CI failure, maybe due to overlapping synonyms

[cthoyt]

In my recent PRs #3082 and #3083, there appear to be some QA check failures occurring. From how they look, it's because different terms are sharing exact synonyms:

entity,property,value
http://purl.obolibrary.org/obo/UBERON_0002633,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,nV
http://purl.obolibrary.org/obo/UBERON_2000438,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,phy
http://purl.obolibrary.org/obo/UBERON_2005093,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,NV
http://purl.obolibrary.org/obo/UBERON_8440028,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,PHY

This wasn't an issue in the last merge, so I'm guessing it has to do with updates to odk/robot. Can someone take a look at these and solve them?

[cmungall]

looks like the check went from case sensitive to case insensitive. This is probably a good thing but your PR should not have been caught in the crossfire. If someone is able to make the fix (here or another PR), I would demote the TAO derived abbrevs

…

On Sun, Oct 1, 2023 at 3:58 AM Charles Tapley Hoyt ***@***.***> wrote: In my recent PRs #3082 <#3082> and #3083 <#3083>, there appear to be some QA check failures occurring. From how they look, it's because different terms are sharing exact synonyms: entity,property,valuehttp://purl.obolibrary.org/obo/UBERON_0002633,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,nVhttp://purl.obolibrary.org/obo/UBERON_2000438,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,phyhttp://purl.obolibrary.org/obo/UBERON_2005093,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,NVhttp://purl.obolibrary.org/obo/UBERON_8440028,http://www.geneontology.org/formats/oboInOwl#hasExactSynonym,PHY This wasn't an issue in the last merge, so I'm guessing it has to do with updates to odk/robot. Can someone take a look at these and solve them? — Reply to this email directly, view it on GitHub <#3084>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AAAMMOJAC3JOXWZO6OZMNMDX5FEGFANCNFSM6AAAAAA5OHTJIY> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[anitacaron]

That's unexpected. The ODK version in the QC is v1.4.1.

[anitacaron]

Updating the ODK to v1.4.3 with new OWLAPI and ROBOT versions in the QC will fix the issue.

[cthoyt]

It appears that this was not fixed by the ODK update. #3082 is still failing