diff --git a/compile.sh b/compile.sh new file mode 100755 index 0000000..cbf6f40 --- /dev/null +++ b/compile.sh @@ -0,0 +1,22 @@ +#!/usr/bin/env bash + +declare -A job +job=( [0]=main [1]=main_trackchanges [2]=main_linenum [3]=main_linenum_trackchanges [4]=main_textonly [5]=main_textonly_trackchanges +) +n_job=${#job[@]} +let n_job-- + +rm -rf out +mkdir out +mkdir -p ./compiled + +for i in $(seq 0 ${n_job}) +do +echo $i ${job[$i]} +pdflatex -interaction=nonstopmode -output-directory=./out --jobname=${job[$i]} "\gdef\condition{${i}} \input main.tex" +biber --input-directory=./out --output-directory=./out ${job[$i]}.bcf +pdflatex -interaction=nonstopmode -output-directory=./out --jobname=${job[$i]} "\gdef\condition{${i}} \input main.tex" +mv ./out/${job[$i]}.pdf ./compiled/${job[$i]}.pdf +done + +rm out/* diff --git a/compiled/main.pdf b/compiled/main.pdf index 9724854..6130767 100644 Binary files a/compiled/main.pdf and b/compiled/main.pdf differ diff --git a/compiled/main_linenum.pdf b/compiled/main_linenum.pdf index a57adfd..7dff696 100644 Binary files a/compiled/main_linenum.pdf and b/compiled/main_linenum.pdf differ diff --git a/compiled/main_linenum_trackchanges.pdf b/compiled/main_linenum_trackchanges.pdf index 72e82c5..2fa8d86 100644 Binary files a/compiled/main_linenum_trackchanges.pdf and b/compiled/main_linenum_trackchanges.pdf differ diff --git a/compiled/main_textonly.pdf b/compiled/main_textonly.pdf index 038e7a5..ce46d9b 100644 Binary files a/compiled/main_textonly.pdf and b/compiled/main_textonly.pdf differ diff --git a/compiled/main_trackchanges.pdf b/compiled/main_trackchanges.pdf index 68b9780..c08514f 100644 Binary files a/compiled/main_trackchanges.pdf and b/compiled/main_trackchanges.pdf differ diff --git a/summaries/flux.tex b/summaries/flux.tex index 1c49f83..8924f35 100644 --- a/summaries/flux.tex +++ b/summaries/flux.tex @@ -15,6 +15,6 @@ \subsection{FLUX: A pipeline for MEG analysis and beyond}\label{sec:FLUX} These goals can be achieved in mid-term objectives, such as making the FLUX pipeline fully BIDS compatible and more automated. Another mid-term goal is to containerize the FLUX pipeline and the associated dependencies making it easier to use. Moreover, expanding the applications of this pipeline to other systems like MEG CTF, Optically Pumped Magnetometer (OPM) and EEG will be another crucial step in making FLUX a more generalized neurophysiological data analysis pipeline. -\added{During the 2022 Brainhack, the team focused on incorporating the BIDS standard into the analysis pipeline using MNE\_BIDS\supercite{Appelhoff2019mne}. Consequently, an updated version of FLUX was released after the Brainhack meeting.} +\added{During the 2022 Brainhack, the team focused on incorporating the BIDS standard into the analysis pipeline using MNE\_BIDS\supercite{appelhoff2019mne}. Consequently, an updated version of FLUX was released after the Brainhack meeting.} \end{document}