From 7b3f114b4e826f3b6d6ca781cb851f18e57051a3 Mon Sep 17 00:00:00 2001
From: ReiHashimoto <42664619+ReiHashimoto@users.noreply.github.com>
Date: Wed, 27 Mar 2024 14:36:34 +0900
Subject: [PATCH] add cnmf quality params

---
 .../optinist/wrappers/caiman/params/caiman_cnmf.yaml | 12 ++++++++++++
 1 file changed, 12 insertions(+)

diff --git a/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml b/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml
index 3fbe3fa57..d38ee0999 100644
--- a/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml
+++ b/studio/app/optinist/wrappers/caiman/params/caiman_cnmf.yaml
@@ -110,3 +110,15 @@ advanced:
     do_merge: True
     merge_parallel: False
     max_merge_area: null
+
+  quality_evaluation_params:
+    SNR_lowest: 0.5
+    cnn_lowest: 0.1
+    gSig_range: null
+    min_SNR: 2.5
+    min_cnn_thr: 0.9
+    rval_lowest: -1
+    rval_thr: 0.8
+    use_cnn: True
+    use_ecc: False
+    max_ecc: 3