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ROI algorithm outputs #588

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milesOIST opened this issue Nov 8, 2023 · 0 comments

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milesOIST commented Nov 8, 2023

The 3 ROI detection algorithms output the data and IsCellData (suite2p, caiman) or RoiData (LCCD).
Issue:

Having 2 types of outputs means it is difficult to use subsequent algorithms. e.g. ETA asks for IsCellData
IsCellData is essentially unnecessary. suite2p creates a binary file to output the good data and ignore the noise. However, for analysis we only want to use the good data.

Solution
All algorithms only output RoiData data.

milesOIST mentioned this issue

LCCD RoiData cannot be used #599

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milesAraya mentioned this issue

Refactor LCCD to same output ROI data type caiman, suite2p, arayabrain/barebone-studio#396

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itutu-tienday assigned milesAraya

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