=1.4.0=py39h3811e60_2
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyrsistent=0.17.3=py39h3811e60_2
- pysam=0.16.0.1=py39h051187c_3
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py39hf3d152e_3
- pytest=6.2.3=py39hf3d152e_0
- python=3.9.2=hffdb5ce_0_cpython
- python-dateutil=2.8.1=py_0
- python-irodsclient=0.8.6=pyhd8ed1ab_0
- python_abi=3.9=1_cp39
- pytz=2021.1=pyhd8ed1ab_0
- pyyaml=5.4.1=py39h3811e60_0
- r-base=3.2.2=0
- ratelimiter=1.2.0=py_1002
- readline=8.1=h46c0cb4_0
- requests=2.25.1=pyhd3deb0d_0
- requests-oauthlib=1.3.0=pyh9f0ad1d_0
- rich=10.1.0=py39hf3d152e_0
- rsa=4.7.2=pyh44b312d_0
- s3transfer=0.4.2=pyhd8ed1ab_0
- salmon=1.4.0=hf69c8f4_0
- samtools=1.12=h9aed4be_1
- scipy=1.6.3=py39hee8e79c_0
- setuptools=49.6.0=py39hf3d152e_3
- simplejson=3.17.2=py39h3811e60_2
- singularity=2.4.2=0
- six=1.15.0=pyh9f0ad1d_0
- slacker=0.14.0=py_0
- smart_open=5.0.0=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.2.1=hdfd78af_0
- snakemake-minimal=6.2.1=pyhdfd78af_0
- snpeff=5.1=hdfd78af_0
- spectra=0.0.11=py_1
- sqlite=3.35.5=h74cdb3f_0
- star=2.7.10a=h9ee0642_0
- stone=3.2.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- subread=2.0.1=h5bf99c6_1
- tbb=2021.2.0=h4bd325d_0
- tenacity=8.0.1=pyhd8ed1ab_0
- tk=8.6.10=h21135ba_1
- toml=0.10.2=pyhd8ed1ab_0
- toposort=1.6=pyhd8ed1ab_0
- tornado=6.1=py39h3811e60_1
- traitlets=5.0.5=py_0
- trimmomatic=0.39=hdfd78af_2
- typing-extensions=3.7.4.3=0
- typing_extensions=3.7.4.3=py_0
- tzdata=2021a=he74cb21_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- uritemplate=3.0.1=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.36.2=pyhd3deb0d_0
- wrapt=1.12.1=py39h3811e60_3
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.0=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxpm=3.5.13=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.5.1=py39h07f9747_0
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
- pip:
- cython==0.29.32
- cyvcf2==0.30.18
- joblib==1.2.0
- scikit-learn==1.1.3
- seaborn==0.12.1
- threadpoolctl==3.1.0
- toolshed==0.4.6
prefix: /research/labs/neurology/fryer/m239830/tools/miniconda3/envs/LBD