diff --git a/.github/workflows/qc.yml b/.github/workflows/qc.yml index 64342f751e..257dad319d 100644 --- a/.github/workflows/qc.yml +++ b/.github/workflows/qc.yml @@ -19,7 +19,7 @@ jobs: ontology_qc: # The type of runner that the job will run on runs-on: ubuntu-latest - container: obolibrary/odkfull:v1.4.1 + container: obolibrary/odkfull:v1.4.3 # Steps represent a sequence of tasks that will be executed as part of the job steps: @@ -30,7 +30,7 @@ jobs: env: DEFAULT_BRANCH: master ROBOT_JAVA_ARGS: -Xmx6G - run: cd src/ontology && mkdir -p tmp reports mirror && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' BRI=false MIR=false IMP=false test > TESTLOG.log + run: cd src/ontology && mkdir -p tmp reports mirror && make ROBOT_ENV='ROBOT_JAVA_ARGS=-Xmx6G' GH_ACTION=true BRI=false MIR=false IMP=false test > TESTLOG.log - name: Last rows of QC report if: ${{ failure() }} run: tail -20 src/ontology/TESTLOG.log \ No newline at end of file diff --git a/docs/odk-workflows/RepositoryFileStructure.md b/docs/odk-workflows/RepositoryFileStructure.md index 2e24f35cf1..b55918861f 100644 --- a/docs/odk-workflows/RepositoryFileStructure.md +++ b/docs/odk-workflows/RepositoryFileStructure.md @@ -27,6 +27,7 @@ These are the current imports in UBERON | bfo | http://purl.obolibrary.org/obo/bfo.owl | None | | ncbitaxon | http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl | None | | nbo | http://purl.obolibrary.org/obo/nbo.owl | None | +| orcidio | https://w3id.org/orcidio/orcidio.owl | None | ## Components Components, in contrast to imports, are considered full members of the ontology. This means that any axiom in a component is also included in the ontology base - which means it is considered _native_ to the ontology. While this sounds complicated, consider this: conceptually, no component should be part of more than one ontology. If that seems to be the case, we are most likely talking about an import. Components are often not needed for ontologies, but there are some use cases: diff --git a/src/ontology/Makefile b/src/ontology/Makefile index 2b8579b732..3951dcad80 100644 --- a/src/ontology/Makefile +++ b/src/ontology/Makefile @@ -1,7 +1,7 @@ # ---------------------------------------- # Makefile for uberon # Generated using ontology-development-kit -# ODK Version: v1.4.1 +# ODK Version: v1.4.3 # ---------------------------------------- # IMPORTANT: DO NOT EDIT THIS FILE. To override default make goals, use uberon.Makefile instead @@ -44,7 +44,7 @@ REPORT_PROFILE_OPTS = --profile $(ROBOT_PROFILE) OBO_FORMAT_OPTIONS = SPARQL_VALIDATION_CHECKS = equivalent-classes owldef-self-reference illegal-annotation-property taxon-range orcid-contributor obsolete-replaced_by xrefs-mesh-pattern label-synonym-polysemy id-format SPARQL_EXPORTS = basic-report -ODK_VERSION_MAKEFILE = v1.4.1 +ODK_VERSION_MAKEFILE = v1.4.3 TODAY ?= $(shell date +%Y-%m-%d) OBODATE ?= $(shell date +'%d:%m:%Y %H:%M') @@ -114,7 +114,7 @@ all_main: $(MAIN_FILES) # ---------------------------------------- -IMPORTS = pr cl go envo ro bspo chebi pato bfo ncbitaxon nbo +IMPORTS = pr cl go envo ro bspo chebi pato bfo ncbitaxon nbo orcidio IMPORT_ROOTS = $(IMPORTDIR)/merged_import IMPORT_OWL_FILES = $(foreach n,$(IMPORT_ROOTS), $(n).owl) @@ -496,6 +496,14 @@ mirror-nbo: | $(TMPDIR) if [ $(MIR) = true ] && [ $(IMP) = true ]; then curl -L $(OBOBASE)/nbo/nbo-base.owl --create-dirs -o $(MIRRORDIR)/nbo.owl --retry 4 --max-time 200 &&\ $(ROBOT) convert -i $(MIRRORDIR)/nbo.owl -o $@.tmp.owl && mv $@.tmp.owl $(TMPDIR)/$@.owl; fi + +## ONTOLOGY: orcidio +.PHONY: mirror-orcidio +.PRECIOUS: $(MIRRORDIR)/orcidio.owl +mirror-orcidio: | $(TMPDIR) + if [ $(MIR) = true ] && [ $(IMP) = true ]; then $(ROBOT) convert -I https://w3id.org/orcidio/orcidio.owl -o $@.tmp.owl &&\ + mv $@.tmp.owl $(TMPDIR)/$@.owl; fi + ALL_MIRRORS = $(patsubst %, $(MIRRORDIR)/%.owl, $(IMPORTS)) MERGE_MIRRORS = true diff --git a/src/ontology/catalog-v001.xml b/src/ontology/catalog-v001.xml index 3b7c80b5ed..423d154214 100644 --- a/src/ontology/catalog-v001.xml +++ b/src/ontology/catalog-v001.xml @@ -49,6 +49,7 @@ + diff --git a/src/ontology/components/hra_depiction_3d_images.owl b/src/ontology/components/hra_depiction_3d_images.owl index 3167b45abb..5a453fe5e1 100644 --- a/src/ontology/components/hra_depiction_3d_images.owl +++ b/src/ontology/components/hra_depiction_3d_images.owl @@ -37,1248 +37,1248 @@ --> - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.0/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Placenta.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_L.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Kidney_R.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_L.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Kidney_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Heart.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Heart.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Heart.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.0/VH_F_Lung.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Lung.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Lung.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-f-lung.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.4/3d-vh-m-lung.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Pancreas.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Pancreas.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - 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https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Small_Intestine.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Small_Intestine.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Uterus.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-l.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.3/3d-vh-f-mammary-gland-r.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_F_Intestine_Large.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/SBU_M_Intestine_Large.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Liver.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Liver.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_F_Brain.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/Allen_M_Brain.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Blood_Vasculature.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Blood_Vasculature.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_L.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_F_Knee_R.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_L.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Knee_R.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb + https://ccf-ontology.hubmapconsortium.org/objects/v1.2/VH_M_Prostate.glb - + diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index f33da43dbb..44bebed8e7 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2023-09-05") + +Annotation(owl:versionInfo "2023-09-18") Declaration(Class()) Declaration(Class()) @@ -9612,6 +9612,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -12175,6 +12177,7 @@ Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) @@ -12218,6 +12221,7 @@ Declaration(AnnotationProperty(owl:deprecated)) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) Declaration(AnnotationProperty()) +Declaration(AnnotationProperty()) ############################ # Annotation Properties ############################ @@ -12866,6 +12870,8 @@ ObjectPropertyRange( "site of"@en) AnnotationAssertion( "[copied from inverse property 'occurs in'] b occurs_in c =def b is a process and c is a material entity or immaterial entity& there exists a spatiotemporal region r and b occupies_spatiotemporal_region r.& forall(t) if b exists_at t then c exists_at t & there exist spatial regions s and s’ where & b spatially_projects_onto s at t& c is occupies_spatial_region s’ at t& s is a proper_continuant_part_of s’ at t"@en) +AnnotationAssertion( "BFO:0000067") +AnnotationAssertion( "contains_process") AnnotationAssertion(rdfs:comment "Paraphrase of definition: a relation between an independent continuant and a process, in which the process takes place entirely within the independent continuant") AnnotationAssertion(rdfs:isDefinedBy ) AnnotationAssertion(rdfs:label "contains process"@en) @@ -13256,6 +13262,8 @@ AnnotationAssertion( "a relation between a specifically dependent continuant (the characteristic) and any other entity (the bearer), in which the characteristic depends on the bearer for its existence."@en) AnnotationAssertion( "inheres_in"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0000052") +AnnotationAssertion( "characteristic_of") AnnotationAssertion(rdfs:comment "Note that this relation was previously called \"inheres in\", but was changed to be called \"characteristic of\" because BFO2 uses \"inheres in\" in a more restricted fashion. This relation differs from BFO2:inheres_in in two respects: (1) it does not impose a range constraint, and thus it allows qualities of processes, as well as of information entities, whereas BFO2 restricts inheres_in to only apply to independent continuants (2) it is declared functional, i.e. something can only be a characteristic of one thing.") AnnotationAssertion(rdfs:label "characteristic of"@en) SubObjectPropertyOf( ) @@ -13276,6 +13284,7 @@ AnnotationAssertion( "external") AnnotationAssertion( "bearer_of") AnnotationAssertion( "bearer_of") +AnnotationAssertion( "has_characteristic") AnnotationAssertion(rdfs:label "has characteristic"@en) AnnotationAssertion(rdfs:label "bearer of") InverseFunctionalObjectProperty() @@ -13325,6 +13334,8 @@ AnnotationAssertion( "A function inheres in its bearer at all times for which the function exists, however the function need not be realized at all the times that the function exists."@en) AnnotationAssertion( "function_of"@en) AnnotationAssertion( "is function of"@en) +AnnotationAssertion( "RO:0000079") +AnnotationAssertion( "function_of") AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label "function of"@en) SubObjectPropertyOf( ) @@ -13338,6 +13349,8 @@ AnnotationAssertion( "A quality inheres in its bearer at all times for which the quality exists."@en) AnnotationAssertion( "is quality of"@en) AnnotationAssertion( "quality_of"@en) +AnnotationAssertion( "RO:0000080") +AnnotationAssertion( "quality_of") AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label "quality of"@en) SubObjectPropertyOf( ) @@ -13350,6 +13363,8 @@ AnnotationAssertion( "A role inheres in its bearer at all times for which the role exists, however the role need not be realized at all the times that the role exists."@en) AnnotationAssertion( "is role of"@en) AnnotationAssertion( "role_of"@en) +AnnotationAssertion( "RO:0000081") +AnnotationAssertion( "role_of") AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label "role of"@en) SubObjectPropertyOf( ) @@ -13361,6 +13376,8 @@ AnnotationAssertion( "a relation between an independent continuant (the bearer) and a function, in which the function specifically depends on the bearer for its existence"@en) AnnotationAssertion( "A bearer can have many functions, and its functions can exist for different periods of time, but none of its functions can exist when the bearer does not exist. A function need not be realized at all the times that the function exists."@en) AnnotationAssertion( "has_function"@en) +AnnotationAssertion( "RO:0000085") +AnnotationAssertion( "has_function") AnnotationAssertion(rdfs:label "has function"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13372,6 +13389,8 @@ AnnotationAssertion( "a relation between an independent continuant (the bearer) and a quality, in which the quality specifically depends on the bearer for its existence"@en) AnnotationAssertion( "A bearer can have many qualities, and its qualities can exist for different periods of time, but none of its qualities can exist when the bearer does not exist."@en) AnnotationAssertion( "has_quality"@en) +AnnotationAssertion( "RO:0000086") +AnnotationAssertion( "has_quality") AnnotationAssertion(rdfs:label "has quality"@en) SubObjectPropertyOf( ) ObjectPropertyRange( ) @@ -13382,6 +13401,8 @@ AnnotationAssertion( "a relation between an independent continuant (the bearer) and a role, in which the role specifically depends on the bearer for its existence"@en) AnnotationAssertion( "A bearer can have many roles, and its roles can exist for different periods of time, but none of its roles can exist when the bearer does not exist. A role need not be realized at all the times that the role exists."@en) AnnotationAssertion( "has_role"@en) +AnnotationAssertion( "RO:0000087") +AnnotationAssertion( "has_role") AnnotationAssertion(rdfs:label "has role"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13390,6 +13411,8 @@ ObjectPropertyRange( (has disposition) AnnotationAssertion( "a relation between an independent continuant (the bearer) and a disposition, in which the disposition specifically depends on the bearer for its existence"@en) +AnnotationAssertion( "RO:0000091") +AnnotationAssertion( "has_disposition") AnnotationAssertion(rdfs:label "has disposition"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13399,7 +13422,9 @@ ObjectPropertyRange( (disposition of) AnnotationAssertion( "inverse of has disposition") +AnnotationAssertion( "RO:0000092") AnnotationAssertion( ) +AnnotationAssertion( "disposition_of") AnnotationAssertion(rdfs:comment "This relation is modeled after the BFO relation of the same name which was in BFO2, but is used in a more restricted sense - specifically, we model this relation as functional (inherited from characteristic-of). Note that this relation is now removed from BFO2020.") AnnotationAssertion(rdfs:label "disposition of"@en) SubObjectPropertyOf( ) @@ -13413,6 +13438,8 @@ AnnotationAssertion( "Most location relations will only hold at certain times, but this is difficult to specify in OWL. See http://purl.obolibrary.org/obo/ro/docs/temporal-semantics/"@en) AnnotationAssertion( "location_of"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0001015") +AnnotationAssertion( "location_of") AnnotationAssertion(rdfs:label "location of"@en) InverseObjectProperties( ) TransitiveObjectProperty() @@ -13420,6 +13447,8 @@ TransitiveObjectProperty() # Object Property: (obsolete contains) AnnotationAssertion( "contains"@en) +AnnotationAssertion( "RO:0001019") +AnnotationAssertion( "obsolete_contains") AnnotationAssertion(rdfs:label "obsolete contains") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(owl:deprecated "true"^^xsd:boolean) @@ -13435,7 +13464,9 @@ AnnotationAssertion( "located_in"@en) AnnotationAssertion( ) AnnotationAssertion( "http://www.obofoundry.org/ro/#OBO_REL:located_in") +AnnotationAssertion( "RO:0001025") AnnotationAssertion( ) +AnnotationAssertion( "located_in") AnnotationAssertion(rdfs:label "located in"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Located_in"^^xsd:anyURI) TransitiveObjectProperty() @@ -13456,6 +13487,8 @@ AnnotationAssertion( "is boundary of"@en) AnnotationAssertion( "surface of"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002000") +AnnotationAssertion( "2D_boundary_of") AnnotationAssertion(rdfs:label "2D boundary of"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13470,6 +13503,8 @@ AnnotationAssertion( "has boundary"@en) AnnotationAssertion( "has_2D_boundary"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002002") +AnnotationAssertion( "has_2D_boundary") AnnotationAssertion(rdfs:label "has 2D boundary"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13479,6 +13514,8 @@ ObjectPropertyRange( ) AnnotationAssertion( "http://www.ncbi.nlm.nih.gov/pubmed/22402613"^^xsd:anyURI) +AnnotationAssertion( "RO:0002005") +AnnotationAssertion( "innervated_by") AnnotationAssertion(rdfs:label "innervated_by"@en) InverseObjectProperties( ) ObjectPropertyDomain( ) @@ -13488,6 +13525,8 @@ ObjectPropertyRange( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002006") +AnnotationAssertion( "has_synaptic_terminal_of") AnnotationAssertion(rdfs:label "has synaptic terminal of"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13548,6 +13587,8 @@ SubObjectPropertyOf( "A relationship that holds between a GO molecular function and a component of that molecular function that positively regulates the activity of the whole. More formally, A 'has regulatory component activity' B iff :A and B are GO molecular functions (GO_0003674), A has_component B and A is positively regulated by B.") AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:31:17Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002015") +AnnotationAssertion( "has_positive_regulatory_component_activity") AnnotationAssertion(rdfs:comment "By convention GO molecular functions are classified by their effector function and internal regulatory functions are treated as components. So, for example calmodulin has a protein binding activity that has positive regulatory component activity calcium binding activity. Receptor tyrosine kinase activity is a tyrosine kinase activity that has positive regulatory component 'ligand binding'.") AnnotationAssertion(rdfs:label "has positive regulatory component activity") SubObjectPropertyOf( ) @@ -13557,6 +13598,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "2017-05-24T09:44:33Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002017") +AnnotationAssertion( "has_component_activity") AnnotationAssertion(rdfs:comment "A 'has component activity' B if A is A and B are molecular functions (GO_0003674) and A has_component B.") AnnotationAssertion(rdfs:label "has component activity") SubObjectPropertyOf( ) @@ -13566,6 +13609,8 @@ SubObjectPropertyOf( "w 'has process component' p if p and w are processes, w 'has part' p and w is such that it can be directly disassembled into into n parts p, p2, p3, ..., pn, where these parts are of similar type.") AnnotationAssertion( ) AnnotationAssertion( "2017-05-24T09:49:21Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002018") +AnnotationAssertion( "has_component_process") AnnotationAssertion(rdfs:label "has component process") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13576,6 +13621,8 @@ ObjectPropertyRange( "A relationship between a process and a barrier, where the process occurs in a region spanning the barrier. For cellular processes the barrier is typically a membrane. Examples include transport across a membrane and membrane depolarization.") AnnotationAssertion( ) AnnotationAssertion( "2017-07-20T17:19:37Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002021") +AnnotationAssertion( "occurs_across") AnnotationAssertion(rdfs:label "occurs across") SubObjectPropertyOf( ) @@ -13583,6 +13630,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "2017-09-17T13:52:24Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002022") +AnnotationAssertion( "directly_regulated_by") AnnotationAssertion(Annotation( ) rdfs:comment "Process(P2) is directly regulated by process(P1) iff: P1 regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding regulates the kinase activity (P2) of protein B then P1 directly regulates P2.") AnnotationAssertion(rdfs:label "directly regulated by") SubObjectPropertyOf( ) @@ -13593,6 +13642,8 @@ InverseObjectProperties( ) "Process(P2) is directly negatively regulated by process(P1) iff: P1 negatively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding negatively regulates the kinase activity (P2) of protein B then P2 directly negatively regulated by P1.") AnnotationAssertion( ) AnnotationAssertion( "2017-09-17T13:52:38Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002023") +AnnotationAssertion( "directly_negatively_regulated_by") AnnotationAssertion(rdfs:label "directly negatively regulated by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13602,6 +13653,8 @@ InverseObjectProperties( ) "Process(P2) is directly postively regulated by process(P1) iff: P1 positively regulates P2 via direct physical interaction between an agent executing P1 (or some part of P1) and an agent executing P2 (or some part of P2). For example, if protein A has protein binding activity(P1) that targets protein B and this binding positively regulates the kinase activity (P2) of protein B then P2 is directly postively regulated by P1.") AnnotationAssertion( ) AnnotationAssertion( "2017-09-17T13:52:47Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002024") +AnnotationAssertion( "directly_positively_regulated_by") AnnotationAssertion(rdfs:label "directly positively regulated by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13611,6 +13664,8 @@ InverseObjectProperties( ) "A 'has effector activity' B if A and B are GO molecular functions (GO_0003674), A 'has component activity' B and B is the effector (output function) of B. Each compound function has only one effector activity.") AnnotationAssertion( ) AnnotationAssertion( "2017-09-22T14:14:36Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0002025") +AnnotationAssertion( "has_effector_activity") AnnotationAssertion(rdfs:comment "This relation is designed for constructing compound molecular functions, typically in combination with one or more regulatory component activity relations.") AnnotationAssertion(rdfs:label "has effector activity") SubObjectPropertyOf( ) @@ -13620,7 +13675,9 @@ FunctionalObjectProperty() AnnotationAssertion( "David Osumi-Sutherland") AnnotationAssertion( "<="@en) +AnnotationAssertion( "RO:0002081") AnnotationAssertion( ) +AnnotationAssertion( "before_or_simultaneous_with") AnnotationAssertion(rdfs:comment "Primitive instance level timing relation between events") AnnotationAssertion(rdfs:label "before or simultaneous with"@en) SubObjectPropertyOf( ) @@ -13630,7 +13687,9 @@ SubObjectPropertyOf( "x simultaneous with y iff ω(x) = ω(y) and ω(α ) = ω(α), where α is a function that maps a process to a start point, and ω is a function that maps a process to an end point and '=' indicates the same instance in time.") AnnotationAssertion( ) AnnotationAssertion( "David Osumi-Sutherland") +AnnotationAssertion( "RO:0002082") AnnotationAssertion( ) +AnnotationAssertion( "simultaneous_with") AnnotationAssertion(rdfs:comment "t1 simultaneous_with t2 iff:= t1 before_or_simultaneous_with t2 and not (t1 before t2)"@en) AnnotationAssertion(rdfs:label "simultaneous with"@en) SubObjectPropertyOf( ) @@ -13640,7 +13699,9 @@ TransitiveObjectProperty() # Object Property: (ends after) AnnotationAssertion( "David Osumi-Sutherland") +AnnotationAssertion( "RO:0002086") AnnotationAssertion( ) +AnnotationAssertion( "ends_after") AnnotationAssertion(rdfs:comment "X ends_after Y iff: end(Y) before_or_simultaneous_with end(X)"@en) AnnotationAssertion(rdfs:label "ends after"@en) SubObjectPropertyOf( ) @@ -13685,6 +13746,8 @@ AnnotationAssertion( " some ( and some ?Y)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002100") +AnnotationAssertion( "has_soma_location") AnnotationAssertion(rdfs:label "has soma location"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13699,6 +13762,8 @@ AnnotationAssertion( " some ( that part_of some ( that has_part some ( that some Y?)))") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002103") +AnnotationAssertion( "synapsed_by") AnnotationAssertion(rdfs:label "synapsed by"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13715,6 +13780,8 @@ AnnotationAssertion( ) AnnotationAssertion( " some ( and some ?Y)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002104") +AnnotationAssertion( "has_plasma_membrane_part") AnnotationAssertion(rdfs:label "has plasma membrane part"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13730,6 +13797,8 @@ AnnotationAssertion( " some ( that part_of some ( that some ( that some Y?)))") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002120") +AnnotationAssertion( "synapsed_to") AnnotationAssertion(rdfs:comment "N1 synapsed_to some N2 Expands to: N1 SubclassOf ( @@ -13750,6 +13819,8 @@ AnnotationAssertion( " some ( that some Y?)") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002130") +AnnotationAssertion( "has_synaptic_terminal_in") AnnotationAssertion(rdfs:label "has synaptic terminal in"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -13785,6 +13856,8 @@ AnnotationAssertion( " some ( that ( some ( that some Y?)))") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002134") +AnnotationAssertion( "innervates") AnnotationAssertion(rdfs:label "innervates"@en) ObjectPropertyDomain( ) @@ -13796,6 +13869,8 @@ AnnotationAssertion( "connected to") AnnotationAssertion( "The label for this relation was previously connected to. I relabeled this to \"continuous with\". The standard notion of connectedness does not imply shared boundaries - e.g. Glasgow connected_to Edinburgh via M8; my patella connected_to my femur (via patellar-femoral joint)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002150") +AnnotationAssertion( "continuous_with") AnnotationAssertion(rdfs:label "continuous with"@en) AnnotationAssertion(rdfs:seeAlso "FMA:85972") SubObjectPropertyOf( ) @@ -13809,6 +13884,8 @@ AnnotationAssertion( "d derived_by_descent_from a if d is specified by some genetic program that is sequence-inherited-from a genetic program that specifies a.") AnnotationAssertion( "ancestral_stucture_of") AnnotationAssertion( "evolutionarily_descended_from") +AnnotationAssertion( "RO:0002156") +AnnotationAssertion( "derived_by_descent_from") AnnotationAssertion(rdfs:label "derived by descent from") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -13818,7 +13895,9 @@ TransitiveObjectProperty() AnnotationAssertion( ) AnnotationAssertion( "inverse of derived by descent from") +AnnotationAssertion( "RO:0002157") AnnotationAssertion( ) +AnnotationAssertion( "has_derived_by_descendant") AnnotationAssertion(rdfs:label "has derived by descendant") SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -13828,6 +13907,8 @@ TransitiveObjectProperty() AnnotationAssertion( ) AnnotationAssertion( "two individual entities d1 and d2 stand in a shares_ancestor_with relation if and only if there exists some a such that d1 derived_by_descent_from a and d2 derived_by_descent_from a.") AnnotationAssertion( "Consider obsoleting and merging with child relation, 'in homology relationship with'") +AnnotationAssertion( "RO:0002158") +AnnotationAssertion( "shares_ancestor_with") AnnotationAssertion(rdfs:comment "VBO calls this homologous_to") AnnotationAssertion(rdfs:label "shares ancestor with") SubObjectPropertyOf( ) @@ -13837,6 +13918,8 @@ TransitiveObjectProperty() # Object Property: (serially homologous to) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002159") +AnnotationAssertion( "serially_homologous_to") AnnotationAssertion(rdfs:label "serially homologous to") SubObjectPropertyOf( ) SymmetricObjectProperty() @@ -13853,6 +13936,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002160") +AnnotationAssertion( "only_in_taxon") AnnotationAssertion(rdfs:label "only in taxon") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -13865,7 +13950,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002162") AnnotationAssertion( ) +AnnotationAssertion( "in_taxon") AnnotationAssertion(rdfs:comment "Connects a biological entity to its taxon of origin.") AnnotationAssertion(rdfs:label "in taxon") AnnotationAssertion(rdfs:seeAlso ) @@ -13881,7 +13968,9 @@ AnnotationAssertion( "Note that it would be possible to use the relation to label the relationship between a near infinite number of structures - between the rings of saturn and my left earlobe. The intent is that this is used for parsiomoniously for disambiguation purposes - for example, between siblings in a jointly exhaustive pairwise disjointness hierarchy") AnnotationAssertion( "BFO_0000051 exactly 0 (BFO_0000050 some ?Y)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002163") AnnotationAssertion( ) +AnnotationAssertion( "spatially_disjoint_from") AnnotationAssertion(rdfs:label "spatially disjoint from") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Part-disjointness-Design-Pattern"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -13891,6 +13980,8 @@ SubObjectPropertyOf( "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).") AnnotationAssertion( "a is connected to b if and only if a and b are discrete structure, and there exists some connecting structure c, such that c connects a and b") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002170") +AnnotationAssertion( "connected_to") AnnotationAssertion(rdfs:label "connected to"@en) AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"^^xsd:anyURI) AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Modeling-articulations-Design-Pattern"^^xsd:anyURI) @@ -13904,6 +13995,8 @@ AnnotationAssertion( "a 'toe distal phalanx bone' that is connected to a 'toe medial phalanx bone' (an interphalangeal joint *connects* these two bones).") AnnotationAssertion( "c connects a if and only if there exist some b such that a and b are similar parts of the same system, and c connects b, specifically, c connects a with b. When one structure connects two others it unites some aspect of the function or role they play within the system.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002176") +AnnotationAssertion( "connects") AnnotationAssertion(rdfs:label "connects"@en) AnnotationAssertion(rdfs:label "connects") AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/wiki/Connectivity-Design-Pattern"^^xsd:anyURI) @@ -13916,6 +14009,8 @@ ObjectPropertyRange( ObjectSomeValues AnnotationAssertion( "a is attached to part of b if a is attached to b, or a is attached to some p, where p is part of b.") AnnotationAssertion( "attached to part of (anatomical structure to anatomical structure)") +AnnotationAssertion( "RO:0002177") +AnnotationAssertion( "attached_to_part_of") AnnotationAssertion(rdfs:label "attached to part of"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -13927,6 +14022,8 @@ ObjectPropertyRange( "Relation between an arterial structure and another structure, where the arterial structure acts as a conduit channeling fluid, substance or energy.") AnnotationAssertion( "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between an artery and an anatomical structure") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002178") +AnnotationAssertion( "supplies") AnnotationAssertion(rdfs:label "supplies"@en) SubObjectPropertyOf( ) @@ -13935,6 +14032,8 @@ SubObjectPropertyOf( "Relation between an collecting structure and another structure, where the collecting structure acts as a conduit channeling fluid, substance or energy away from the other structure.") AnnotationAssertion( "Individual ontologies should provide their own constraints on this abstract relation. For example, in the realm of anatomy this should hold between a vein and an anatomical structure") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002179") +AnnotationAssertion( "drains") AnnotationAssertion(rdfs:label "drains"@en) SubObjectPropertyOf( ) @@ -13963,6 +14062,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002202") +AnnotationAssertion( "develops_from") AnnotationAssertion(rdfs:comment "This is the transitive form of the develops from relation") AnnotationAssertion(rdfs:label "develops from"@en) SubObjectPropertyOf( ) @@ -13978,7 +14079,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002203") AnnotationAssertion( ) +AnnotationAssertion( "develops_into") AnnotationAssertion(rdfs:label "develops into"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -13991,6 +14094,8 @@ AnnotationAssertion( ) AnnotationAssertion( "x expressed in y if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and the transcription of x is part of the gene expression process (iii) x is a mature gene product such as a protein, and x was translated or otherwise processes from a transcript that was transcribed as part of this gene expression process") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002206") +AnnotationAssertion( "expressed_in") AnnotationAssertion(rdfs:label "expressed in"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -14006,7 +14111,9 @@ AnnotationAssertion( ) AnnotationAssertion( "FBbt") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002207") AnnotationAssertion( "has developmental precursor") +AnnotationAssertion( "directly_develops_from") AnnotationAssertion(rdfs:comment "TODO - add child relations from DOS") AnnotationAssertion(rdfs:label "directly develops from"@en) SubObjectPropertyOf( ) @@ -14019,7 +14126,9 @@ ObjectPropertyRange( ObjectUnionOf( ) AnnotationAssertion( "inverse of directly develops from") AnnotationAssertion( "developmental precursor of") +AnnotationAssertion( "RO:0002210") AnnotationAssertion( ) +AnnotationAssertion( "directly_develops_into") AnnotationAssertion(rdfs:label "directly develops into"@en) SubObjectPropertyOf( ) @@ -14133,6 +14242,8 @@ AnnotationAssertion( "x surrounded_by y if and only if (1) x is adjacent to y and for every region r that is adjacent to x, r overlaps y (2) the shared boundary between x and y occupies the majority of the outermost boundary of x") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002219") +AnnotationAssertion( "surrounded_by") AnnotationAssertion(rdfs:label "surrounded by"@en) AnnotationAssertion(rdfs:label "surrounded by") SubObjectPropertyOf( ) @@ -14170,7 +14281,9 @@ AnnotationAssertion( "inverse of surrounded by") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002221") AnnotationAssertion( ) +AnnotationAssertion( "surrounds") AnnotationAssertion(rdfs:label "surrounds"@en) SubObjectPropertyOf( ) @@ -14181,7 +14294,9 @@ AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for relations between occurrents involving the relative timing of their starts and ends.") AnnotationAssertion( "https://docs.google.com/document/d/1kBv1ep_9g3sTR-SD3jqzFqhuwo9TPNF-l-9fUDbO6rM/edit?pli=1"^^xsd:anyURI) +AnnotationAssertion( "RO:0002222") AnnotationAssertion( ) +AnnotationAssertion( "temporally_related_to") AnnotationAssertion(rdfs:comment "A relation that holds between two occurrents. This is a grouping relation that collects together all the Allen relations.") AnnotationAssertion(rdfs:label "temporally related to"@en) ObjectPropertyDomain( ) @@ -14194,7 +14309,9 @@ AnnotationAssertion( ) AnnotationAssertion( "Chris Mungall") AnnotationAssertion( "Allen") +AnnotationAssertion( "RO:0002223") AnnotationAssertion( ) +AnnotationAssertion( "starts") AnnotationAssertion(rdfs:label "starts"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14224,6 +14341,8 @@ TransitiveObjectProperty() AnnotationAssertion( ) AnnotationAssertion( "x develops from part of y if and only if there exists some z such that x develops from z and z is part of y") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002225") +AnnotationAssertion( "develops_from_part_of") AnnotationAssertion(rdfs:label "develops from part of"@en) SubObjectPropertyOf( ) @@ -14234,6 +14353,8 @@ AnnotationAssertion( ) AnnotationAssertion( "EHDAA2") AnnotationAssertion( "Jonathan Bard, EHDAA2") +AnnotationAssertion( "RO:0002226") +AnnotationAssertion( "develops_in") AnnotationAssertion(rdfs:label "develops in"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -14244,7 +14365,9 @@ AnnotationAssertion( "inverse of ends with") AnnotationAssertion( ) AnnotationAssertion( "Chris Mungall") +AnnotationAssertion( "RO:0002229") AnnotationAssertion( ) +AnnotationAssertion( "ends") AnnotationAssertion(rdfs:label "ends"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14348,6 +14471,8 @@ InverseObjectProperties( "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is connecting branch of S, and B1-1 as a connecting branch of B1.") AnnotationAssertion( "b connecting-branch-of s iff b is connected to s, and there exists some tree-like structure t such that the mereological sum of b plus s is either the same as t or a branching-part-of t.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002252") +AnnotationAssertion( "connecting_branch_of") AnnotationAssertion(rdfs:label "connecting branch of") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -14358,7 +14483,9 @@ InverseObjectProperties( "inverse of connecting branch of") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002253") AnnotationAssertion( ) +AnnotationAssertion( "has_connecting_branch") AnnotationAssertion(rdfs:label "has connecting branch") SubObjectPropertyOf( ) @@ -14368,6 +14495,8 @@ AnnotationAssertion( ) AnnotationAssertion( "x has developmental contribution from y iff x has some part z such that z develops from y"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002254") +AnnotationAssertion( "has_developmental_contribution_from") AnnotationAssertion(rdfs:label "has developmental contribution from"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -14379,7 +14508,9 @@ ObjectPropertyRange( ) AnnotationAssertion( "inverse of has developmental contribution from") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002255") AnnotationAssertion( ) +AnnotationAssertion( "developmentally_contributes_to") AnnotationAssertion(rdfs:label "developmentally contributes to"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14396,6 +14527,8 @@ AnnotationAssertion( " Developmental Biology, Gilbert, 8th edition, figure 6.5(F)") AnnotationAssertion( "GO:0001759") AnnotationAssertion( "We place this under 'developmentally preceded by'. This placement should be examined in the context of reciprocal inductions[cjm]") +AnnotationAssertion( "RO:0002256") +AnnotationAssertion( "developmentally_induced_by") AnnotationAssertion(rdfs:label "developmentally induced by"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -14407,6 +14540,8 @@ ObjectPropertyRange( ) AnnotationAssertion( "Inverse of developmentally induced by"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002257") +AnnotationAssertion( "developmentally_induces") AnnotationAssertion(rdfs:label "developmentally induces"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14418,6 +14553,8 @@ AnnotationAssertion( "false"^^xsd:boolean) AnnotationAssertion( ) AnnotationAssertion( "In general you should not use this relation to make assertions - use one of the more specific relations below this one") +AnnotationAssertion( "RO:0002258") +AnnotationAssertion( "developmentally_preceded_by") AnnotationAssertion(rdfs:comment "This relation groups together various other developmental relations. It is fairly generic, encompassing induction, developmental contribution and direct and transitive develops from") AnnotationAssertion(rdfs:label "developmentally preceded by"@en) SubObjectPropertyOf( ) @@ -14429,7 +14566,9 @@ ObjectPropertyRange( "A faulty traffic light (material entity) whose malfunctioning (a process) is causally upstream of a traffic collision (a process): the traffic light acts upstream of the collision.") AnnotationAssertion( "c acts upstream of p if and only if c enables some f that is involved in p' and p' occurs chronologically before p, is not part of p, and affects the execution of p. c is a material entity and f, p, p' are processes.") +AnnotationAssertion( "RO:0002263") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of") AnnotationAssertion(rdfs:label "acts upstream of") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -14438,8 +14577,10 @@ SubObjectPropertyOf( "A gene product that has some activity, where that activity may be a part of a pathway or upstream of the pathway.") AnnotationAssertion( "c acts upstream of or within p if c is enables f, and f is causally upstream of or within p. c is a material entity and p is an process.") +AnnotationAssertion( "RO:0002264") AnnotationAssertion( "affects") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of_or_within") AnnotationAssertion(rdfs:label "acts upstream of or within") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -14451,6 +14592,8 @@ AnnotationAssertion( "This relation is intended for cases such as when we have a bone element replacing its cartilage element precursor. Currently most AOs represent this using 'develops from'. We need to decide whether 'develops from' will be generic and encompass replacement, or whether we need a new name for a generic relation that encompasses replacement and development-via-cell-lineage") AnnotationAssertion( ) AnnotationAssertion( "replaces") +AnnotationAssertion( "RO:0002285") +AnnotationAssertion( "developmentally_replaces") AnnotationAssertion(rdfs:label "developmentally replaces"@en) SubObjectPropertyOf( ) @@ -14459,6 +14602,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "Inverse of developmentally preceded by") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002286") +AnnotationAssertion( "developmentally_succeeded_by") AnnotationAssertion(rdfs:label "developmentally succeeded by"@en) SubObjectPropertyOf( ) @@ -14467,6 +14612,8 @@ SubObjectPropertyOf( "'hypopharyngeal eminence' SubClassOf 'part of precursor of' some tongue") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002287") +AnnotationAssertion( "part_of_developmental_precursor_of") AnnotationAssertion(rdfs:label "part of developmental precursor of"@en) SubObjectPropertyOf( ) @@ -14475,6 +14622,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "y expresses x if and only if there is a gene expression process (GO:0010467) that occurs in y, and one of the following holds: (i) x is a gene, and x is transcribed into a transcript as part of the gene expression process (ii) x is a transcript, and x was transcribed from a gene as part of the gene expression process (iii) x is a mature gene product (protein or RNA), and x was translated or otherwise processed from a transcript that was transcribed as part of the gene expression process.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002292") +AnnotationAssertion( "expresses") AnnotationAssertion(rdfs:label "expresses"@en) SubObjectPropertyOf( ) @@ -14615,6 +14764,8 @@ AnnotationAssertion( "inheres in part of") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002314") +AnnotationAssertion( "characteristic_of_part_of") AnnotationAssertion(rdfs:label "characteristic of part of"@en) AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -14643,6 +14794,8 @@ ObjectPropertyRange( "A relationship that holds via some environmental process") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the process of evolution.") +AnnotationAssertion( "RO:0002320") +AnnotationAssertion( "evolutionarily_related_to") AnnotationAssertion(rdfs:label "evolutionarily related to"@en) # Object Property: (ecologically related to) @@ -14651,7 +14804,9 @@ AnnotationAssertion( "Awaiting class for domain/range constraint, see: https://github.com/OBOFoundry/Experimental-OBO-Core/issues/6") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving ecological interactions") +AnnotationAssertion( "RO:0002321") AnnotationAssertion( ) +AnnotationAssertion( "ecologically_related_to") AnnotationAssertion(rdfs:label "ecologically related to"@en) # Object Property: (confers advantage in) @@ -14659,7 +14814,9 @@ AnnotationAssertion(rdfs:label "ecol AnnotationAssertion( "An experimental relation currently used to connect a feature possessed by an organism (e.g. anatomical structure, biological process, phenotype or quality) to a habitat or environment in which that feature is well suited, adapted or provides a reproductive advantage for the organism. For example, fins to an aquatic environment. Usually this will mean that the structure is adapted for this environment, but we avoid saying this directly - primitive forms of the structure may not have evolved specifically for that environment (for example, early wings were not necessarily adapted for an aerial environment). Note also that this is a statement about the general class of structures - not every instance of a limb need confer an advantage for a terrestrial environment, e.g. if the limb is vestigial.") AnnotationAssertion( ) AnnotationAssertion( "adapted for") +AnnotationAssertion( "RO:0002322") AnnotationAssertion( ) +AnnotationAssertion( "confers_advantage_in") AnnotationAssertion(rdfs:label "confers advantage in"@en) SubObjectPropertyOf( ) @@ -14669,6 +14826,8 @@ AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving parthood or connectivity relationships") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002323") +AnnotationAssertion( "mereotopologically_related_to") AnnotationAssertion(rdfs:label "mereotopologically related to"@en) # Object Property: (developmentally related to) @@ -14676,6 +14835,8 @@ AnnotationAssertion(rdfs:label "mere AnnotationAssertion( "A relationship that holds between entities participating in some developmental process (GO:0032502)") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving organismal development") +AnnotationAssertion( "RO:0002324") +AnnotationAssertion( "developmentally_related_to") AnnotationAssertion(rdfs:label "developmentally related to"@en) # Object Property: (enables) @@ -14689,7 +14850,9 @@ AnnotationAssertion( "is catalyzing") AnnotationAssertion( "is executing") AnnotationAssertion( "This relation differs from the parent relation 'capable of' in that the parent is weaker and only expresses a capability that may not be actually realized, whereas this relation is always realized.") +AnnotationAssertion( "RO:0002327") AnnotationAssertion( ) +AnnotationAssertion( "enables") AnnotationAssertion(rdfs:label "enables"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Enables"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -14700,6 +14863,8 @@ InverseObjectProperties( "A grouping relationship for any relationship directly involving a function, or that holds because of a function of one of the related entities.") AnnotationAssertion( ) AnnotationAssertion( "This is a grouping relation that collects relations used for the purpose of connecting structure and function") +AnnotationAssertion( "RO:0002328") +AnnotationAssertion( "functionally_related_to") AnnotationAssertion(rdfs:label "functionally related to"@en) # Object Property: (part of structure that is capable of) @@ -14707,6 +14872,8 @@ AnnotationAssertion(rdfs:label "func AnnotationAssertion( "this relation holds between c and p when c is part of some c', and c' is capable of p.") AnnotationAssertion( ) AnnotationAssertion( "false"^^xsd:boolean) +AnnotationAssertion( "RO:0002329") +AnnotationAssertion( "part_of_structure_that_is_capable_of") AnnotationAssertion(rdfs:label "part of structure that is capable of"@en) SubObjectPropertyOf( ) @@ -14715,6 +14882,8 @@ SubObjectPropertyOf( "holds between two entities when some genome-level process such as gene expression is involved. This includes transcriptional, spliceosomal events. These relations can be used between either macromolecule entities (such as regions of nucleic acid) or between their abstract informational counterparts.") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving the genome of an organism") +AnnotationAssertion( "RO:0002330") +AnnotationAssertion( "genomically_related_to") AnnotationAssertion(rdfs:label "genomically related to"@en) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -14725,6 +14894,8 @@ AnnotationAssertion( ) AnnotationAssertion( "actively involved in") AnnotationAssertion( "enables part of") +AnnotationAssertion( "RO:0002331") +AnnotationAssertion( "involved_in") AnnotationAssertion(rdfs:label "involved in"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Involved_in"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -14751,7 +14922,9 @@ ObjectPropertyRange( "inverse of enables") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002333") AnnotationAssertion( ) +AnnotationAssertion( "enabled_by") AnnotationAssertion(rdfs:label "enabled by"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Enabled_by"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -14805,6 +14978,8 @@ SubObjectPropertyOf( "A relationship that holds via some process of localization") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is a grouping relation.") +AnnotationAssertion( "RO:0002337") +AnnotationAssertion( "related_via_localization_to") AnnotationAssertion(rdfs:label "related via localization to"@en) ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -14898,6 +15073,8 @@ AnnotationAssertion( "member part of") AnnotationAssertion( "SIO") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002350") +AnnotationAssertion( "member_of") AnnotationAssertion(rdfs:label "member of"@en) SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -14907,6 +15084,8 @@ InverseObjectProperties( "has member is a mereological relation between a collection and an item.") AnnotationAssertion( "SIO") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002351") +AnnotationAssertion( "has_member") AnnotationAssertion(rdfs:label "has member"@en) SubObjectPropertyOf( ) IrreflexiveObjectProperty() @@ -14915,8 +15094,10 @@ IrreflexiveObjectProperty() AnnotationAssertion( "inverse of has input") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002352") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "input_of") AnnotationAssertion(rdfs:label "input of"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14939,6 +15120,8 @@ SubObjectPropertyOf( (formed as result of) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002354") +AnnotationAssertion( "formed_as_result_of") AnnotationAssertion(rdfs:label "formed as result of"@en) SubObjectPropertyOf( ) @@ -14947,7 +15130,9 @@ SubObjectPropertyOf( "a is attached to b if and only if a and b are discrete objects or object parts, and there are physical connections between a and b such that a force pulling a will move b, or a force pulling b will move a") AnnotationAssertion( ) AnnotationAssertion( "attached to (anatomical structure to anatomical structure)") +AnnotationAssertion( "RO:0002371") AnnotationAssertion( ) +AnnotationAssertion( "attached_to") AnnotationAssertion(rdfs:label "attached to"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -14958,6 +15143,8 @@ SymmetricObjectProperty() AnnotationAssertion( "m has_muscle_origin s iff m is attached_to s, and it is the case that when m contracts, s does not move. The site of the origin tends to be more proximal and have greater mass than what the other end attaches to."@en) AnnotationAssertion( ) AnnotationAssertion( "Wikipedia:Insertion_(anatomy)"@en) +AnnotationAssertion( "RO:0002372") +AnnotationAssertion( "has_muscle_origin") AnnotationAssertion(rdfs:label "has muscle origin"@en) AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -14969,6 +15156,8 @@ ObjectPropertyDomain(Annotation(rdfs:comment "We need to import uberon muscle to AnnotationAssertion( "m has_muscle_insertion s iff m is attaches_to s, and it is the case that when m contracts, s moves. Insertions are usually connections of muscle via tendon to bone."@en) AnnotationAssertion( ) AnnotationAssertion( "Wikipedia:Insertion_(anatomy)"@en) +AnnotationAssertion( "RO:0002373") +AnnotationAssertion( "has_muscle_insertion") AnnotationAssertion(rdfs:label "has muscle insertion"@en) AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -14983,6 +15172,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "has fused element") +AnnotationAssertion( "RO:0002374") +AnnotationAssertion( "derived_from_ancestral_fusion_of") AnnotationAssertion(rdfs:comment "A has_fused_element B does not imply that A has_part some B: rather than A has_part some B', where B' that has some evolutionary relationship to B."@en) AnnotationAssertion(rdfs:label "derived from ancestral fusion of"@en) SubObjectPropertyOf( ) @@ -14995,6 +15186,8 @@ AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving branching relationships") AnnotationAssertion( "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (plant branches and roots, leaf veins, animal veins, arteries, nerves)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002375") +AnnotationAssertion( "in_branching_relationship_with") AnnotationAssertion(rdfs:label "in branching relationship with"@en) AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "https://github.com/obophenotype/uberon/issues/170"^^xsd:anyURI) @@ -15015,7 +15208,9 @@ AnnotationAssertion( "http://en.wikipedia.org/wiki/Tributary") AnnotationAssertion( "http://www.medindia.net/glossary/venous_tributary.htm") AnnotationAssertion( "This relation can be used for geographic features (e.g. rivers) as well as anatomical structures (veins, arteries)"^^xsd:anyURI) +AnnotationAssertion( "RO:0002376") AnnotationAssertion( ) +AnnotationAssertion( "tributary_of") AnnotationAssertion(rdfs:label "tributary of"@en) AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "http://en.wikipedia.org/wiki/Tributary"^^xsd:anyURI) @@ -15028,6 +15223,8 @@ AnnotationAssertion( "x spatially_coextensive_with y if and inly if x and y have the same location") AnnotationAssertion( ) AnnotationAssertion( "This relation is added for formal completeness. It is unlikely to be used in many practical scenarios") +AnnotationAssertion( "RO:0002379") +AnnotationAssertion( "spatially_coextensive_with") AnnotationAssertion(rdfs:label "spatially coextensive with"@en) SubObjectPropertyOf( ) @@ -15036,7 +15233,9 @@ SubObjectPropertyOf( "In the tree T depicted in https://oborel.github.io/obo-relations/branching_part_of.png, B1 is a (direct) branching part of T. B1-1, B1-2, and B1-3 are also branching parts of T, but these are considered indirect branching parts as they do not directly connect to the main stem S") AnnotationAssertion( "x is a branching part of y if and only if x is part of y and x is connected directly or indirectly to the main stem of y") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002380") AnnotationAssertion( ) +AnnotationAssertion( "branching_part_of") AnnotationAssertion(rdfs:label "branching part of"@en) AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "FMA:85994") @@ -15050,6 +15249,8 @@ ObjectPropertyRange( ObjectSomeValues AnnotationAssertion( ) AnnotationAssertion( "x has developmental potential involving y iff x is capable of a developmental process with output y. y may be the successor of x, or may be a different structure in the vicinity (as for example in the case of developmental induction)."@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002384") +AnnotationAssertion( "has_developmental_potential_involving") AnnotationAssertion(rdfs:label "has developmental potential involving"@en) SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15060,6 +15261,8 @@ ObjectPropertyRange( ) AnnotationAssertion( "x has potential to developmentrally contribute to y iff x developmentally contributes to y or x is capable of developmentally contributing to y"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002385") +AnnotationAssertion( "has_potential_to_developmentally_contribute_to") AnnotationAssertion(rdfs:label "has potential to developmentally contribute to"@en) SubObjectPropertyOf( ) @@ -15068,6 +15271,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "x has potential to developmentally induce y iff x developmentally induces y or x is capable of developmentally inducing y"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002386") +AnnotationAssertion( "has_potential_to_developmentally_induce") AnnotationAssertion(rdfs:label "has potential to developmentally induce"@en) SubObjectPropertyOf( ) @@ -15076,6 +15281,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "x has the potential to develop into y iff x develops into y or if x is capable of developing into y"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002387") +AnnotationAssertion( "has_potential_to_develop_into") AnnotationAssertion(rdfs:label "has potential to develop into"@en) SubObjectPropertyOf( ) @@ -15084,6 +15291,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "x has potential to directly develop into y iff x directly develops into y or x is capable of directly developing into y"@en) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002388") +AnnotationAssertion( "has_potential_to_directly_develop_into") AnnotationAssertion(rdfs:label "has potential to directly develop into"@en) SubObjectPropertyOf( ) @@ -15122,6 +15331,8 @@ AnnotationAssertion( ) AnnotationAssertion( "indirectly activates") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002407") +AnnotationAssertion( "indirectly_positively_regulates") AnnotationAssertion(rdfs:label "indirectly positively regulates"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_positively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15134,6 +15345,8 @@ AnnotationAssertion( ) AnnotationAssertion( "indirectly inhibits") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002409") +AnnotationAssertion( "indirectly_negatively_regulates") AnnotationAssertion(rdfs:label "indirectly negatively regulates"@en) AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Indirectly_negatively_regulates"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15160,6 +15373,8 @@ For the third, we consider the effect of the upstream process on the output(s) o Each of these 3 primitives can be composed to yield a cross-product of different relation types.") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") +AnnotationAssertion( "RO:0002410") +AnnotationAssertion( "causally_related_to") AnnotationAssertion(rdfs:label "causally related to"@en) # Object Property: (causally upstream of) @@ -15226,6 +15441,8 @@ TransitiveObjectProperty() AnnotationAssertion( "c involved in regulation of p if c is involved in some p' and p' regulates some p") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002428") +AnnotationAssertion( "involved_in_regulation_of") AnnotationAssertion(rdfs:label "involved in regulation of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15235,6 +15452,8 @@ SubObjectPropertyOf( "c involved in regulation of p if c is involved in some p' and p' positively regulates some p") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002429") +AnnotationAssertion( "involved_in_positive_regulation_of") AnnotationAssertion(rdfs:label "involved in positive regulation of") SubObjectPropertyOf( ) @@ -15243,6 +15462,8 @@ SubObjectPropertyOf( "c involved in regulation of p if c is involved in some p' and p' negatively regulates some p") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002430") +AnnotationAssertion( "involved_in_negative_regulation_of") AnnotationAssertion(rdfs:label "involved in negative regulation of") SubObjectPropertyOf( ) @@ -15252,6 +15473,8 @@ AnnotationAssertion( "OWL does not allow defining object properties via a Union") AnnotationAssertion( ) AnnotationAssertion( "involved in or reguates") +AnnotationAssertion( "RO:0002431") +AnnotationAssertion( "involved_in_or_involved_in_regulation_of") AnnotationAssertion(rdfs:label "involved in or involved in regulation of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15263,7 +15486,9 @@ AnnotationAssertion( ) Annotation( ) "c executes activity in d if and only if c enables p and p occurs_in d. Assuming no action at a distance by gene products, if a gene product enables (is capable of) a process that occurs in some structure, it must have at least some part in that structure.") AnnotationAssertion( ) AnnotationAssertion( "executes activity in") +AnnotationAssertion( "RO:0002432") AnnotationAssertion( "enables activity in") +AnnotationAssertion( "is_active_in") AnnotationAssertion(rdfs:comment "") AnnotationAssertion(rdfs:label "is active in") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Is_active_in"^^xsd:anyURI) @@ -15274,6 +15499,8 @@ SubObjectPropertyOf( "p contributes to morphology of w if and only if a change in the morphology of p entails a change in the morphology of w. Examples: every skull contributes to morphology of the head which it is a part of. Counter-example: nuclei do not generally contribute to the morphology of the cell they are part of, as they are buffered by cytoplasm.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002433") +AnnotationAssertion( "contributes_to_morphology_of") AnnotationAssertion(rdfs:label "contributes to morphology of") SubObjectPropertyOf( ) @@ -15284,8 +15511,10 @@ AnnotationAssertion( "This relation and all sub-relations can be applied to either (1) pairs of entities that are interacting at any moment of time (2) populations or species of entity whose members have the disposition to interact (3) classes whose members have the disposition to interact.") AnnotationAssertion( ) AnnotationAssertion( "Note that this relationship type, and sub-relationship types may be redundant with process terms from other ontologies. For example, the symbiotic relationship hierarchy parallels GO. The relations are provided as a convenient shortcut. Consider using the more expressive processual form to capture your data. In the future, these relations will be linked to their cognate processes through rules.") +AnnotationAssertion( "RO:0002434") AnnotationAssertion( "in pairwise interaction with") AnnotationAssertion( ) +AnnotationAssertion( "interacts_with") AnnotationAssertion(rdfs:label "interacts with") AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/"^^xsd:anyURI) AnnotationAssertion( "http://purl.obolibrary.org/obo/MI_0914"^^xsd:anyURI) @@ -15299,6 +15528,8 @@ AnnotationAssertion( ) AnnotationAssertion( "binds") AnnotationAssertion( "molecularly binds with") +AnnotationAssertion( "RO:0002436") +AnnotationAssertion( "molecularly_interacts_with") AnnotationAssertion(rdfs:label "molecularly interacts with") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion( "http://purl.obolibrary.org/obo/MI_0915"^^xsd:anyURI) @@ -15310,6 +15541,8 @@ SymmetricObjectProperty() AnnotationAssertion( "Axiomatization to GO to be added later") AnnotationAssertion( ) AnnotationAssertion( "An interaction relation between x and y in which x catalyzes a reaction in which a phosphate group is added to y.") +AnnotationAssertion( "RO:0002447") +AnnotationAssertion( "phosphorylates") AnnotationAssertion(rdfs:label "phosphorylates") SubObjectPropertyOf( ) @@ -15320,7 +15553,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002448") AnnotationAssertion( "molecularly controls") +AnnotationAssertion( "directly_regulates_activity_of") AnnotationAssertion(rdfs:label "directly regulates activity of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15334,7 +15569,9 @@ For example, A and B may be gene products and binding of B by A negatively regul AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "directly inhibits") +AnnotationAssertion( "RO:0002449") AnnotationAssertion( "molecularly decreases activity of") +AnnotationAssertion( "directly_negatively_regulates_activity_of") AnnotationAssertion(rdfs:label "directly negatively regulates activity of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15347,7 +15584,9 @@ For example, A and B may be gene products and binding of B by A positively regul AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "directly activates") +AnnotationAssertion( "RO:0002450") AnnotationAssertion( "molecularly increases activity of") +AnnotationAssertion( "directly_positively_regulates_activity_of") AnnotationAssertion(rdfs:label "directly positively regulates activity of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15357,6 +15596,8 @@ ObjectPropertyRange( ) AnnotationAssertion( "This property or its subproperties is not to be used directly. These properties exist as helper properties that are used to support OWL reasoning.") +AnnotationAssertion( "RO:0002464") +AnnotationAssertion( "helper_property_(not_for_use_in_curation)") AnnotationAssertion(rdfs:label "helper property (not for use in curation)") # Object Property: (composed primarily of) @@ -15366,7 +15607,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002473") AnnotationAssertion( ) +AnnotationAssertion( "composed_primarily_of") AnnotationAssertion(rdfs:label "composed primarily of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15378,6 +15621,8 @@ AnnotationAssertion( "c is a child nucleus of d if and only if c and d are both nuclei and parts of cells c' and d', where c' is derived from d' by mitosis and the genetic material in c is a copy of the generic material in d") AnnotationAssertion( ) AnnotationAssertion( "This relation is primarily used in the worm anatomy ontology for representing lineage at the level of nuclei. However, it is applicable to any organismal cell lineage.") +AnnotationAssertion( "RO:0002476") +AnnotationAssertion( "child_nucleus_of") AnnotationAssertion(rdfs:label "child nucleus of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15387,6 +15632,8 @@ ObjectPropertyRange( "A child nucleus relationship in which the cells are part of a hermaphroditic organism") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002477") +AnnotationAssertion( "child_nucleus_of_in_hermaphrodite") AnnotationAssertion(rdfs:label "child nucleus of in hermaphrodite") SubObjectPropertyOf( ) @@ -15394,6 +15641,8 @@ SubObjectPropertyOf( "A child nucleus relationship in which the cells are part of a male organism") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002478") +AnnotationAssertion( "child_nucleus_of_in_male") AnnotationAssertion(rdfs:label "child nucleus of in male") SubObjectPropertyOf( ) @@ -15401,7 +15650,9 @@ SubObjectPropertyOf( "p has part that occurs in c if and only if there exists some p1, such that p has_part p1, and p1 occurs in c.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002479") AnnotationAssertion( ) +AnnotationAssertion( "has_part_that_occurs_in") AnnotationAssertion(rdfs:label "has part that occurs in") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15409,6 +15660,8 @@ ObjectPropertyRange( (is kinase activity) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002481") +AnnotationAssertion( "is_kinase_activity") AnnotationAssertion(rdfs:label "is kinase activity") SubObjectPropertyOf( ) @@ -15416,6 +15669,8 @@ SubObjectPropertyOf( "See notes for inverse relation") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002485") +AnnotationAssertion( "receives_input_from") AnnotationAssertion(rdfs:label "receives input from") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15424,6 +15679,8 @@ InverseObjectProperties( "This is an exploratory relation. The label is taken from the FMA. It needs aligned with the neuron-specific relations such as has postsynaptic terminal in.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002486") +AnnotationAssertion( "sends_output_to") AnnotationAssertion(rdfs:label "sends output to") SubObjectPropertyOf( ) @@ -15431,6 +15688,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, typically connecting an anatomical entity to a biological process or developmental stage.") +AnnotationAssertion( "RO:0002487") +AnnotationAssertion( "relation_between_physical_entity_and_a_process_or_stage") AnnotationAssertion(rdfs:label "relation between physical entity and a process or stage") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -15439,6 +15698,8 @@ ObjectPropertyRange( "x existence starts during y if and only if the time point at which x starts is after or equivalent to the time point at which y starts and before or equivalent to the time point at which y ends. Formally: x existence starts during y iff α(x) >= α(y) & α(x) <= ω(y).") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002488") +AnnotationAssertion( "existence_starts_during") AnnotationAssertion(rdfs:label "existence starts during") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15447,6 +15708,8 @@ SubObjectPropertyOf( "x starts ends with y if and only if the time point at which x starts is equivalent to the time point at which y starts. Formally: x existence starts with y iff α(x) = α(y).") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002489") +AnnotationAssertion( "existence_starts_with") AnnotationAssertion(rdfs:label "existence starts with") SubObjectPropertyOf( ) @@ -15454,6 +15717,8 @@ SubObjectPropertyOf( "x existence overlaps y if and only if either (a) the start of x is part of y or (b) the end of x is part of y. Formally: x existence starts and ends during y iff (α(x) >= α(y) & α(x) <= ω(y)) OR (ω(x) <= ω(y) & ω(x) >= α(y))") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002490") +AnnotationAssertion( "existence_overlaps") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence overlaps") SubObjectPropertyOf( ) @@ -15462,7 +15727,9 @@ SubObjectPropertyOf( "x exists during y if and only if: 1) the time point at which x begins to exist is after or equal to the time point at which y begins and 2) the time point at which x ceases to exist is before or equal to the point at which y ends. Formally: x existence starts and ends during y iff α(x) >= α(y) & α(x) <= ω(y) & ω(x) <= ω(y) & ω(x) >= α(y)") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002491") AnnotationAssertion( "exists during") +AnnotationAssertion( "existence_starts_and_ends_during") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence starts and ends during") SubObjectPropertyOf( ) @@ -15472,6 +15739,8 @@ SubObjectPropertyOf( "x existence ends during y if and only if the time point at which x ends is before or equivalent to the time point at which y ends and after or equivalent to the point at which y starts. Formally: x existence ends during y iff ω(x) <= ω(y) and ω(x) >= α(y).") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002492") +AnnotationAssertion( "existence_ends_during") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence ends during") SubObjectPropertyOf( ) @@ -15481,6 +15750,8 @@ SubObjectPropertyOf( "x existence ends with y if and only if the time point at which x ends is equivalent to the time point at which y ends. Formally: x existence ends with y iff ω(x) = ω(y).") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002493") +AnnotationAssertion( "existence_ends_with") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence ends with") SubObjectPropertyOf( ) @@ -15489,6 +15760,8 @@ SubObjectPropertyOf( "x transformation of y if x is the immediate transformation of y, or is linked to y through a chain of transformation relationships") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002494") +AnnotationAssertion( "transformation_of") AnnotationAssertion(rdfs:label "transformation of") SubObjectPropertyOf( ) TransitiveObjectProperty() @@ -15498,6 +15771,8 @@ TransitiveObjectProperty() AnnotationAssertion( "x immediate transformation of y iff x immediately succeeds y temporally at a time boundary t, and all of the matter present in x at t is present in y at t, and all the matter in y at t is present in x at t") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002495") +AnnotationAssertion( "immediate_transformation_of") AnnotationAssertion(rdfs:label "immediate transformation of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15506,6 +15781,8 @@ SubObjectPropertyOf( "x existence starts during or after y if and only if the time point at which x starts is after or equivalent to the time point at which y starts. Formally: x existence starts during or after y iff α (x) >= α (y).") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002496") +AnnotationAssertion( "existence_starts_during_or_after") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence starts during or after") SubObjectPropertyOf( ) @@ -15514,6 +15791,8 @@ SubObjectPropertyOf( "x existence ends during or before y if and only if the time point at which x ends is before or equivalent to the time point at which y ends.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002497") +AnnotationAssertion( "existence_ends_during_or_before") AnnotationAssertion(rdfs:comment "The relations here were created based on work originally by Fabian Neuhaus and David Osumi-Sutherland. The work has not yet been vetted and errors in definitions may have occurred during transcription.") AnnotationAssertion(rdfs:label "existence ends during or before") SubObjectPropertyOf( ) @@ -15522,6 +15801,8 @@ SubObjectPropertyOf( "A relationship between a material entity and a process where the material entity has some causal role that influences the process") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002500") +AnnotationAssertion( "causal_agent_in_process") AnnotationAssertion(rdfs:label "causal agent in process") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15532,6 +15813,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") +AnnotationAssertion( "RO:0002501") +AnnotationAssertion( "causal_relation_between_processes") AnnotationAssertion(rdfs:label "causal relation between processes") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15540,6 +15823,8 @@ ObjectPropertyRange( (depends on) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002502") +AnnotationAssertion( "depends_on") AnnotationAssertion(rdfs:label "depends on") AnnotationAssertion(rdfs:seeAlso ) @@ -15549,6 +15834,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") +AnnotationAssertion( "RO:0002506") +AnnotationAssertion( "causal_relation_between_entities") AnnotationAssertion(rdfs:label "causal relation between entities") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15561,6 +15848,8 @@ AnnotationAssertion( ) AnnotationAssertion( "has supporting framework") AnnotationAssertion( "The skeleton of a structure may be a true skeleton (for example, the bony skeleton of a hand) or any kind of support framework (the hydrostatic skeleton of a sea star, the exoskeleton of an insect, the cytoskeleton of a cell).") +AnnotationAssertion( "RO:0002551") +AnnotationAssertion( "has_skeleton") AnnotationAssertion(rdfs:label "has skeleton") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15574,6 +15863,8 @@ ObjectPropertyRange(Annotation( "Thi AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "causally influenced by (entity-centric)") +AnnotationAssertion( "RO:0002559") +AnnotationAssertion( "causally_influenced_by") AnnotationAssertion(rdfs:label "causally influenced by") SubObjectPropertyOf( ) InverseObjectProperties( ) @@ -15581,6 +15872,8 @@ InverseObjectProperties( (interaction relation helper property) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002563") +AnnotationAssertion( "interaction_relation_helper_property") AnnotationAssertion(rdfs:label "interaction relation helper property") AnnotationAssertion(rdfs:seeAlso ) AnnotationAssertion(rdfs:seeAlso "http://purl.obolibrary.org/obo/ro/docs/interaction-relations/"^^xsd:anyURI) @@ -15589,6 +15882,8 @@ SubObjectPropertyOf( (molecular interaction relation helper property) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002564") +AnnotationAssertion( "molecular_interaction_relation_helper_property") AnnotationAssertion(rdfs:label "molecular interaction relation helper property") SubObjectPropertyOf( ) @@ -15614,6 +15909,8 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "causally influences (entity-centric)") +AnnotationAssertion( "RO:0002566") +AnnotationAssertion( "causally_influences") AnnotationAssertion(rdfs:label "causally influences") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15624,6 +15921,8 @@ ObjectPropertyRange( "A relation that holds between elements of a musculoskeletal system or its analogs.") AnnotationAssertion( ) AnnotationAssertion( "Do not use this relation directly. It is ended as a grouping for a diverse set of relations, all involving the biomechanical processes.") +AnnotationAssertion( "RO:0002567") +AnnotationAssertion( "biomechanically_related_to") AnnotationAssertion(rdfs:label "biomechanically related to") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15634,6 +15933,8 @@ ObjectPropertyRange( "m1 has_muscle_antagonist m2 iff m1 has_muscle_insertion s, m2 has_muscle_insection s, m1 acts in opposition to m2, and m2 is responsible for returning the structure to its initial position.") AnnotationAssertion( ) AnnotationAssertion( "Wikipedia:Antagonist_(muscle)") +AnnotationAssertion( "RO:0002568") +AnnotationAssertion( "has_muscle_antagonist") AnnotationAssertion(rdfs:label "has muscle antagonist") SubObjectPropertyOf( ) @@ -15641,8 +15942,10 @@ SubObjectPropertyOf( "inverse of branching part of") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002569") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "has_branching_part") AnnotationAssertion(rdfs:label "has branching part") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15654,7 +15957,9 @@ AnnotationAssertion( ) AnnotationAssertion( "UBERON:cjm") AnnotationAssertion( "This relation holds between a thing with a 'conduit' (e.g. a bone foramen) and a 'conduee' (for example, a nerve) such that at the time the relationship holds, the conduee has two ends sticking out either end of the conduit. It should therefore note be used for objects that move through the conduit but whose spatial extent does not span the passage. For example, it would not be used for a mountain that contains a long tunnel through which trains pass. Nor would we use it for a digestive tract and objects such as food that pass through.") +AnnotationAssertion( "RO:0002570") AnnotationAssertion( ) +AnnotationAssertion( "conduit_for") AnnotationAssertion(rdfs:label "conduit for") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15665,7 +15970,9 @@ ObjectPropertyRange( "x lumen_of y iff x is the space or substance that is part of y and does not cross any of the inner membranes or boundaries of y that is maximal with respect to the volume of the convex hull.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002571") AnnotationAssertion( ) +AnnotationAssertion( "lumen_of") AnnotationAssertion(rdfs:label "lumen of") SubObjectPropertyOf( ) ObjectPropertyRange( ) @@ -15674,7 +15981,9 @@ ObjectPropertyRange( "s is luminal space of x iff s is lumen_of x and s is an immaterial entity") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002572") AnnotationAssertion( ) +AnnotationAssertion( "luminal_space_of") AnnotationAssertion(rdfs:label "luminal space of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15683,7 +15992,9 @@ ObjectPropertyDomain( "inverse of has skeleton") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002576") AnnotationAssertion( ) +AnnotationAssertion( "skeleton_of") AnnotationAssertion(rdfs:label "skeleton of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15712,6 +16023,8 @@ SubObjectPropertyOf( "gland SubClassOf 'has part structure that is capable of' some 'secretion by cell'") AnnotationAssertion( "s 'has part structure that is capable of' p if and only if there exists some part x such that s 'has part' x and x 'capable of' p") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002584") +AnnotationAssertion( "has_part_structure_that_is_capable_of") AnnotationAssertion(rdfs:label "has part structure that is capable of") SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -15719,6 +16032,8 @@ SubObjectPropertyOf( (results in breakdown of) AnnotationAssertion( "p results in breakdown of c if and only if the execution of p leads to c no longer being present at the end of p") +AnnotationAssertion( "RO:0002586") +AnnotationAssertion( "results_in_breakdown_of") AnnotationAssertion(rdfs:label "results in breakdown of") SubObjectPropertyOf( ) @@ -15762,6 +16077,8 @@ AnnotationAssertion( "Do not use this relation directly. It is intended as a grouping for a diverse set of relations, all involving cause and effect.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0002595") +AnnotationAssertion( "causal_relation_between_material_entity_and_a_process") AnnotationAssertion(rdfs:label "causal relation between material entity and a process") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -15772,6 +16089,8 @@ ObjectPropertyRange( "pyrethroid -> growth") AnnotationAssertion( "Holds between c and p if and only if c is capable of some activity a, and a regulates p.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002596") +AnnotationAssertion( "capable_of_regulating") AnnotationAssertion(rdfs:label "capable of regulating") SubObjectPropertyOf( ) @@ -15779,6 +16098,8 @@ SubObjectPropertyOf( "Holds between c and p if and only if c is capable of some activity a, and a negatively regulates p.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002597") +AnnotationAssertion( "capable_of_negatively_regulating") AnnotationAssertion(rdfs:label "capable of negatively regulating") SubObjectPropertyOf( ) @@ -15787,6 +16108,8 @@ SubObjectPropertyOf( "renin -> arteriolar smooth muscle contraction") AnnotationAssertion( "Holds between c and p if and only if c is capable of some activity a, and a positively regulates p.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0002598") +AnnotationAssertion( "capable_of_positively_regulating") AnnotationAssertion(rdfs:label "capable of positively regulating") SubObjectPropertyOf( ) @@ -15915,6 +16238,8 @@ SubObjectPropertyOf( "Holds between an entity and an process P where the entity enables some larger compound process, and that larger process has-part P.") AnnotationAssertion( ) AnnotationAssertion( "2018-01-25T23:20:13Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004031") +AnnotationAssertion( "enables_subfunction") AnnotationAssertion(rdfs:label "enables subfunction") SubObjectPropertyOf( ) @@ -15923,7 +16248,9 @@ SubObjectPropertyOf( ) AnnotationAssertion( ) AnnotationAssertion( "2018-01-26T23:49:30Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004032") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of_or_within,_positive_effect") AnnotationAssertion(rdfs:label "acts upstream of or within, positive effect") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_positive_effect"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15933,7 +16260,9 @@ SubObjectPropertyOf( ) AnnotationAssertion( ) AnnotationAssertion( "2018-01-26T23:49:51Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004033") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of_or_within,_negative_effect") AnnotationAssertion(rdfs:label "acts upstream of or within, negative effect") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of_or_within,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15944,7 +16273,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2018-01-26T23:53:14Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004034") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of,_positive_effect") AnnotationAssertion(rdfs:label "acts upstream of, positive effect") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_positive_effect"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15956,7 +16287,9 @@ AnnotationAssertion( ) AnnotationAssertion( ) AnnotationAssertion( "2018-01-26T23:53:22Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004035") AnnotationAssertion( ) +AnnotationAssertion( "acts_upstream_of,_negative_effect") AnnotationAssertion(rdfs:label "acts upstream of, negative effect") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Acts_upstream_of,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15967,6 +16300,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( ) AnnotationAssertion( "2018-03-13T23:55:05Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004046") +AnnotationAssertion( "causally_upstream_of_or_within,_negative_effect") AnnotationAssertion(rdfs:label "causally upstream of or within, negative effect") AnnotationAssertion(rdfs:seeAlso "https://wiki.geneontology.org/Causally_upstream_of_or_within,_negative_effect"^^xsd:anyURI) SubObjectPropertyOf( ) @@ -15976,6 +16311,8 @@ SubObjectPropertyOf( ) AnnotationAssertion( ) AnnotationAssertion( "2018-03-13T23:55:19Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0004047") +AnnotationAssertion( "causally_upstream_of_or_within,_positive_effect") AnnotationAssertion(rdfs:label "causally upstream of or within, positive effect") AnnotationAssertion(rdfs:seeAlso ) SubObjectPropertyOf( ) @@ -15984,6 +16321,8 @@ SubObjectPropertyOf( "The entity A has an activity that regulates an activity of the entity B. For example, A and B are gene products where the catalytic activity of A regulates the kinase activity of B.") AnnotationAssertion( ) +AnnotationAssertion( "RO:0011002") +AnnotationAssertion( "regulates_activity_of") AnnotationAssertion(rdfs:label "regulates activity of") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -16025,6 +16364,8 @@ SubObjectPropertyOf( "p is indirectly causally upstream of q iff p is causally upstream of q and there exists some process r such that p is causally upstream of r and r is causally upstream of q.") AnnotationAssertion( ) AnnotationAssertion( "2022-09-26T06:07:17Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0012011") +AnnotationAssertion( "indirectly_causally_upstream_of") AnnotationAssertion(rdfs:label "indirectly causally upstream of"@en) SubObjectPropertyOf( ) @@ -16033,6 +16374,8 @@ SubObjectPropertyOf( "p indirectly regulates q iff p is indirectly causally upstream of q and p regulates q.") AnnotationAssertion( ) AnnotationAssertion( "2022-09-26T06:08:01Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0012012") +AnnotationAssertion( "indirectly_regulates") AnnotationAssertion(rdfs:label "indirectly regulates"@en) SubObjectPropertyOf( ) SubObjectPropertyOf( ) @@ -16042,13 +16385,17 @@ SubObjectPropertyOf( "A relationship between a neuron and a region, where the neuron has a functionally relevant number of input and/or output synapses in that region.") AnnotationAssertion( ) AnnotationAssertion( "2020-07-17T09:26:52Z"^^xsd:dateTime) +AnnotationAssertion( "RO:0013001") AnnotationAssertion( "has synaptic input or output in") +AnnotationAssertion( "has_synaptic_IO_in_region") AnnotationAssertion(rdfs:label "has synaptic IO in region"@en) SubObjectPropertyOf( ) # Object Property: (different in magnitude relative to) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "q1 different_in_magnitude_relative_to q2 if and only if magnitude(q1) NOT =~ magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.") +AnnotationAssertion( "RO:0015006") +AnnotationAssertion( "different_in_magnitude_relative_to") AnnotationAssertion(rdfs:label "different in magnitude relative to") ObjectPropertyDomain( ) ObjectPropertyRange( ) @@ -16056,6 +16403,8 @@ ObjectPropertyRange( (increased in magnitude relative to) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "q1 increased_in_magnitude_relative_to q2 if and only if magnitude(q1) > magnitude(q2). Here, magnitude(q) is a function that maps a quality to a unit-invariant scale.") +AnnotationAssertion( "RO:0015007") +AnnotationAssertion( "increased_in_magnitude_relative_to") AnnotationAssertion(rdfs:comment "This relation is used to determine the 'directionality' of relative qualities such as 'increased strength', relative to the parent type, 'strength'.") AnnotationAssertion(rdfs:label "increased in magnitude relative to") SubObjectPropertyOf( ) @@ -16065,6 +16414,8 @@ ObjectPropertyRange( (has cross section) AnnotationAssertion(Annotation( "https://orcid.org/0000-0002-6601-2165") "s3 has_cross_section s3 if and only if : there exists some 2d plane that intersects the bearer of s3, and the impression of s3 upon that plane has shape quality s2.") +AnnotationAssertion( "RO:0015011") +AnnotationAssertion( "has_cross_section") AnnotationAssertion(rdfs:comment "Example: a spherical object has the quality of being spherical, and the spherical quality has_cross_section round.") AnnotationAssertion(rdfs:label "has cross section") @@ -16074,6 +16425,8 @@ AnnotationAssertion( "PMID:19243617") "A relation between a cell and molecule or complex such that every instance of the cell has a high number of instances of that molecule expressed on the cell surface.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0015015") +AnnotationAssertion( "has_high_plasma_membrane_amount") AnnotationAssertion(rdfs:label "has high plasma membrane amount") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -16084,6 +16437,8 @@ AnnotationAssertion( "PMID:19243617") "A relation between a cell and molecule or complex such that every instance of the cell has a low number of instances of that molecule expressed on the cell surface.") AnnotationAssertion( ) AnnotationAssertion( ) +AnnotationAssertion( "RO:0015016") +AnnotationAssertion( "has_low_plasma_membrane_amount") AnnotationAssertion(rdfs:label "has low plasma membrane amount") SubObjectPropertyOf( ) ObjectPropertyDomain( ) @@ -16098,6 +16453,8 @@ AnnotationAssertion( "See github ticket https://github.com/oborel/obo-relations/issues/497") AnnotationAssertion( "2021-11-08T12:00:00Z"^^xsd:dateTime) AnnotationAssertion( "utilizes") +AnnotationAssertion( "RO:0017001") +AnnotationAssertion( "device_utilizes_material") AnnotationAssertion(rdfs:label "device utilizes material"@en) # Object Property: (regulates characteristic) @@ -137693,6 +138050,8 @@ SubClassOf( (root) AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "PMID:30365038") +AnnotationAssertion( "PMID:32761142") AnnotationAssertion( "ncbi_taxonomy") AnnotationAssertion(Annotation( ) "all") AnnotationAssertion( "NCBITaxon:1") @@ -138009,7 +138368,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:119825") AnnotationAssertion(rdfs:label "Mephitidae") -SubClassOf( ) +SubClassOf( ) # Class: (Ecdysozoa) @@ -139079,6 +139438,25 @@ AnnotationAssertion( "Cyprinoidei") SubClassOf( ) +# Class: (Pinnipedia) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion(Annotation( ) "pinnipeds") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3072905") +AnnotationAssertion(rdfs:label "Pinnipedia") +SubClassOf( ) + +# Class: (Musteloidea) + +AnnotationAssertion( ) +AnnotationAssertion( "GC_ID:1") +AnnotationAssertion( "ncbi_taxonomy") +AnnotationAssertion( "NCBITaxon:3072906") +AnnotationAssertion(rdfs:label "Musteloidea") +SubClassOf( ) + # Class: (Tetraodontiformes) AnnotationAssertion( ) @@ -142653,7 +143031,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9655") AnnotationAssertion(rdfs:label "Mustelidae") -SubClassOf( ) +SubClassOf( ) # Class: (Mustela) @@ -142717,7 +143095,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9705") AnnotationAssertion(rdfs:label "Odobenidae") -SubClassOf( ) +SubClassOf( ) # Class: (Phocidae) @@ -142731,7 +143109,7 @@ AnnotationAssertion(Annotation( "ncbi_taxonomy") AnnotationAssertion( "NCBITaxon:9709") AnnotationAssertion(rdfs:label "Phocidae") -SubClassOf( ) +SubClassOf( ) # Class: (Cetacea) @@ -144994,6 +145372,7 @@ AnnotationAssertion(Annotation( "PR:000001006") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C") +AnnotationAssertion( ) SubClassOf( ) # Class: (integrin alpha-M) @@ -145013,6 +145392,7 @@ AnnotationAssertion(Annotation( "PR:000001012") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "integrin alpha-M") +AnnotationAssertion( ) SubClassOf( ) # Class: (integrin alpha-X) @@ -145030,6 +145410,7 @@ AnnotationAssertion(Annotation( "PR:000001013") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "integrin alpha-X") +AnnotationAssertion( ) SubClassOf( ) # Class: (receptor-type tyrosine-protein phosphatase C isoform CD45RABC) @@ -145043,6 +145424,7 @@ AnnotationAssertion( "PR:000001014") AnnotationAssertion(rdfs:comment "Category=sequence. Requested by=CL. Note: This isoform includes the region encoded by the variable exons 4(A), 5(B), and 6(C).") AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45RABC") +AnnotationAssertion( ) SubClassOf( ) # Class: (receptor-type tyrosine-protein phosphatase C isoform CD45RA) @@ -145054,6 +145436,7 @@ AnnotationAssertion( "PR:000001015") AnnotationAssertion(rdfs:comment "Category=sequence. Requested by=CL. Note: This isoform includes the region encoded by the variable exon 4(A), and lacks the region encoded by exons 5(B) and 6(C).") AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein phosphatase C isoform CD45RA") +AnnotationAssertion( ) SubClassOf( ) # Class: (CD3 subunit with immunoglobulin domain) @@ -145114,6 +145497,7 @@ AnnotationAssertion(Annotation( "PR:000001024") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "neural cell adhesion molecule 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (CD2 molecule) @@ -145152,6 +145536,7 @@ AnnotationAssertion(Annotation( "PR:000001084") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "T-cell surface glycoprotein CD8 alpha chain") +AnnotationAssertion( ) SubClassOf( ) # Class: (rhodopsin-like G-protein coupled receptor) @@ -145198,6 +145583,7 @@ AnnotationAssertion(Annotation( "PR:000001199") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "C-C chemokine receptor type 2") +AnnotationAssertion( ) SubClassOf( ) # Class: (CX3C chemokine receptor 1) @@ -145220,6 +145606,7 @@ AnnotationAssertion(Annotation( "PR:000001206") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "CX3C chemokine receptor 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (ADP-ribosyl cyclase) @@ -145264,6 +145651,7 @@ AnnotationAssertion(Annotation( "PR:000001293") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "C-type lectin domain family 4 member K") +AnnotationAssertion( ) SubClassOf( ) # Class: (CD44 molecule) @@ -145345,6 +145733,7 @@ AnnotationAssertion(Annotation( "PR:000001332") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "carcinoembryonic antigen-related cell adhesion molecule 8") +AnnotationAssertion( ) SubClassOf( ) # Class: (complement receptor type 2) @@ -145362,6 +145751,7 @@ AnnotationAssertion(Annotation( "PR:000001338") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "complement receptor type 2") +AnnotationAssertion( ) SubClassOf( ) # Class: (endoglin) @@ -145378,6 +145768,7 @@ AnnotationAssertion(Annotation( "PR:000001345") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "endoglin") +AnnotationAssertion( ) SubClassOf( ) # Class: (glycophorin) @@ -145418,6 +145809,7 @@ AnnotationAssertion(Annotation( "PR:000001380") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "interleukin-2 receptor subunit alpha") +AnnotationAssertion( ) SubClassOf( ) # Class: (ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1) @@ -145439,6 +145831,7 @@ AnnotationAssertion( "PR:000001408") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (cadherin-5) @@ -145453,6 +145846,7 @@ AnnotationAssertion( "PR:000001444") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "cadherin-5") +AnnotationAssertion( ) SubClassOf( ) # Class: (glycophorin-A) @@ -145468,6 +145862,7 @@ AnnotationAssertion(Annotation( "PR:000001460") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "glycophorin-A") +AnnotationAssertion( ) SubClassOf( ) # Class: (low affinity immunoglobulin gamma Fc region receptor II) @@ -145505,6 +145900,7 @@ AnnotationAssertion(Annotation( "PR:000001481") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "low affinity immunoglobulin gamma Fc region receptor II-b") +AnnotationAssertion( ) SubClassOf( ) # Class: (low affinity immunoglobulin gamma Fc region receptor III) @@ -145558,6 +145954,7 @@ AnnotationAssertion(Annotation( "PR:000001786") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "prominin-1") +AnnotationAssertion( ) SubClassOf( ) # Class: (CD59-like glycoprotein) @@ -145624,6 +146021,7 @@ AnnotationAssertion(Annotation( "PR:000001839") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "T-cell surface glycoprotein CD5") +AnnotationAssertion( ) SubClassOf( ) # Class: (Thy-1 membrane glycoprotein) @@ -145639,6 +146037,7 @@ AnnotationAssertion(Annotation( "PR:000001843") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "Thy-1 membrane glycoprotein") +AnnotationAssertion( ) SubClassOf( ) # Class: (cathepsin K) @@ -145655,6 +146054,7 @@ AnnotationAssertion( "PR:000001850") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "cathepsin K") +AnnotationAssertion( ) SubClassOf( ) # Class: (immunoglobulin iota chain) @@ -145672,6 +146072,7 @@ AnnotationAssertion(Annotation( "PR:000001858") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "immunoglobulin iota chain") +AnnotationAssertion( ) SubClassOf( ) # Class: (immunoglobulin lambda-like polypeptide 1) @@ -145689,6 +146090,7 @@ AnnotationAssertion( "PR:000001859") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "immunoglobulin lambda-like polypeptide 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (interleukin-3 receptor class 2 alpha chain) @@ -145727,6 +146129,7 @@ AnnotationAssertion(Annotation( "PR:000001867") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "interleukin-5 receptor subunit alpha") +AnnotationAssertion( ) SubClassOf( ) # Class: (interleukin-7 receptor subunit alpha) @@ -145745,6 +146148,7 @@ AnnotationAssertion( "PR:000001869") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "interleukin-7 receptor subunit alpha") +AnnotationAssertion( ) SubClassOf( ) # Class: (KLRB1-like protein) @@ -145774,6 +146178,7 @@ AnnotationAssertion(Annotation( "PR:000001879") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "leukosialin") +AnnotationAssertion( ) SubClassOf( ) # Class: (low affinity immunoglobulin epsilon Fc receptor) @@ -145797,6 +146202,7 @@ AnnotationAssertion(Annotation( "PR:000001880") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "low affinity immunoglobulin epsilon Fc receptor") +AnnotationAssertion( ) SubClassOf( ) # Class: (membrane alanyl aminopeptidase-like metallopeptidase) @@ -145856,6 +146262,7 @@ AnnotationAssertion(Annotation( "PR:000001896") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "natural killer cell receptor 2B4") +AnnotationAssertion( ) SubClassOf( ) # Class: (neprilysin) @@ -145879,6 +146286,7 @@ AnnotationAssertion(Annotation( "PR:000001898") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "neprilysin") +AnnotationAssertion( ) SubClassOf( ) # Class: (paired box protein PAX-5) @@ -145892,6 +146300,7 @@ AnnotationAssertion(Annotation( "PR:000001903") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "paired box protein PAX-5") +AnnotationAssertion( ) SubClassOf( ) # Class: (scavenger receptor cysteine-rich type 1 protein M130) @@ -145904,6 +146313,7 @@ AnnotationAssertion(Annotation( "PR:000001925") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "scavenger receptor cysteine-rich type 1 protein M130") +AnnotationAssertion( ) SubClassOf( ) # Class: (signal transducer CD24) @@ -145923,6 +146333,7 @@ AnnotationAssertion(Annotation( "PR:000001932") AnnotationAssertion(rdfs:comment "Category=gene. The mouse ortholog is Cd24a. Mouse protein Cd24b likely also orthologous. Currently it is not in UniProt. Requested by=CL.") AnnotationAssertion(rdfs:label "signal transducer CD24") +AnnotationAssertion( ) SubClassOf( ) # Class: (syndecan-1) @@ -145938,6 +146349,7 @@ AnnotationAssertion(Annotation( "PR:000001935") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "syndecan-1") +AnnotationAssertion( ) SubClassOf( ) # Class: (tartrate-resistant acid phosphatase type 5) @@ -145955,6 +146367,7 @@ AnnotationAssertion(Annotation( "PR:000001937") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "tartrate-resistant acid phosphatase type 5") +AnnotationAssertion( ) SubClassOf( ) # Class: (thrombomodulin-like receptor) @@ -145979,6 +146392,7 @@ AnnotationAssertion(Annotation( "PR:000001944") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "transcription factor PU.1") +AnnotationAssertion( ) SubClassOf( ) # Class: (transferrin receptor protein 1) @@ -145996,6 +146410,7 @@ AnnotationAssertion(Annotation( "PR:000001945") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "transferrin receptor protein 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (tumor necrosis factor receptor superfamily member 11A) @@ -146013,6 +146428,7 @@ AnnotationAssertion(Annotation( "PR:000001954") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "tumor necrosis factor receptor superfamily member 11A") +AnnotationAssertion( ) SubClassOf( ) # Class: (CD27 molecule) @@ -146047,6 +146463,7 @@ AnnotationAssertion(Annotation( "PR:000001969") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "urokinase plasminogen activator surface receptor") +AnnotationAssertion( ) SubClassOf( ) # Class: (vascular endothelial growth factor receptor) @@ -146082,6 +146499,7 @@ AnnotationAssertion(Annotation( "PR:000002001") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "receptor-type tyrosine-protein kinase FLT3") +AnnotationAssertion( ) SubClassOf( ) # Class: (complement component C1q receptor) @@ -146106,6 +146524,7 @@ AnnotationAssertion(Annotation( "PR:000002037") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "complement component C1q receptor") +AnnotationAssertion( ) SubClassOf( ) # Class: (glutamyl aminopeptidase) @@ -146123,6 +146542,7 @@ AnnotationAssertion( "PR:000002039") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "glutamyl aminopeptidase") +AnnotationAssertion( ) SubClassOf( ) # Class: (macrophage colony-stimulating factor 1 receptor) @@ -146143,6 +146563,7 @@ AnnotationAssertion(Annotation( "PR:000002062") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "macrophage colony-stimulating factor 1 receptor") +AnnotationAssertion( ) SubClassOf( ) # Class: (mast/stem cell growth factor receptor) @@ -146180,6 +146601,7 @@ AnnotationAssertion(Annotation( "PR:000002112") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "vascular endothelial growth factor receptor 2") +AnnotationAssertion( ) SubClassOf( ) # Class: (Ly-6-like protein) @@ -146277,6 +146699,7 @@ AnnotationAssertion(Annotation( "PR:000003457") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "V(D)J recombination-activating protein 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (V(D)J recombination-activating protein 2) @@ -146288,6 +146711,7 @@ AnnotationAssertion( "PR:000003460") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "V(D)J recombination-activating protein 2") +AnnotationAssertion( ) SubClassOf( ) # Class: (lactosylceramide 4-alpha-galactosyltransferase) @@ -146308,6 +146732,7 @@ AnnotationAssertion(Annotation( "PR:000003516") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "lactosylceramide 4-alpha-galactosyltransferase") +AnnotationAssertion( ) SubClassOf( ) # Class: (CCAAT/enhancer-binding protein alpha) @@ -146320,6 +146745,7 @@ AnnotationAssertion(Annotation( "PR:000005307") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "CCAAT/enhancer-binding protein alpha") +AnnotationAssertion( ) SubClassOf( ) # Class: (DNA nucleotidylexotransferase) @@ -146334,6 +146760,7 @@ AnnotationAssertion(Annotation( "PR:000006611") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "DNA nucleotidylexotransferase") +AnnotationAssertion( ) SubClassOf( ) # Class: (fibroblast growth factor 8) @@ -146349,6 +146776,7 @@ AnnotationAssertion( "PR:000007499") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "fibroblast growth factor 8") +AnnotationAssertion( ) SubClassOf( ) # Class: (protein c-Fos) @@ -146364,6 +146792,7 @@ AnnotationAssertion(Annotation( "PR:000007597") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "protein c-Fos") +AnnotationAssertion( ) SubClassOf( ) # Class: (forkhead box protein N1) @@ -146383,6 +146812,7 @@ AnnotationAssertion( "PR:000007636") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "forkhead box protein N1") +AnnotationAssertion( ) SubClassOf( ) # Class: (erythroid transcription factor) @@ -146400,6 +146830,7 @@ AnnotationAssertion(Annotation( "PR:000007857") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "erythroid transcription factor") +AnnotationAssertion( ) SubClassOf( ) # Class: (endothelial transcription factor GATA-2) @@ -146411,6 +146842,7 @@ AnnotationAssertion( "PR:000007858") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "endothelial transcription factor GATA-2") +AnnotationAssertion( ) SubClassOf( ) # Class: (glial fibrillary acidic protein) @@ -146421,6 +146853,7 @@ AnnotationAssertion( "PR:000007939") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "glial fibrillary acidic protein") +AnnotationAssertion( ) SubClassOf( ) # Class: (insulin gene translation product) @@ -146432,6 +146865,7 @@ AnnotationAssertion( "PR:000009054") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "insulin gene translation product") +AnnotationAssertion( ) SubClassOf( ) # Class: (integrin alpha-IIb) @@ -146449,6 +146883,7 @@ AnnotationAssertion(Annotation( "PR:000009127") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "integrin alpha-IIb") +AnnotationAssertion( ) SubClassOf( ) # Class: (lactotransferrin) @@ -146463,6 +146898,7 @@ AnnotationAssertion(Annotation( "PR:000009978") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "lactotransferrin") +AnnotationAssertion( ) SubClassOf( ) # Class: (myelin basic protein) @@ -146476,6 +146912,7 @@ AnnotationAssertion(Annotation( "PR:000010228") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "myelin basic protein") +AnnotationAssertion( ) SubClassOf( ) # Class: (nuclear factor NF-kappa-B p100 subunit) @@ -146493,6 +146930,7 @@ AnnotationAssertion(Annotation( "PR:000011178") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "nuclear factor NF-kappa-B p100 subunit") +AnnotationAssertion( ) SubClassOf( ) # Class: (prolactin) @@ -146503,6 +146941,7 @@ AnnotationAssertion( "PR:000013246") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "prolactin") +AnnotationAssertion( ) SubClassOf( ) # Class: (renin) @@ -146515,6 +146954,7 @@ AnnotationAssertion( "PR:000013883") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "renin") +AnnotationAssertion( ) SubClassOf( ) # Class: (sonic hedgehog protein) @@ -146529,6 +146969,7 @@ AnnotationAssertion(Annotation( "PR:000014841") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "sonic hedgehog protein") +AnnotationAssertion( ) SubClassOf( ) # Class: (spondin-1) @@ -146543,6 +146984,7 @@ AnnotationAssertion(Annotation( "PR:000015557") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "spondin-1") +AnnotationAssertion( ) SubClassOf( ) # Class: (SCO-spondin) @@ -146555,6 +146997,7 @@ AnnotationAssertion(Annotation( "PR:000015658") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "SCO-spondin") +AnnotationAssertion( ) SubClassOf( ) # Class: (T-cell acute lymphocytic leukemia protein 1) @@ -146573,6 +147016,7 @@ AnnotationAssertion(Annotation( "PR:000016043") AnnotationAssertion(rdfs:comment "Category=gene. Requested by=CL.") AnnotationAssertion(rdfs:label "T-cell acute lymphocytic leukemia protein 1") +AnnotationAssertion( ) SubClassOf( ) # Class: (thyroglobulin) @@ -146585,6 +147029,7 @@ AnnotationAssertion(Annotation( "PR:000016283") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "thyroglobulin") +AnnotationAssertion( ) SubClassOf( ) # Class: (amino acid chain) @@ -146797,6 +147242,7 @@ AnnotationAssertion( "PR:000027222") AnnotationAssertion(rdfs:comment "Category=gene.") AnnotationAssertion(rdfs:label "CALCA gene translation product") +AnnotationAssertion( ) SubClassOf( ) # Class: (CALCA gene translation product (mouse)) @@ -150735,4 +151181,98 @@ DLSafeRule(Body(ObjectPropertyAtom( V DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) DLSafeRule(Body(ObjectPropertyAtom( Variable() Variable()) ObjectPropertyAtom( Variable() Variable()))Head(ObjectPropertyAtom( Variable() Variable()))) +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Nicole Vasilevsky") +AnnotationAssertion(Annotation( ) "German-Moroccan paleontologist and anatomist") +AnnotationAssertion(Annotation( ) rdfs:label "Nizar Ibrahim") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Mark Engelstad") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Shawn Zheng Kai Tan") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "David P Hill") +AnnotationAssertion(Annotation( ) "researcher ORCID ID = 0000-0001-7920-5321") +AnnotationAssertion(Annotation( ) rdfs:label "Sarah Whitcher Kansa") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "T Alexander Dececchi") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Raymund Stefancsik") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Hilmar Lapp") +AnnotationAssertion(Annotation( ) "American epidemiologist and ontologist") +AnnotationAssertion(Annotation( ) rdfs:label "Melissa Haendel") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "William D Duncan") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Bonita R Lam") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Alexander D Diehl") +AnnotationAssertion(Annotation( ) "researcher (ORCID 0000-0002-0819-0473)") +AnnotationAssertion(Annotation( ) rdfs:label "Paula Duek Roggli") +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-0956-8634") +AnnotationAssertion(Annotation( ) rdfs:label "Terry Hayamizu") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Stephen D Van Hooser") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Robert Druzinsky") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Alan Ruttenberg") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "James Malone") +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-1773-2692") +AnnotationAssertion(Annotation( ) rdfs:label "B Varner") +AnnotationAssertion(Annotation( ) "herpetologist") +AnnotationAssertion(Annotation( ) rdfs:label "David C. Blackburn") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Georgios V. Gkoutos") +AnnotationAssertion(Annotation( ) "researcher, ORCID id # 0000-0002-2244-7917") +AnnotationAssertion(Annotation( ) rdfs:label "Ceri E Van Slyke") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Paola Roncaglia") +AnnotationAssertion(Annotation( ) "data scientist") +AnnotationAssertion(Annotation( ) rdfs:label "Anne Thessen") +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-3734-1859") +AnnotationAssertion(Annotation( ) rdfs:label "Carlo Tornial") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Paul N. Schofield") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Laura M Jackson") +AnnotationAssertion(Annotation( ) "researcher ORCID ID = 0000-0002-6095-8718") +AnnotationAssertion(Annotation( ) rdfs:label "Damien Goutte-Gattat") +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-6443-9376") +AnnotationAssertion(Annotation( ) rdfs:label "Jennifer R. Smith") +AnnotationAssertion(Annotation( ) "Researcher ORCID = 0000-0002-6490-7723") +AnnotationAssertion(Annotation( ) rdfs:label "Anna V. Anagnostopoulos") +AnnotationAssertion(Annotation( ) "bioinformatics researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Christopher J. Mungall") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "David Osumi-Sutherland") +AnnotationAssertion(Annotation( ) "Independent Consultant Semantic Technologies") +AnnotationAssertion(Annotation( ) rdfs:label "Nicolas Matentzoglu") +AnnotationAssertion(Annotation( ) "San Diego researcher with interests in neuroinformatics") +AnnotationAssertion(Annotation( ) rdfs:label "Maryann E. Martone") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "James P. Balhoff") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Gloria S Pryhuber") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Frederic B Bastian") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Erik Segerdell") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Yvonne Bradford") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Terrence F Meehan") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Maria C Keays") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Shahim Essaid") +AnnotationAssertion(Annotation( ) "ecologist") +AnnotationAssertion(Annotation( ) rdfs:label "Meghan Balk") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Wasila M Dahdul") +AnnotationAssertion(Annotation( ) "researcher") +AnnotationAssertion(Annotation( ) rdfs:label "Anne Niknejad") +AnnotationAssertion(Annotation( ) "researcher on mouse genome informatics") +AnnotationAssertion(Annotation( ) rdfs:label "Cynthia L Smith") ) \ No newline at end of file diff --git a/src/ontology/imports/orcidio_terms.txt b/src/ontology/imports/orcidio_terms.txt new file mode 100644 index 0000000000..e69de29bb2 diff --git a/src/ontology/uberon-edit.obo b/src/ontology/uberon-edit.obo index b152c6e13a..05ba9933b9 100644 --- a/src/ontology/uberon-edit.obo +++ b/src/ontology/uberon-edit.obo @@ -61,6 +61,7 @@ import: http://purl.obolibrary.org/obo/uberon/components/hra_subset.owl import: http://purl.obolibrary.org/obo/uberon/components/in-subset.owl import: http://purl.obolibrary.org/obo/uberon/components/mappings.owl import: http://purl.obolibrary.org/obo/uberon/components/vasculature_class.owl +import: http://purl.obolibrary.org/obo/uberon/components/hra_depiction_3d_images.owl import: http://purl.obolibrary.org/obo/uberon/imports/merged_import.owl import: http://purl.obolibrary.org/obo/uberon/patterns/definitions.owl ontology: uberon/core @@ -2107,7 +2108,7 @@ xref: SCTID:25087005 xref: UMLS:C1518256 {source="ncithesaurus:Nervous_System_Part"} intersection_of: UBERON:0000481 ! multi-tissue structure intersection_of: part_of UBERON:0001016 ! nervous system -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel creation_date: 2009-06-18T09:00:04Z [Term] @@ -2142,7 +2143,7 @@ xref: Wikipedia:Glomerulus xref: ZFA:0001288 is_a: UBERON:0000064 ! organ part disjoint_from: UBERON:0001047 ! neural glomerulus -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel relationship: develops_from UBERON:0005749 ! glomerular tuft relationship: part_of UBERON:0001229 {source="FMA", source="MA"} ! renal corpuscle relationship: surrounded_by UBERON:0001230 ! glomerular capsule @@ -4285,10 +4286,10 @@ xref: UMLS:C0230976 {source="ncithesaurus:Amniotic_Cavity"} xref: VHOG:0000855 xref: Wikipedia:Amniotic_cavity is_a: UBERON:0000464 ! anatomical space -relationship: location_of UBERON:0000173 ! amniotic fluid relationship: develops_from UBERON:0000087 {source="EHDAA2"} ! inner cell mass relationship: develops_from UBERON:0009742 {source="cjm"} ! proamniotic cavity relationship: has_quality PATO:0000608 ! closed +relationship: location_of UBERON:0000173 ! amniotic fluid relationship: part_of UBERON:0016887 ! entire extraembryonic component relationship: surrounded_by UBERON:0005971 {source="cjm"} ! amniotic fold property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/5/55/Gray31.png" xsd:anyURI @@ -9396,9 +9397,7 @@ xref: Wikipedia:Neck is_a: UBERON:0000475 ! organism subdivision relationship: anteriorly_connected_to UBERON:0000033 ! head relationship: dubious_for_taxon NCBITaxon:32443 {source="ISBN:9780674021839"} ! Teleostei -relationship: only_in_taxon NCBITaxon:8287 ! Sarcopterygii relationship: part_of UBERON:0000153 ! anterior region of body -relationship: part_of UBERON:0007811 ! craniocervical region relationship: posteriorly_connected_to UBERON:0002100 ! trunk property_value: curator_notes "true necks are considered to be present when the pectoral girdle is separate from the skull - Tiktaalik is the earliest known fish to have a true neck." xsd:string property_value: depicted_by "https://upload.wikimedia.org/wikipedia/commons/9/99/Female_neck.jpg" xsd:anyURI @@ -12314,8 +12313,8 @@ xref: ZFA:0001655 is_a: UBERON:0002323 {source="MA"} ! coelemic cavity lumen intersection_of: UBERON:0002553 ! anatomical cavity intersection_of: luminal_space_of UBERON:0002406 ! pericardial sac -relationship: location_of UBERON:0002409 ! pericardial fluid relationship: develops_from UBERON:0003887 {source="Wikipedia"} ! intraembryonic coelom +relationship: location_of UBERON:0002409 ! pericardial fluid relationship: part_of UBERON:0002406 {source="FMA"} ! pericardial sac relationship: present_in_taxon NCBITaxon:7718 {source="PMID:20959416"} ! Ciona relationship: surrounded_by UBERON:0002357 ! serous pericardium @@ -73142,8 +73141,8 @@ id: UBERON:0003532 name: hindlimb skin def: "A zone of skin that is part of a hindlimb [Automatically generated definition]." [OBOL:automatic] synonym: "hind limb skin" EXACT [OBOL:automatic] -synonym: "lower limb skin" EXACT [FMA:23102] synonym: "lower limb skin" EXACT [https://orcid.org/0000-0002-0819-0473] +synonym: "lower limb skin" EXACT [FMA:23102] synonym: "skin of hind limb" EXACT [OBOL:automatic] synonym: "skin of hindlimb" EXACT [OBOL:automatic] synonym: "skin of lower extremity" EXACT [OBOL:automatic] @@ -90911,6 +90910,7 @@ xref: Wikipedia:Jugular_vein is_a: UBERON:0001638 ! vein relationship: drains UBERON:0000033 ! head relationship: part_of UBERON:0000974 {gci_filler="NCBITaxon:40674", gci_relation="in_taxon"} ! neck +relationship: part_of UBERON:0000974 {gci_filler="NCBITaxon:8287", gci_relation="in_taxon"} ! neck property_value: depicted_by "http://upload.wikimedia.org/wikipedia/commons/f/f8/Gray558.png" xsd:anyURI [Term] @@ -91361,7 +91361,7 @@ xref: Wikipedia:Neuromere xref: ZFA:0001328 intersection_of: UBERON:0004732 ! segmental subdivision of nervous system intersection_of: part_of UBERON:0001049 ! neural tube -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: editor_note "We take the definition of neuromere from Puelles et al, although the existence of mesomeres and prosomeres may not be widely accepted" xsd:string property_value: external_definition "A metameric segment of the central nervous system.[ZFA]" xsd:string {date_retrieved="2012-08-14", external_class="TAO:0001328", ontology="TAO", source="ZFIN:curator"} creation_date: 2009-06-18T09:00:04Z @@ -101743,6 +101743,7 @@ property_value: structure_notes "The sinus, before entering the auricle, is cons [Term] id: UBERON:0005439 name: definitive endoderm +def: "An embryonic structure that is the internal layer of the embryonic gut, formed by the recruitment of epiblast cells through the primitive streak." [PMID:27534536] subset: efo_slim synonym: "embryonic endoderm" EXACT [FMA:85519] xref: EFO:0002574 @@ -128283,13 +128284,11 @@ relationship: part_of UBERON:0002299 ! alveolus of lung [Term] id: UBERON:0008874 name: pulmonary acinus -def: "The part of the airway consisting of a respiratory bronchiole and all of its branches." [MP:0010911, Wikipedia:Acinus#The_Lungs] +def: "The largest lung subunit in which all airways participate in gas exchange, and it is composed of the parenchyma of the respiratory bronchioles, alveolar ducts, and alveoli." [MP:0010911, PMID:2014492, PMID:3382030, Wikipedia:Acinus#The_Lungs] subset: pheno_slim synonym: "acinus pulmonaris" EXACT LATIN [FMA:7313, FMA:TA] synonym: "arbor alveolaris" EXACT LATIN [FMA:7313, FMA:TA] -synonym: "lobulus pulmonis primarius" EXACT LATIN [FMA:7313, FMA:TA] -synonym: "primary pulmonary lobule" EXACT [FMA:7313] -synonym: "respiratory lobule" EXACT [] +synonym: "pulmonary acini" EXACT PLURAL [PMID:37025383] xref: EMAPA:37941 {source="MA:th"} xref: FMA:7313 xref: NCIT:C33426 @@ -128298,6 +128297,7 @@ xref: UMLS:C0225696 {source="ncithesaurus:Pulmonary_Acinus"} xref: Wikipedia:Acinus#The_Lungs is_a: UBERON:0001062 ! anatomical entity relationship: connected_to UBERON:0002187 ! terminal bronchiole +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0010369 ! secondary pulmonary lobule [Term] @@ -138777,8 +138777,10 @@ id: UBERON:0010369 name: secondary pulmonary lobule def: "A unit of lung supplied by three to five terminal bronchioles and contained by fibrous septa." [PMID:3259815] synonym: "lobulus pulmonis secondarius" EXACT LATIN [FMA:7414, FMA:TA] +synonym: "respiratory lobule" RELATED [PMID:18403324] xref: FMA:7414 is_a: UBERON:0010368 {source="FMA"} ! pulmonary lobule +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 relationship: part_of UBERON:0008946 {source="FMA"} ! lung parenchyma property_value: external_definition "a pyramidal mass of lung tissue with sides that are bounded by the incomplete interlobular connective tissue septa and with a base, which is 1-2 cm in diameter, which usually faces the pleural surface of the lung; lobules that occupy a more central position in the lung are not well defined and are considered to consist of three to five pulmonary acini with proximate terminal bronchioles." xsd:string {source="http://medical-dictionary.thefreedictionary.com/secondary+pulmonary+lobule"} @@ -140926,7 +140928,7 @@ xref: EMAPA:37858 {source="MA:th"} xref: FMA:7182 xref: VSAO:0000214 is_a: UBERON:0000475 ! organism subdivision -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel relationship: functionally_related_to GO:0040011 ! locomotion relationship: in_lateral_side_of UBERON:0000468 ! multicellular organism relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata @@ -158902,7 +158904,7 @@ synonym: "piriform cortex layer II" RELATED [NLXANAT:091006] xref: DHBA:11336 xref: NLXANAT:091006 is_a: UBERON:0022303 ! nervous system cell part layer -relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 +relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 ! Maryann E. Martone relationship: has_part GO:0043025 ! neuronal cell body relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex @@ -158915,7 +158917,7 @@ synonym: "layer 3 of piriform cortex" RELATED [NLXANAT:091009] synonym: "piriform cortex layer 3" EXACT [NLXANAT:091009] xref: NLXANAT:091009 is_a: UBERON:0022303 ! nervous system cell part layer -relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 +relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 ! Maryann E. Martone relationship: has_part CL:0000598 ! pyramidal neuron relationship: part_of UBERON:0004725 {source="NIFSTD"} ! piriform cortex @@ -158936,7 +158938,7 @@ xref: neuronames:2276 xref: NLXANAT:091033 xref: OldNeuroNames:2276 {source="NLXANAT:091033"} is_a: UBERON:0000125 ! neural nucleus -relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 +relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 ! Maryann E. Martone relationship: part_of UBERON:0002023 {source="NIFSTD"} ! claustrum of brain [Term] @@ -158974,7 +158976,7 @@ xref: neuronames:1349 xref: NLXANAT:200905010 xref: Wikipedia:Extrastriate_cortex is_a: UBERON:0010009 {source="NIFSTD"} ! aggregate regional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 +relationship: dc-contributor https://orcid.org/0000-0002-8406-3871 ! Maryann E. Martone relationship: part_of UBERON:0000411 {source="WP"} ! visual cortex [Term] @@ -182200,7 +182202,7 @@ synonym: "pain receptor" RELATED [https://meshb.nlm.nih.gov/record/ui?ui=D009619 xref: MESH:D009619 intersection_of: UBERON:0012451 ! sensory receptor intersection_of: capable_of GO:0050966 ! detection of mechanical stimulus involved in sensory perception of pain -relationship: part_of CL:0000198 +relationship: part_of CL:0000198 ! pain receptor cell [Term] id: UBERON:0035018 @@ -190351,7 +190353,7 @@ def: "A collection of hairs that grows on the snout." [https://github.com/obophe subset: phenotype_rcn intersection_of: UBERON:0010165 ! collection of hair on face intersection_of: part_of UBERON:0006333 ! snout -relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 +relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 ! Erik Segerdell creation_date: 2012-02-05T05:21:29Z [Term] @@ -190369,7 +190371,7 @@ xref: SCTID:361703006 xref: UMLS:C0222084 {source="ncithesaurus:Skin_of_the_Face"} intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001456 ! face -relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 +relationship: dc-contributor https://orcid.org/0000-0002-9611-1279 ! Erik Segerdell creation_date: 2012-02-05T05:23:01Z [Term] @@ -190430,7 +190432,7 @@ name: scapular blade def: "Enlarged and broad extension of the scapula distal to the glenoid region that conforms to the contour of the ribs. Origin for the major shoulder muscles including the deltoid group." [PHENOSCAPE] comment: In non-tetrapod sarcopterygians the role of the scapula blade is filled by the enlarge cleithrum. is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -190473,14 +190475,14 @@ comment: Placeholder definition, fix me. is_a: UBERON:2000508 ! pelvic fin radial bone intersection_of: UBERON:1600008 ! pelvic fin distal radial element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel [Term] id: UBERON:1500009 name: pelvic fin basipterygial radial def: "Pelvic fin radial that is an endochondral fused radials or pterygiophores at the base of the pelvic fin." [http://www.briancoad.com/dictionary/complete%20dictionary.htm] is_a: UBERON:2000508 ! pelvic fin radial bone -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel [Term] id: UBERON:1500010 @@ -190488,7 +190490,7 @@ name: pelvic fin middle radial bone def: "Pelvic fin radial in the middle of the pelvic fin." [PHENOSCAPE] comment: placeholder def, fix me. is_a: UBERON:2000508 ! pelvic fin radial bone -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel [Term] id: UBERON:1600006 @@ -205287,7 +205289,7 @@ def: "Fibrous joint connecting the parietal bones." [ZFA:ZDB-PUB-060323-12] synonym: "sagittal suture" RELATED [TAO:0005245] xref: ZFA:0005607 is_a: UBERON:0002209 ! fibrous joint -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-02-10T04:18:40Z @@ -205392,7 +205394,7 @@ is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0011606 ! hyomandibular bone intersection_of: connects UBERON:2000250 ! opercle -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T06:34:33Z @@ -205402,7 +205404,7 @@ name: pterotic fossa def: "Fossa on the pterotic where the hyomandibula articulates." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005630 is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T06:50:18Z @@ -205424,7 +205426,7 @@ is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:2000289 ! preopercle horizontal limb intersection_of: connects UBERON:2000692 ! symplectic -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:25:19Z @@ -205434,7 +205436,7 @@ name: hypophyseal fenestra def: "Space enclosed by the trabeculae cranii. The anterior tip of the notochord extends into the posterior region of the hypophyseal fenestra." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005625 is_a: UBERON:0005744 ! bone foramen -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:33:26Z @@ -205473,7 +205475,7 @@ name: hyomandibular foramen def: "Foramen in the hyomandibula that allows passage of the anterior lateral line nerve and the facial nerve (cranial nerve VII)." [ZFIN:ZDB-PUB-961014-192] xref: ZFA:0005629 is_a: UBERON:0005744 ! bone foramen -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel relationship: part_of UBERON:0011608 ! hyomandibular element property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:39:00Z @@ -205494,7 +205496,7 @@ is_a: UBERON:0000982 ! skeletal joint intersection_of: UBERON:0000982 ! skeletal joint intersection_of: connects UBERON:0011606 ! hyomandibular bone intersection_of: connects UBERON:2000336 ! preopercle vertical limb -relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 +relationship: dc-contributor https://orcid.org/0000-0001-9114-8737 ! Melissa Haendel property_value: provenance_notes "This class was sourced from an external ontology (teleost_anatomy). Its definitions, naming conventions and relationships may need to be checked for compatibility with uberon" xsd:string {source="http://purl.obolibrary.org/obo/tao.owl"} creation_date: 2012-04-09T07:41:34Z @@ -214261,7 +214263,7 @@ name: articular surface def: "Anatomical surface that is part of a skeletal element and articulates with another skeletal element." [PHENOSCAPE:NI] comment: Not necessarily part of a joint. is_a: UBERON:0006984 ! anatomical surface -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0004765 ! skeletal element [Term] @@ -214269,7 +214271,7 @@ id: UBERON:4100004 name: ischial peduncle def: "Bony projection (peduncle) that is located on the posterior portion of the ilium, posterior to the acetabulum." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0001274 ! ischium [Term] @@ -214286,7 +214288,7 @@ def: "Posterior projection of the interclavicle that extends betwen and sometime synonym: "posterior stalk of intercalvicle" EXACT [] synonym: "posterior stem of interclavicle" EXACT [] is_a: UBERON:0011655 ! interclavicle -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100007 @@ -214294,7 +214296,7 @@ name: pectoral articular facet def: "Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Facet of scapulocoracoid with which the pectoral fin radial(s) articulates. Based on Goujet and Young (1995)." [PHENOSCAPE:pm] comment: Should be part of some joint. is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -214312,7 +214314,7 @@ name: pedal digit 7 phalanx def: "Phalanx of the 7th pedal digit." [PHENOSCAPE:AD] intersection_of: UBERON:0003221 ! phalanx intersection_of: part_of UBERON:0012137 ! pedal digit 7 -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100010 @@ -214320,7 +214322,7 @@ name: post-glenoid process def: "Distinct notch ventral to the glenoid." [PHENOSCAPE:NI] comment: Fix def'n is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -214328,7 +214330,7 @@ id: UBERON:4100011 name: postacetabular buttress def: "A bony process at the distal margin of the acetabulum formed by the ischium and/or the ischial peduncle of the ilium." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0001269 ! acetabular part of hip bone [Term] @@ -214336,7 +214338,7 @@ id: UBERON:4100012 name: postacetabular zone def: "Region of the ilium posterior and dorsal to the acetabulum." [PHENOSCAPE:AD] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0001273 ! ilium [Term] @@ -214344,7 +214346,7 @@ id: UBERON:4100013 name: postcoracoid def: "The posterior of the two coracoid elements found in basal tetrapods. Corresponds directly to the 'coracoid' of synapsids." [PHENOSCAPE:AD] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0001421 ! pectoral girdle region [Term] @@ -214352,7 +214354,7 @@ id: UBERON:4100014 name: posterior dorsal fin def: "Dorsal fin located posterior to the anterior dorsal fin." [PHENOSCAPE:WD] is_a: UBERON:0003097 ! dorsal fin -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100015 @@ -214366,7 +214368,7 @@ name: posterior process of ilium def: "A posteriorly directed bony projection from the ilium that is the attachment site of the iliofibularis muscle (see Sumida, 1997)." [PHENOSCAPE:AD] synonym: "posterior iliac process" RELATED [] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0001273 ! ilium [Term] @@ -214375,7 +214377,7 @@ name: parasphenoid flange def: "Lateral expansion of the parasphenoid." [PHENOSCAPE:BC] synonym: "parasphenoid wing" BROAD [] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0004745 ! parasphenoid [Term] @@ -214395,7 +214397,7 @@ name: radial facet def: "Facet to accommodate the radius on the distal end of the humerus." [PHENOSCAPE:NI] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4300038 ! facet -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0000976 ! humerus [Term] @@ -214403,14 +214405,14 @@ id: UBERON:4100113 name: dermal intracranial joint def: "Hinge in the skull skeleton to allow for kinetic movement of different parts." [PHENOSCAPE:NI] is_a: UBERON:0000982 ! skeletal joint -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100114 name: anterior distal condyle of femur def: "Anatomical projection in the distal region of the femur." [PHENOSCAPE:NI] is_a: UBERON:0009979 ! condyle -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0000981 ! femur [Term] @@ -214418,7 +214420,7 @@ id: UBERON:4100115 name: spiracular notch def: "Soft tissue notch/opening lying on a spiracle." [PHENOSCAPE:NI] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0004704 ! bone fossa [Term] @@ -214426,7 +214428,7 @@ id: UBERON:4100116 name: posterior distal condyle of femur def: "Anatomical projection in the posterior/distal region of the femur." [PHENOSCAPE:NI] is_a: UBERON:0009979 ! condyle -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0000981 ! femur [Term] @@ -214434,14 +214436,14 @@ id: UBERON:4100117 name: presacral rib def: "Rib located anterior to the sacral region." [PHENOSCAPE:NI] is_a: UBERON:0002228 ! rib -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100118 name: trunk rib def: "Rib located in the trunk (ribcage) area (i.e. excluding cervical and caudal axial series." [PHENOSCAPE:NI] is_a: UBERON:0002228 ! rib -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim [Term] id: UBERON:4100119 @@ -214449,7 +214451,7 @@ name: extratemporal bone def: "Extratemporal bone: Skull bone in the posterior half of the cranium, bordering the squamosal and opercular." [PHENOSCAPE:NI] synonym: "postspiracular" EXACT [] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: part_of UBERON:0003113 ! dermatocranium [Term] @@ -214474,7 +214476,7 @@ id: UBERON:4200000 name: medial blade of ilium def: "The medial surface of the iliac blade. Origin site of the iliofemoralis internus muscle and its homologues." [PHENOSCAPE:ad] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0010746 ! iliac blade [Term] @@ -214483,7 +214485,7 @@ name: postpubis def: "The region of the pubis posterior to the acetabulum." [PHENOSCAPE] comment: In some non-avian reptile this terminology refers to a distinct rear facing process of the pubis. In avians and some closely related theropod taxa this term is used to denote the pubis itself which has been rotated to face backwards. is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001275 ! pubis [Term] @@ -214491,7 +214493,7 @@ id: UBERON:4200002 name: coracoid plate def: "Broad, convex expansion of the coracoid bone below the level of the glenoid. Based on Romer 1956." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004743 ! coracoid bone [Term] @@ -214500,14 +214502,14 @@ name: archipterygial fin def: "A type of pectoral fin in which the endoskeletal elements have a main axis that runs through the center of the fin. This creates a bilaterally symmetrical fin. (Modified from Kardong 2012)." [PHENOSCAPE] comment: Is homologous to the tetrapod limb. is_a: UBERON:0000151 ! pectoral fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200004 name: intertrochanteric fossa def: "Depression on the ventreal side of the femoral head. Associated with the pubioischiofemoralis externus muscle." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -214524,7 +214526,7 @@ comment: Can exist in taxa without a cleithrum. is_a: UBERON:0000064 ! organ part is_a: UBERON:0004529 ! anatomical projection relationship: adjacent_to UBERON:0006657 ! glenoid fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -214541,7 +214543,7 @@ def: "Joint that articulates left and right clavicles." [PHENOSCAPE] synonym: "interclavicle joint" EXACT [] xref: PHENOSCAPE:wd is_a: UBERON:0008114 ! joint of girdle -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001105 ! clavicle bone [Term] @@ -214550,7 +214552,7 @@ name: hypochordal lepidotrichium def: "Caudal fin lepidotrichium located ventral to the notochord." [PHENOSCAPE] xref: PHENOSCAPE:wd is_a: UBERON:4000174 ! caudal fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200010 @@ -214559,7 +214561,7 @@ def: "A distinct bony ridge on ventralsurface of the humeral shaft that correspo synonym: "pectoral process" RELATED [] xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] @@ -214570,7 +214572,7 @@ synonym: "navicular bone of pes" BROAD [] xref: PHENOSCAPE:AD is_a: UBERON:0001447 ! tarsal bone is_a: UBERON:0012131 ! centrale -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200012 @@ -214578,7 +214580,7 @@ name: ectepicondylar flange def: "Flange present of the distal region of the humerus, associated with extensor musculature of forelimb." [PHENOSCAPE] xref: PHENOSCAPE:ni is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus relationship: part_of UBERON:0006807 ! ectepicondyle of humerus @@ -214588,7 +214590,7 @@ name: flexor surface def: "Surface of a long bone that possess the flexor muscle attachment sites." [PHENOSCAPE] xref: PHENOSCAPE:ni is_a: UBERON:0006984 ! anatomical surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002495 ! long bone [Term] @@ -214596,7 +214598,7 @@ id: UBERON:4200014 name: lateral tuber of ulna def: "Projection on the lateral side of proximal part of the ulna." [PHENOSCAPE:NI] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001424 ! ulna [Term] @@ -214606,7 +214608,7 @@ def: "The medial most digits of the pes." [PHENOSCAPE] comment: In most tetrapods this corresponds to digits II-IV, but the exact identiy of digits in this region varies taxonomically based on digit numbering. xref: PHENOSCAPE:ad is_a: UBERON:0005445 ! segment of pes -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0012142 ! pedal digitopodium region [Term] @@ -214615,7 +214617,7 @@ name: postbranchial lamina def: "Medial facing projection or surface on the anterior ( cranial) region of the cleithrum that is often textured or denticled. This process has two primary functions: 1) its shape enhances the vertical strength of the cleithrum and 2) it forms the edge of the gill chamber and helps to direct water after it has passed over the gills (modified from Clack 2012)." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -214632,7 +214634,7 @@ def: "An enlargement of the distal region of the calcaneum that corresponds to t xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -214641,7 +214643,7 @@ name: preacetabular process def: "Process on ilium located anteriorly to acetabulum." [PHENOSCAPE] xref: PHENOSCAPE:ad is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -214650,7 +214652,7 @@ name: suprascapular fossa def: "Fossa on the medial surface on the scapula above the glenoid." [PHENOSCAPE] xref: PHENOSCAPE:ad is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -214659,7 +214661,7 @@ name: astragalus-calcaneum unit def: "Osteological unit consisting of the astragalus and calcaneum." [PHENOSCAPE] xref: PHENOSCAPE:NI is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 +relationship: dc-contributor https://orcid.org/0000-0001-5839-6798 ! Nizar Ibrahim relationship: has_component UBERON:0001450 ! calcaneus relationship: has_component UBERON:0002395 ! talus relationship: part_of UBERON:0009879 ! tarsal skeleton @@ -214671,7 +214673,7 @@ def: "Narrow bone that lies ventral to the level of insertion of the pectoral fi comment: The presence of this bone is a synapomorphy of coelacanth fishes. is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -214679,7 +214681,7 @@ id: UBERON:4200023 name: anterior dorsal fin def: "A dorsal fin located anterior to posterior dorsal fin." [PHENOSCAPE:WD] is_a: UBERON:0003097 ! dorsal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200024 @@ -214693,7 +214695,7 @@ name: ascending process of the astragalus def: "Flattened process of the dorsl surface of the astragalus which contacts the tibia anteriorly." [PHENOSCAPE:NI] xref: PHENOSCAPE:NI is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002395 ! talus [Term] @@ -214701,7 +214703,7 @@ id: UBERON:4200026 name: supraglenoid foramen def: "Foramen that perforates supraglenoid buttress." [PHENOSCAPE] is_a: UBERON:0005744 ! bone foramen -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:4200027 ! supraglenoid buttress [Term] @@ -214710,7 +214712,7 @@ name: supraglenoid buttress def: "A bony projection dorsal to the glenoid articulation on the scapulocoracoid." [PHENOSCAPE] comment: In basal tetrapodomorphs this structure braces the scapula on the cleithrum, but this function is lost in derived tetrapods. is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -214718,7 +214720,7 @@ id: UBERON:4200028 name: adductor blade def: "A prominent ridge in basal tetrapods on the ventral side of the femur that includes the fourth trochater, internal trochanter and the adductor crest (based on Coates, 1996)." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -214726,7 +214728,7 @@ id: UBERON:4200029 name: adductor crest def: "A bony crest on venteral side of femur that is the attachment site for the adductor muscles." [PHENOSCAPE:AD] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur relationship: part_of UBERON:4200028 ! adductor blade @@ -214735,7 +214737,7 @@ id: UBERON:4200030 name: antitrochanter def: "Raised surface at the posterior portion of the acetabulum (see Nesbitt, 2011)." [PHENOSCAPE:NI] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001269 ! acetabular part of hip bone relationship: part_of UBERON:0001273 ! ilium @@ -214745,14 +214747,14 @@ name: caudalipuboischiotibialis def: "Muscle that is associated with tail flexion. Orginates on one of the first post sacral vertebrae posteriorly and inserts on the posterior edge of the m.puboischiotibialis. (modified from Duellman and Trueb 1994)." [PHENOSCAPE] comment: To Do: add attachment site terms to ext is_a: UBERON:0014892 ! skeletal muscle organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200032 name: clavicle blade def: "Expanded and flattened ventral region of clavicle bone." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001105 ! clavicle bone [Term] @@ -214760,7 +214762,7 @@ id: UBERON:4200033 name: cleithrum head def: "Expanded dorsal region of the cleithrum." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004741 ! cleithrum [Term] @@ -214768,7 +214770,7 @@ id: UBERON:4200034 name: cnemial crest def: "Longitudnal bony ridge on tibia, attachment site of the major extensor muscle of the hind limb." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000979 ! tibia [Term] @@ -214776,7 +214778,7 @@ id: UBERON:4200036 name: internal trochanter def: "A boney projection on the internal diaphysis of the femur anterior or medial to the intertrochanteric fossa, below the femoral head. Muscle attachment site for ventral muscle mass notably the puboischiofemoralis externus. Modified from Romer 1956." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -214784,7 +214786,7 @@ id: UBERON:4200037 name: supinator process def: "A bony process that corresponds to the attachment site for the forelimb supinator muscles in tetrapods, distal to the deltopectoral crest and anterior to the radial condyle." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] @@ -214792,7 +214794,7 @@ id: UBERON:4200038 name: subscapular fossa def: "A marked depression on the medial side of the scapula blade, often opposite the glenoid region." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -214801,7 +214803,7 @@ name: supraacetabular buttress def: "A bony protuberance dorsal to the acetabulum on the ilium, confluent with the supraacetabular crest (when present). Acts as a bone brace to prevent excessive femoral abduction and the origin site for part of the M. iliofemoralis." [PHENOSCAPE] synonym: "acetabular buttress" BROAD [] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -214809,7 +214811,7 @@ id: UBERON:4200040 name: acrocoracoid process def: "Anatomical process located in the proximal region of the coracoid in avian theropods, that is hook-shaped." [PHENOSCAPE:NI] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004743 ! coracoid bone [Term] @@ -214817,7 +214819,7 @@ id: UBERON:4200041 name: aponeurosis palmaris def: "The palmar aponeurosis is a fibrotendinous complex that functions as the tendinous extension of the palmaris longus, when present, and as a strong stabilizing structure for the palmar skin of the hand. It has five longitudinal slips that project into the base of each digit and a deeper transverse portion that crosses the palm at the proximal end of the metacarpals bones (from Wikipedia)." [PHENOSCAPE] is_a: UBERON:0006614 ! aponeurosis -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002398 ! manus [Term] @@ -214825,7 +214827,7 @@ id: UBERON:4200042 name: brevis shelf def: "Anatomical projection on the ilium, anchoring caudal muscles." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -214833,7 +214835,7 @@ id: UBERON:4200043 name: brevis fossa def: "Fossa located on the brevis shelf." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium relationship: part_of UBERON:4200042 ! brevis shelf @@ -214842,7 +214844,7 @@ id: UBERON:4200044 name: articular surface for the calcaneum on the astragalus def: "Contact surface between the calcaneum and the astragalus located on the astragalus." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002395 ! talus [Term] @@ -214850,7 +214852,7 @@ id: UBERON:4200045 name: articular surface for the astragalus on the calcaneum def: "Contact surface between the calcaneum and the astragalus located on the calcaneum." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -214859,14 +214861,14 @@ name: astragalo-calcaneal canal def: "The astragalo-calcaneal canal forms a foramen between the articulated astragalus and calcaneum when the canal is ossified (Nesbitt, 2011)." [PHENOSCAPE] intersection_of: UBERON:0004705 ! fenestra intersection_of: part_of UBERON:4200021 ! astragalus-calcaneum unit -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200047 name: attachment site def: "Morphological structure denoting the extent of an attachment site for a soft tissue on a skeletal element." [PHENOSCAPE] is_a: UBERON:0000061 ! anatomical structure -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004765 ! skeletal element [Term] @@ -214884,7 +214886,7 @@ id: UBERON:4200049 name: cartilago sesamoides def: "A sesamoid found in the found in the ligamentum calcanei of a wide variety of frogs. (based on Nussbaum, R. A. 1982." [PHENOSCAPE] is_a: UBERON:0001479 ! sesamoid bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000211 ! ligament [Term] @@ -214892,14 +214894,14 @@ id: UBERON:4200050 name: cotyla def: "A cup shaped articular surface on a bone." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200051 name: cotyloid notch def: "A notch or opening in the ventral part of the acetabular rim." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006802 ! acetabular rim [Term] @@ -214907,7 +214909,7 @@ id: UBERON:4200052 name: crista tibiofibularis def: "Tuberosity on the posterior surface of the lateral femoral condyle." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -214924,7 +214926,7 @@ name: heterocercal tail def: "Type of tail (caudal) fin in which the vertebral column turns upwards into the upper lobe which is longer than the lower. Asymmetrical externally as well as internally." [PHENOSCAPE] comment: Elasmobranchii, Acipenseridae, Polyodontidae and in many larval Teleostomi. May also be used for an asymmetrical caudal fin but with epicercal defining upper lobe longer and hypocercal the lower lobe longer. http://www.briancoad.com/dictionary/DicPics/heterorercal.htm is_a: UBERON:4000164 ! caudal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200055 @@ -214932,7 +214934,7 @@ name: homocercal tail def: "Type of tail fin in which the vertebrae generally turn upward at the hind end of the column, but which is externally symmetrical. The fin rays of the caudal are supported by hypaxial elements." [PHENOSCAPE] comment: Found in most Teleostei. http://www.briancoad.com/dictionary/DicPics/homocercal2.htm is_a: UBERON:4000164 ! caudal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200056 @@ -214940,14 +214942,14 @@ name: hypocercal tail def: "Type of tail fin where the lower lobe is the longer and is supported by the vertebral column. Asymmetrical externally as well as internally." [PHENOSCAPE] comment: found in Pteraspides (fossil). is_a: UBERON:4000164 ! caudal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200060 name: ectepicondylar foramen def: "Formen present on the ectepicondyle of the humerus." [PHENOSCAPE] is_a: UBERON:0004111 ! anatomical conduit -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006807 ! ectepicondyle of humerus [Term] @@ -214956,21 +214958,21 @@ name: epicercal tail def: "Tail fin in which the the caudal part of the notochord tapers posterodorsally. Based on Pradel et al. 2007." [PHENOSCAPE] comment: Osteostracans are the only jawless vertebrates that share with gnathostomes an epicercal tail. is_a: UBERON:4000164 ! caudal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200062 name: epichordal lepidotrichium def: "Caudal fin lepidotrichium located upon or above the notochord." [PHENOSCAPE] is_a: UBERON:4000174 ! caudal fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200063 name: ectocondylar tubercle def: "Posteriorly projecting bony tubercle that is located proximal to the lateral condyle of the femur." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -214978,7 +214980,7 @@ id: UBERON:4200068 name: prepubic element def: "A small plate of cartilage synchondrotically united with the pubis. Modified from Baez and Harrison 2005." [PHENOSCAPE] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001271 ! pelvic girdle region [Term] @@ -214990,7 +214992,7 @@ synonym: "carina" EXACT [] synonym: "carina sterni" EXACT [] synonym: "crista sterni" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000975 ! sternum [Term] @@ -214998,7 +215000,7 @@ id: UBERON:4200070 name: median fin spine def: "Fin spine that is part of a median fin." [PHENOSCAPE] is_a: UBERON:4200075 ! fin spine -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:4000162 ! median fin [Term] @@ -215006,7 +215008,7 @@ id: UBERON:4200075 name: fin spine def: "A spine that is part of some fin." [PHENOSCAPE] is_a: UBERON:4000172 ! lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0008897 ! fin [Term] @@ -215016,7 +215018,7 @@ def: "An opening in the dermal armour of basal gnathostomes that encloses the pe comment: Disjoint from 'pectoral fenestra' of Amphibians (AAO_0000779). synonym: "trunk armour pectoral fenestra" EXACT [] is_a: UBERON:3000755 ! pectoral girdle opening -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200077 @@ -215029,7 +215031,7 @@ id: UBERON:4200078 name: clavicular facet def: "A notch for the articulation of the clavicle on other girdle elements." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -215038,7 +215040,7 @@ name: dorsal iliac process def: "Posteriordorsal process of the ilium." [PHENOSCAPE] comment: It spresences gives the ilium a 'double headed' appearence. is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215046,7 +215048,7 @@ id: UBERON:4200080 name: fibular crest def: "A bony projection on the lateral side of the tibia, allowing contact between the later and the fibula." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001446 ! fibula [Term] @@ -215054,7 +215056,7 @@ id: UBERON:4200081 name: hypocleideum def: "Zone of bone organ located on the flat ventral side of the distal region of the furcula, serving as attachment region for pectoral muscles." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007841 ! furcula [Term] @@ -215063,7 +215065,7 @@ name: postaxial centrale def: "Centrale in the postaxial region of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. is_a: UBERON:0012131 ! centrale -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200084 @@ -215071,7 +215073,7 @@ name: preaxial centrale def: "Centrale in the preaxial side of the mesopodium." [PHENOSCAPE] comment: The paried limbs have a main axis running proximodistally trough the stylopodiam element (humerus/femur). from the zeugopodium distally elements can be divided into preaxial (on the radius/tibia side) and postaxial (ulna/fibula) sides. The exact orientation of these axises vary depending on the orientation of the limb in a neutral position. is_a: UBERON:0012131 ! centrale -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200085 @@ -215086,7 +215088,7 @@ name: iliac neck def: "A constricted region of the ilium which is dorsal to the acetabulular region. Prior to the expansion of the iliac blade." [PHENOSCAPE] synonym: "neck of ilium" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215094,7 +215096,7 @@ id: UBERON:4200087 name: iliac peduncle def: "Bony projection that is part of the dorsal surface of the ischim, where it articulates with the ilium." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001274 ! ischium [Term] @@ -215102,7 +215104,7 @@ id: UBERON:4200088 name: iliac peduncle of the pubis def: "Bony projection that is part of the dorsal surface of the pubis where it meets the ilium." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001275 ! pubis [Term] @@ -215110,7 +215112,7 @@ id: UBERON:4200089 name: fibular facet of the calcaneum def: "Articular surface on calcaneum for the fibula." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -215118,7 +215120,7 @@ id: UBERON:4200090 name: fibular facet of the astragalus def: "Articular surface on the astragalus for the fibula." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002395 ! talus [Term] @@ -215126,7 +215128,7 @@ id: UBERON:4200091 name: ethomosphenoid region def: "Region consisitng of the ethmoid and sphenoid bones." [PHENOSCAPE] is_a: UBERON:0002513 ! endochondral bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001677 ! sphenoid bone relationship: part_of UBERON:0001679 ! ethmoid bone @@ -215135,7 +215137,7 @@ id: UBERON:4200092 name: flexor tubercle of ungual def: "Eminence on the proximo-dorsal surface of the ungual, for attachment of flexor muscles." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:3010209 ! keratinous claw [Term] @@ -215143,7 +215145,7 @@ id: UBERON:4200093 name: guard scale comment: Need definition is_a: UBERON:0002542 ! scale -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200094 @@ -215158,7 +215160,7 @@ id: UBERON:4200095 name: infraspinous process def: "Process on infraspinous (region below the spine) of scapula." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -215178,7 +215180,7 @@ synonym: "trochlear sulcus of femur" EXACT [] synonym: "trochlear surface of femur" EXACT [] is_a: UBERON:0004704 ! bone fossa is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004406 ! distal epiphysis of femur [Term] @@ -215186,14 +215188,14 @@ id: UBERON:4200097 name: intermediate spine def: "Spine ventrally located on the body and not part of the pectoral, pelvic or anal fins." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200098 name: ischial foot def: "Expansion of the distal region of the ischium." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001274 ! ischium [Term] @@ -215201,14 +215203,14 @@ id: UBERON:4200099 name: lateral extrascapular def: "The most lateral of the paired series of extrascapular bones and is the bone where the intersection of the otic, postotic and extrascapular or supratemporal canals occur." [PHENOSCAPE] is_a: UBERON:2000663 ! extrascapula -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200100 name: latissimus dorsi process def: "A bony process on the dorsal side of the proximal region of the humerus which corresponds to the insertion site of the Latissimus dorsi muscle." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] @@ -215216,7 +215218,7 @@ id: UBERON:4200101 name: m.scapulotriceps def: "Muscle that represents one branch of the larger triceps brachii, origination site near the glenoid fossa on the scapula." [PHENOSCAPE] is_a: UBERON:0003662 ! forelimb muscle -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200102 @@ -215224,7 +215226,7 @@ name: median dorsal plate def: "Dermal armour plate that is situated behind the head and constitute the dorsal most portion of the dermal shoulder girdle. Modified from Brazeau 2009, Young 2010." [PHENOSCAPE] comment: Present in some basal gnathostomes. is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -215232,14 +215234,14 @@ id: UBERON:4200103 name: median extrascapular def: "The medial of the the paired series of extrascapular bones which carries the extrascapular or supratemporal canal." [PHENOSCAPE] is_a: UBERON:2000663 ! extrascapula -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200104 name: metacarpal extensor pit def: "Pits located on the proximodorsal part of metacarpals denoting the attachemnt sites for ligaments." [PHENOSCAPE] is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002374 ! metacarpal bone [Term] @@ -215247,7 +215249,7 @@ id: UBERON:4200105 name: nerve foramen def: "Opening and/or passageway for nerve(s) in bone." [PHENOSCAPE] is_a: UBERON:0004111 ! anatomical conduit -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200106 @@ -215256,7 +215258,7 @@ def: "A distinct region on a skeletal element that demarcates the attachment are comment: While this term is applicable to both vertebrates and invertebrates, the qualities used to demarcate muscle attachment areas between the two groups may not be identical. synonym: "muscle insertion site" BROAD [] is_a: UBERON:4200047 ! attachment site -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200107 @@ -215264,7 +215266,7 @@ name: obturator process of ischium def: "Process located on the ventral shaft of the ischium that denotes the attachment site of the pubio-ischio-femoralis externus." [PHENOSCAPE] comment: In birds the pubio-ischio-femoralis externus is sometimes called the M.oburatorius lateralis and medialis. is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001274 ! ischium [Term] @@ -215273,7 +215275,7 @@ name: outer digit of hand def: "The flanking digit of the manus." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the manus is_a: UBERON:0005451 ! segment of manus -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0012140 ! digitopodium region [Term] @@ -215282,7 +215284,7 @@ name: outer digits of pes def: "The flanking digit of the pes." [PHENOSCAPE] comment: In most taxa this is digits I and V, but this varies based on the number of digits in the pes. is_a: UBERON:0005445 ! segment of pes -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0012140 ! digitopodium region [Term] @@ -215290,35 +215292,35 @@ id: UBERON:4200110 name: prepectoral spine def: "Spine located anterior to the pectoral fin." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200111 name: prepelvic fin spine def: "Spine located anterior to the pelvic fin and posterior to the pectoral fin." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200112 name: prepectoral space def: "A triangular, anteroventrally facing area developed between the preaxial margin of the humerus and the proximal limb of the ventral humeral ridge. Based on Callier et al. 2009 ." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200113 name: predorsal scute is_a: UBERON:2002294 ! fish scute -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200114 name: prepubic process def: "Elongate process forming the anteriormost part of the pubis." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001275 ! pubis [Term] @@ -215327,7 +215329,7 @@ name: presupracleithrum def: "An skeletal element of the upper pectoral girdle overlapped by the opercular and posttemporal bones." [PHENOSCAPE] is_a: UBERON:0007829 ! pectoral girdle bone is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200116 @@ -215335,14 +215337,14 @@ name: pteroid def: "Slender bone connected to the carpus in pterosaurs. The bone, which may have pointed forward, supports the propatagium, a membrane located between the carpus and pectoral region." [PHENOSCAPE] comment: This structure is unique to pterosaurs. There is debate wherther this structure is derived from metacarpal I, the carpal bones or is a a novel bone. See Unwin et al. 1996 is_a: UBERON:0008962 ! forelimb bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200117 name: pubic boot def: "Anteroposterior expansion of the distal region of the pubis." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001275 ! pubis [Term] @@ -215350,7 +215352,7 @@ id: UBERON:4200118 name: pubic peduncle def: "Bony projection on the anterior portion of the ilium, anterior to the acetabulum that articulates with the pubis." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215358,7 +215360,7 @@ id: UBERON:4200119 name: pubis-ischium contact def: "Contact zone between the pubis and the ischium." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone [Term] @@ -215366,7 +215368,7 @@ id: UBERON:4200120 name: puboischiadic plate def: "A broad expnase of bone incorperating both the pubis and the ischium. Origin site for ventral limb muscle including the pubioishciofemoralis externus. Modified from Romer 1956 ." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007830 ! pelvic girdle bone/zone [Term] @@ -215387,7 +215389,7 @@ id: UBERON:4200122 name: pubotibialis def: "Originates in on the pubic cartillage and inserts on the tibia, acts to adduct the hindlimb. Modified from De luliis and Pulera." [PHENOSCAPE] is_a: UBERON:0001325 ! muscle of pelvis -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: has_muscle_insertion UBERON:0000979 ! tibia relationship: has_muscle_origin UBERON:0001275 ! pubis @@ -215396,7 +215398,7 @@ id: UBERON:4200123 name: scapular process def: "The dorsal extension of the scapulocoracoid above the level of the glenoid region in basal gnathostomes. Modified from Brazeau 2009." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -215404,7 +215406,7 @@ id: UBERON:4200124 name: sternal trabecula def: "Anatomical projections that are elongate processes in the mid and posterior regions of the sternum." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000975 ! sternum [Term] @@ -215412,7 +215414,7 @@ id: UBERON:4200125 name: supraacetabular crest def: "Anatomical projection (crest) located dorsaly to the acetabulum." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215420,7 +215422,7 @@ id: UBERON:4200126 name: supraacetabular rim def: "Bony rim that is part of the supraacetabular region." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215428,7 +215430,7 @@ id: UBERON:4200127 name: suprascapula foramen def: "The route through which structures pass between the base of the neck and the posterior scapular region. It is formed by the suprascapular notch of the scapula and the superior transverse scapular ligament. From http://medical-dictionary.thefreedictionary.com/suprascapular+foramen." [PHENOSCAPE] is_a: UBERON:0004111 ! anatomical conduit -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0006849 ! scapula [Term] @@ -215448,7 +215450,7 @@ id: UBERON:4200129 name: synarcual region def: "Axial subdivision that includes a series of fused cervical vertebrae or vertebral elements. Based on Jeffrey C. Carrier. Biology of Sharks and Their Relatives, 2012. CRC Press." [PHENOSCAPE] is_a: UBERON:0011676 ! subdivision of organism along main body axis -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000974 ! neck [Term] @@ -215456,7 +215458,7 @@ id: UBERON:4200130 name: tibial facet of astragalus def: "Facet for the articulation of the tibia on the astragalus (talus)." [PHENOSCAPE] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002395 ! talus [Term] @@ -215465,7 +215467,7 @@ name: trochanteric shelf def: "Anatomical projection on the anterolateral region of the proximal end of the femur." [PHENOSCAPE] comment: In Archosaurs was originally a possible insertion site for the m. iliofemoralis externus (Hutchinson 2001). In more derived dinosaurs this becomes a distinct process possibly providing the attachment surface for mm. iliotrochanteri in addition to m. iliofemoralis externus (Carrano and Hutchinson 2002) is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000981 ! femur [Term] @@ -215481,14 +215483,14 @@ id: UBERON:4200133 name: crest def: "A ridge or similar projection rising above the surface of an anatomical structure." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200134 name: antimere def: "A part in the body of an organism that corresponds to an opposite symmetrical part." [PHENOSCAPE] is_a: UBERON:0000475 ! organism subdivision -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200135 @@ -215496,7 +215498,7 @@ name: puboischiadic bar def: "A transverse flattened or cylindrical plate in the posterior body wall opposite the anterior ends of the pelvic fins, in front of the vent and at the posterior end of the body cavity, that supports a few anterior pelvic radials and a basal cartilage, the basipterygium. from Leonard J. V. Compagno. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2." [PHENOSCAPE] comment: Potentially homologous to the pelvic girdle. is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -215505,7 +215507,7 @@ name: triphycercal tail def: "A caudal fin with three lobes." [PHENOSCAPE] comment: Found in coelacanths is_a: UBERON:4000164 ! caudal fin -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200139 @@ -215513,7 +215515,7 @@ name: palatoquadrate element def: "Endochondral element that is part of the suspensorium sometimes ossifying distally as the quadrate bone and linking the basal section of the braincase to the lower jaw." [PHENOSCAPE] comment: The palatoquadrate cartilage is the primary element of the suspensorium in larval amphibians and can ossify distally in some taxa, becoming the quadrate bone. In mammals the quadrate bone becomes the incus. is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 +relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 ! David C. Blackburn relationship: part_of UBERON:0003108 ! suspensorium [Term] @@ -215528,7 +215530,7 @@ id: UBERON:4200141 name: prehallical element def: "Is a endochondral element that is part of the mesopodial skeleton and is contained within the prehallux which in some taxa appears as a pre-axial digit-like projection anterior to the first digit of the foot." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 +relationship: dc-contributor https://orcid.org/0000-0002-1810-9886 ! David C. Blackburn relationship: part_of UBERON:3000922 ! prehallux skeleton [Term] @@ -215536,14 +215538,14 @@ id: UBERON:4200150 name: accessory foramen def: "Foramen found on the humerus of tetrapodomorphs beyond the entepicondyle and ectepicondyle foramen. Often denoted as foramen 'c' and 'd' after Jarvik 1996." [PHENOSCAPE] is_a: UBERON:0004111 ! anatomical conduit -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] id: UBERON:4200151 name: toe disc is_a: UBERON:3000981 ! limb external integument structure -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002544 ! digit [Term] @@ -215552,7 +215554,7 @@ name: intertarsale sesamoid def: "Sesamoid bone in the tarsal region." [PHENOSCAPE] synonym: "os sesamoides tarsale" BROAD [] is_a: UBERON:0001479 ! sesamoid bone -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0004454 ! tarsal region [Term] @@ -215807,7 +215809,7 @@ name: zygosphene def: "An articular process on anterior surface of neural arch of vertebrae which fits into zygantrum. Modified from Henderson's dictionary of Biological terms 12th Edition." [PHENOSCAPE] comment: Found in snakes and some lizards. is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0003861 ! neural arch [Term] @@ -215821,7 +215823,7 @@ name: ulnar facet of the humerus synonym: "ulnar facet" BROAD [] is_a: UBERON:4200214 ! epipodial facet is_a: UBERON:4300038 ! facet -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] @@ -215829,7 +215831,7 @@ id: UBERON:4200193 name: posterodorsal process of ilium def: "Anatomical project part of the blade of the ilium that projects posteriorly." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001273 ! ilium [Term] @@ -215851,14 +215853,14 @@ id: UBERON:4200196 name: atlas intercentrum def: "The intercentrum unit of the atlas vertebra." [PHENOSCAPE] is_a: UBERON:4200194 ! intercentrum -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi [Term] id: UBERON:4200197 name: anterior humeral ridge def: "Ridge or keel at the proximal end of the humerus. (see Laurin 1998)." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0000976 ! humerus [Term] @@ -215866,7 +215868,7 @@ id: UBERON:4200198 name: incisor process def: "Process that is part of the mandible that is in close proximity to the incisor teeth." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0001684 ! mandible [Term] @@ -215875,7 +215877,7 @@ name: sallet sensory system def: "Ciliary restraint system in the inner ear that uses sallets instead of the tectorial membrane." [PHENOSCAPE] synonym: "sallet restraint system" EXACT [] is_a: UBERON:0011216 ! organ system subdivision -relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 +relationship: dc-contributor https://orcid.org/0000-0001-7972-3866 ! T Alexander Dececchi relationship: part_of UBERON:0002105 ! vestibulo-auditory system [Term] @@ -216191,7 +216193,7 @@ id: UBERON:4300002 name: palatine prong def: "A process on the palatine that projects outward and upward and articulates with a depression (maxillary saddle) in the proximal end of the maxilla [Gosline WA et al, 1966; Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -216200,7 +216202,7 @@ name: urodermal bone def: "Paired, thin dermal bones at the rear of the caudal fin skeleton, derived from scales." [PHENOSCAPE] xref: http://www.briancoad.com/Dictionary/R-Z\,%20Abbreviations\,%20Symbols%20and%20References.htm is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000167 ! caudal fin skeleton [Term] @@ -216208,7 +216210,7 @@ id: UBERON:4300004 name: scale pocket def: "A continuous flap of skin with scales implanted in pockets or invaginations [Baldwin, CC and Johnson GD. 1996. Interrelationships of Aulopiformes. Pages 355-404 in MLJ Stiassny, LR Parenti, and DG Johnson, (eds.), Interrelationships of fishes. Academic Press, San Diego, CA.]." [PHENOSCAPE] is_a: UBERON:2001951 ! skin flap -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: has_part UBERON:0002542 ! scale [Term] @@ -216217,7 +216219,7 @@ name: aphakic space def: "The space in the pupil, which is not occupied by the lens. A rostral aphakic space may enhance the forward binocular field of vision." [PHENOSCAPE] xref: http://www.briancoad.com/Dictionary/Introduction%20and%20A-F.htm is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000970 ! eye [Term] @@ -216225,7 +216227,7 @@ id: UBERON:4300006 name: scale row def: "A series of scales in alignment with each other along some axis of the body." [PHENOSCAPE:BF] is_a: UBERON:0000477 ! anatomical cluster -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: has_part UBERON:0002542 ! scale [Term] @@ -216233,7 +216235,7 @@ id: UBERON:4300007 name: medial pelvic process def: "Process that is posteriorly oriented and medially located on the basipterygium. It is a paired projection. [PHENOSCAPE:bf]." [http://hdl.handle.net/10088/11710] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:2000623 ! basipterygium bone [Term] @@ -216242,7 +216244,7 @@ name: epipleural series def: "Anatomical cluster that consists of the epipleurals." [PHENOSCAPE:bf] intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2000350 ! epipleural -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300012 @@ -216259,7 +216261,7 @@ name: paired fin radial skeleton synonym: "paired fin radial series" EXACT [] intersection_of: UBERON:4440008 ! fin radial skeleton intersection_of: part_of UBERON:0002534 ! paired fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0010713 ! paired fin skeleton [Term] @@ -216267,7 +216269,7 @@ id: UBERON:4300014 name: dorsal cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -216275,7 +216277,7 @@ id: UBERON:4300015 name: ventral cleithrum comment: According to Forey 1988, History of the Coelacanth fish:\n\n'In placoderms there are large overlapping plates which completely encircle the body and superficially may be matched with those in osteichthyans (Stensio, 1959; Forey, 1980; Jarvik, 1980). Thus, the anterior median ventral, anteroventral and anterior lateral of placoderms lie in the same positions as the interclavicle, clavicle (ventral cleithrum) and cleithrum (dorsal cleithrum) of osteichthyans.' is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -216284,7 +216286,7 @@ name: pelvic cartilage def: "Cartilage element associated with the pelvic fin in aulopiform fishes." [PHENOSCAPE] comment: Paralepidids (except Anotopterus), Alepisaurus, and evermannellids have a well-developed cartilage that extends dorsally into the body musculature from the region where the lateral pelvic-fin rays articulate with the girdle. In some young specimens, this cartilage is attached by a small rod of cartilage to the cartilage capping the central process, suggesting that it originates as part of the lateral cartilage. A similar cartilage is present in myctophids (Fig. 4A) but lacking in other aulopiforms and outgroups. [From Baldwin CC & Johnson GD (1996) Interrelationships of Aulopiformes. Interrelationships of Fishes, eds Stiassny MLJ, Parenti LR, & Johnson GD (Academic Press, San Diego, CA), pp 355-404.] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000152 ! pelvic fin [Term] @@ -216292,7 +216294,7 @@ id: UBERON:4300017 name: rostrodermethmoid def: "Dermal bone formed by the fusion of dermethmoids and rostral bones [Fink, W L Weitzman, S H. 1982. Relationships of the stomiiform fishes (Teleostei), with a description of Diplophos Bulletin of The Museum of Comparative Zoology 150:31-93. http://www.biodiversitylibrary.org/part/28697]." [PHENOSCAPE] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001709 ! upper jaw region relationship: part_of UBERON:0003112 ! olfactory region @@ -216301,7 +216303,7 @@ id: UBERON:4300018 name: ventral marginal cartilage def: "In the clasper skeleton, a flat semicylindrical cartilage that is partially fused to the lateral edge of the axial cartilage, and forms the lateral wall of the clasper groove [Compagno, L. 2001. Sharks of the World: An Annotated and Illustrated Catalogue of Shark Species Known to Date. Volume 2]." [PHENOSCAPE] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0010518 ! pelvic fin clasper [Term] @@ -216311,7 +216313,7 @@ def: "The large cartilage of the dorsal fin, on which the radials articulate dis synonym: "basal plate" BROAD [] synonym: "dorsal fin basal plate" EXACT [] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000168 ! dorsal fin skeleton [Term] @@ -216322,7 +216324,7 @@ synonym: "anal fin basal plate" EXACT [] synonym: "anal fin base plate" BROAD [] synonym: "basal plate" BROAD [] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000166 ! anal fin skeleton [Term] @@ -216331,7 +216333,7 @@ name: anterolateral plate def: "Dermal bone that is part of the scapular complex in placoderm fishes." [ISBN:3-89937-052-X] synonym: "AL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216341,7 +216343,7 @@ def: "Dermal bone that is part of the scapular complex in placoderms, located in synonym: "anterior ventral plate" EXACT [] synonym: "AV" EXACT [] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216350,7 +216352,7 @@ name: interolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, and located anterior to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] synonym: "IL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216359,7 +216361,7 @@ name: spinal plate def: "Dermal bone that is part of the scapular complex in placoderms, and located lateral to the anterior ventrolateral (AVL) plate." [ISBN:3-89937-052-X] synonym: "Sp" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216368,7 +216370,7 @@ name: posterior dorsolateral plate def: "Dermal bone that is part of the scapular complex in placoderms, located posterior to the main components of the complex." [ISBN:3-89937-052-X] synonym: "PDL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216377,7 +216379,7 @@ name: anterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also posterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] synonym: "AVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216386,7 +216388,7 @@ name: posterior ventrolateral plate def: "Dermal bone that is part of the ventral region of scapular complex in placoderms (see also anterior ventrolateral plate). In most placoderms with a long ventral armour, the ventral wall is typically composed of two large paired lateral plates (anterior and posterior ventrolaterals)." [ISBN:3-89937-052-X] synonym: "PVL" EXACT [ISBN:3-89937-052-X] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000171 ! scapular complex [Term] @@ -216396,14 +216398,14 @@ def: "Dermal articulation between skull and shoulder girdle localized to paired comment: TODO: add ADL and PNu classes and relationships synonym: "cervical neck joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300030 name: flexor caudalis muscle comment: TODO: needs definition. is_a: UBERON:0014892 ! skeletal muscle organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300031 @@ -216411,7 +216413,7 @@ name: fin web def: "Membrane that connects the lepidotrichia or ceratotrichia of a fin." [PHENOSCAPE] synonym: "fin membrane" EXACT [] is_a: UBERON:0000014 ! zone of skin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0008897 ! fin [Term] @@ -216420,7 +216422,7 @@ name: posterior dorsal fin basal cartilage (elasmobranchs) def: "The large cartilage of the posterior dorsal fin, on which the radials articulate distally." [PHENOSCAPE] synonym: "posterior dorsal fin base plate" EXACT [] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4100014 ! posterior dorsal fin [Term] @@ -216429,7 +216431,7 @@ name: anterior dorsal fin basal cartilage (elasmobranchs) def: "The large cartilage of the anterior dorsal fin, on which the radials articulate distally." [PHENOSCAPE] synonym: "anterior dorsal fin base plate" EXACT [] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4200023 ! anterior dorsal fin [Term] @@ -216437,7 +216439,7 @@ id: UBERON:4300034 name: antorbital cartilage def: "Cartilage element on the neurocranium of sawsharks and batoids, separate cartilages attached to the sides of the nasal capsules that support the sides or front of the head. [Compagno, L.J.V. Sharks of the world. An annotated and illustrated catalogue of shark species known to date. Volume 2. Bullhead, mackerel and carpet sharks (Heterodontiformes, Lamniformes and Orectolobiformes). FAO Species Catalogue for Fishery Purposes. No. 1, Vol. 2. Rome, FAO. 2001. 269p. ISBN 92-5-104543-7]." [ISBN:92-5-104543-7] is_a: UBERON:0003932 ! cartilage element of chondrocranium -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001703 ! neurocranium [Term] @@ -216445,7 +216447,7 @@ id: UBERON:4300035 name: supraneural element def: "Endochondral element that is median and located in the dorsal skeletogenous septum between the cranium and the dorsal fin." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0002090 ! postcranial axial skeleton [Term] @@ -216453,7 +216455,7 @@ id: UBERON:4300036 name: supraneural cartilage intersection_of: UBERON:4300035 ! supraneural element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300037 @@ -216461,33 +216463,33 @@ name: bony fin ray def: "Fin ray that is composed of bone tissue." [PHENOSCAPE] is_a: UBERON:0001474 ! bone element is_a: UBERON:4400005 ! fin ray -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300038 name: facet def: "A small smooth area on a bone or other firm structure. A worn spot on a tooth, produced by chewing or grinding." [http://medical-dictionary.thefreedictionary.com/facet] is_a: UBERON:0006984 ! anatomical surface -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0004765 ! skeletal element [Term] id: UBERON:4300081 name: mesopterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300082 name: metapterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300083 name: propterygium element is_a: UBERON:2101587 ! pectoral fin proximal radial element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300087 @@ -216516,7 +216518,7 @@ name: X bone def: "The x bone is a detached neural spine anterior to the neural spine of preural centrum 2." [PHENOSCAPE] comment: In fishes, accessory bones (e.g., X bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). is_a: UBERON:0001076 ! neural spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300091 @@ -216524,13 +216526,13 @@ name: Y bone def: "The y bone is a detached neural spine anterior to the haemal spines of preural centrum 2." [PHENOSCAPE] comment: Comment: In fishes, accessory bones (e.g., Y bone) are common in Gadiformes and rare in Zeiformes (Borden et al., 2013). is_a: UBERON:0001076 ! neural spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300092 name: mesocoracoid element is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -216538,28 +216540,28 @@ id: UBERON:4300096 name: anal fin pterygiophore 1 def: "Anal fin pterygiophore that is the anteriormost of the series." [PHENOSCAPE] is_a: UBERON:2001420 ! anal fin pterygiophore -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300097 name: anal fin spine 1 def: "Anal fin spine that is the anteriormost element of the series." [PHENOSCAPE] is_a: UBERON:2002262 ! anal fin spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300098 name: anal fin spine 2 def: "Anal fin spine that is located posteriorly adjacent to the first anal fin spine." [PHENOSCAPE] is_a: UBERON:2002262 ! anal fin spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300101 name: dorsal fin ceratotrichial spine (elasmobranchs) def: "A small to large enameloid-covered, dentine-cored spine located on the anterior margins of one or both of the dorsal fins, found on bullhead sharks (Heterodontiformes), many dogfish sharks, fossil (but not living) batoids, chimaeroids, but lost entirely or buried in the fin bases of other shark-like fishes [Compagno, Sharks of the World]." [PHENOSCAPE] is_a: UBERON:4400001 ! ceratotrichium -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000168 ! dorsal fin skeleton [Term] @@ -216568,21 +216570,21 @@ name: postcleithral scale def: "Scale that is posteriorly adjacent to the pectoral girdle [Cloutier and Arratia 2004, character 183]." [PHENOSCAPE] is_a: UBERON:0007380 ! dermal scale relationship: adjacent_to UBERON:0007831 ! pectoral girdle skeleton -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300103 name: rudimentary pectoral fin ray def: "Pectoral fin lepidtrichium that is small, unbranched and unsegmented." [PHENOSCAPE] is_a: UBERON:4500007 ! pectoral fin ray -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300104 name: ectocoracoid bone def: "A paired dermal bone in Gasterosteiformes connected with the coracoid and extending posteriorly. Has also been applied to the element below the scapula and applied to the coracoid in Dipnoi. Dictionary of Ichthyology." [PHENOSCAPE] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0007831 ! pectoral girdle skeleton [Term] @@ -216590,14 +216592,14 @@ id: UBERON:4300105 name: caudal vertebra 1 def: "Caudal vertebra that is the anteriormost element of the series." [PHENOSCAPE] is_a: UBERON:0001095 ! caudal vertebra -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300106 name: ventral limb of posttemporal def: "Zone of bone organ that is the ventral extension of the posttemporal." [PHENOSCAPE] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:2000549 ! posttemporal [Term] @@ -216606,7 +216608,7 @@ name: lepidotrichial segment def: "Zone of bone organ that is part of a lepidotrich and connected to other segments by collagen fibers. These segments lend flexibility to the lepidtrich." [DOI:10.1002/jmor.20161] synonym: "segment of fin ray" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000172 ! lepidotrichium [Term] @@ -216614,7 +216616,7 @@ id: UBERON:4300109 name: proximal segment of caudal ray def: "Lepidotrichial segment that is part of the proximal region of a caudal fin ray." [PHENOSCAPE] is_a: UBERON:4300108 ! lepidotrichial segment -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium [Term] @@ -216622,21 +216624,21 @@ id: UBERON:4300110 name: lateral ethmoid cartilage is_a: UBERON:4300111 ! lateral ethmoid element relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300111 name: lateral ethmoid element def: "Endochondral element that separates the olfactory region from the orbit, extends medially to meet its fellow medially below the frontal bones and is bordered by the mesethmoid anteriorly. It may articulate with the autopalatine and infraorbital 1 laterally. The lateral ethmoid is paired." [ZFIN:curator] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300112 name: distal segment of caudal ray def: "Lepidotrichial segment that is part of the distal region of a caudal fin ray." [PHENOSCAPE] is_a: UBERON:4300108 ! lepidotrichial segment -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000174 ! caudal fin lepidotrichium [Term] @@ -216648,7 +216650,7 @@ synonym: "pelvic fin sucking disc" EXACT [] synonym: "sucking disc" BROAD [] synonym: "ventral sucking disc" EXACT [] is_a: UBERON:0000152 ! pelvic fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300115 @@ -216657,7 +216659,7 @@ def: "Distinctive first dorsal fin taking the form of a modified oval sucker-lik comment: For discussion of the homology of the sucking disc and dorsal fin, see Britz and Johnson (2012) (DOI: 10.1002/jmor.20063). synonym: "sucking disk" EXACT [] is_a: UBERON:0003097 ! dorsal fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300116 @@ -216665,7 +216667,7 @@ name: dorsal fin ray def: "Soft ray that is part of the dorsal fin." [PHENOSCAPE] synonym: "dorsal fin soft ray" EXACT [] is_a: UBERON:4000177 ! dorsal fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300117 @@ -216673,7 +216675,7 @@ name: pelvic fin ray def: "Soft ray that is part of the pelvic fin." [PHENOSCAPE] synonym: "pelvic fin soft ray" EXACT [] is_a: UBERON:4000173 ! pelvic fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000152 ! pelvic fin [Term] @@ -216681,7 +216683,7 @@ id: UBERON:4300119 name: glenoid region def: "Region surrounding the glenoid fossa on the scapulocoracoid." [PHENOSCAPE:AD] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -216689,7 +216691,7 @@ id: UBERON:4300120 name: spinous region of dorsal fin def: "Region of dorsal fin that is composed of spinous rays (vs soft rays)." [PHENOSCAPE:LJ] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0003097 ! dorsal fin [Term] @@ -216697,7 +216699,7 @@ id: UBERON:4300121 name: zygantrum def: "A fossa on the posterior median part of the neural arch of a vertebra (as of a snake) that accommodates the zygosphene of the next vertebra." [PHENOSCAPE:JL] is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0003861 ! neural arch [Term] @@ -216712,7 +216714,7 @@ id: UBERON:4300123 name: pre-axial region def: "Anatomical region lying to the anterior or dorsal side of the metapterygial axis." [PHENOSCAPE:AD] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0004710 ! pectoral appendage [Term] @@ -216720,14 +216722,14 @@ id: UBERON:4300124 name: axis intercentrum def: "The intercentrum unit of the axis vertebra. ." [PHENOSCAPE] is_a: UBERON:4200194 ! intercentrum -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300125 name: dorsal iliac ridge def: "Ridge that is part of the ilium." [PHENOSCAPE:AD, WD] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001273 ! ilium [Term] @@ -216735,7 +216737,7 @@ id: UBERON:4300126 name: tectorial restraint system def: "Tectorial restraint system is a type of ciliary restraint system for hair cells in the inner ear. In tectorial restraint systems, the tectorial membrane restrains the cilia of the hair cells by attaching either directly to ciliary tufts or indirectly through various kinds of fibrous structure (simple fibers, fibrous strands, finger-like processes, tectorial plates) [Phylogenetic Relationships of the Lizard Families: Essays Commemorating Charles L. Camp. 1988. Eds. R Estes, GK Pregill. Stanford University Press]." [PHENOSCAPE] is_a: UBERON:0000467 ! anatomical system -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001846 ! internal ear [Term] @@ -216743,7 +216745,7 @@ id: UBERON:4300127 name: nuchal crest def: "Bony protuberance on the external surface of the occipital bone.[PHENOSCAPE:AD]." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0005902 ! occipital region [Term] @@ -216751,7 +216753,7 @@ id: UBERON:4300128 name: sacral rib def: "Elements of the sacrum joining true sacral vertebrae to pelvis [12th edition of Henderson's Dictionary of Biological terms]." [PHENOSCAPE] is_a: UBERON:0002228 ! rib -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0005473 ! sacral region [Term] @@ -216759,14 +216761,14 @@ id: UBERON:4300129 name: dorsal pelvic gland def: "Cloacal glands that secrete into the dorsal roof of the cloacal tube and or the anterior cloacal chamber. Found in male salamanders." [http://www.jstor.org/stable/1466953] is_a: UBERON:0012478 ! cloacal gland -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300130 name: lateral pelvic gland comment: Cloacal gland present in males that secrete into the dorsolateral walls of the cloaca (between dorsal pelvic gland and anterior ventral pelvic gland clusters). Found in salamanders. {xref="http://www.jstor.org/stable/1466953"} is_a: UBERON:0012478 ! cloacal gland -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300132 @@ -216774,7 +216776,7 @@ name: glossopharyngeal nerve foramen def: "Foramen for the passage of the glossopharyngeal nerve IX." [PHENOSCAPE:WD] synonym: "nerve foramen IX" EXACT [] is_a: UBERON:3000051 ! braincase and otic capsule opening -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300133 @@ -216782,14 +216784,14 @@ name: upper jaw symphyseal region def: "The region of the upper jaw on or near the midline." [PHENOSCAPE:WD] synonym: "upper jaw symphysial region" EXACT [] is_a: UBERON:0001709 ! upper jaw region -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300134 name: lateral commissure def: "Region of the braincase which bears the facets for the hyomandibula in fishes. This region disappears in the origin of tetrapods and the space it occipied comes to contribute to the fenestra vestibulii. Clack, JA, 2001. Ch. 23, The otoccipital region. In Major Events in Early Vertebrate Evolution. Per Ahlberg editor." [PHENOSCAPE] is_a: UBERON:0000075 ! subdivision of skeletal system -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0003128 ! cranium [Term] @@ -216799,14 +216801,14 @@ def: "Tooth of the upper jaw that is adjacent to the upper jaw symphysis." [PHEN synonym: "upper jaw symphysial tooth" EXACT [] is_a: UBERON:0001091 ! calcareous tooth relationship: attaches_to UBERON:0011597 ! bone of upper jaw -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300137 name: lingual region def: "The region of an anatomical structure (such as a tooth or jaw bone) facing the tongue." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000165 ! mouth [Term] @@ -216814,7 +216816,7 @@ id: UBERON:4300138 name: labial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the lips.[PHENOSCAPE:WD]." [PHENOSCAPE] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000165 ! mouth [Term] @@ -216822,7 +216824,7 @@ id: UBERON:4300139 name: posterolingual region def: "The region of an anatomical structure, such as a tooth or jaw bone, oriented posteriorly and facing the lips." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000165 ! mouth [Term] @@ -216830,14 +216832,14 @@ id: UBERON:4300140 name: mesial region def: "The region of an anatomical structure, such as a tooth or jaw bone, facing the midline of the jaw." [PHENOSCAPE:WD] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300142 name: internal carotid foramen def: "Foramen for the passage of the internal carotid artery." [PHENOSCAPE] is_a: UBERON:3000051 ! braincase and otic capsule opening -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300143 @@ -216845,7 +216847,7 @@ name: anal fin radial skeleton synonym: "anal fin radial series" EXACT [] intersection_of: UBERON:4440008 ! fin radial skeleton intersection_of: part_of UBERON:4000163 ! anal fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000166 ! anal fin skeleton [Term] @@ -216853,14 +216855,14 @@ id: UBERON:4300144 name: profundus foramen def: "Foramen for the profundus or ophthalmic nerve." [PHENOSCAPE:AD] is_a: UBERON:3000051 ! braincase and otic capsule opening -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300147 name: pectoral fin base def: "Subdivision of organism that is the basal region of the pectoral fin." [PHENOSCAPE:WD] is_a: UBERON:0010758 ! subdivision of organism along appendicular axis -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0000151 ! pectoral fin [Term] @@ -216869,14 +216871,14 @@ name: gill membrane def: "Membrane organ that is usually supported by branchiostegal rays and forms the ventral and posterior wall of the gill cavity." [PHENOSCAPE:WD] synonym: "branchiostegal membrane" RELATED [] is_a: UBERON:0000094 ! membrane organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300151 name: pelvic intercleithral cartilage def: "Cartilage element that lies between processes of the cleithrum and pelvic girdle in gobioid fishes. Posterodorsal to the ventral end of each cleithrum is a posteriorly projecting process. The pelvic intercleithral cartilage (an unpaired, median structure) forms a bridge between the processes (From Springer, 1983)." [http://www.sil.si.edu/smithsoniancontributions/Zoology/pdf_hi/SCTZ-0390.pdf] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0007832 ! pelvic girdle skeleton [Term] @@ -216884,21 +216886,21 @@ id: UBERON:4300152 name: accessory nasal sac def: "Accessory nasal sacs are found in a variety of teleosts (Webb, 1993) and likely assist in ventilating the olfactory epithelium by transmitting pressure fluctuations associated with gill irrigation from theoral cavity to the nasal (or sensory) sac (Jakubowski,1975; Webb, 1993; Belanger et al., 2003). [def from Eastman, J. T. and Lannoo, M. J. (2004)]." [DOI:10.1002/jmor.10221] is_a: UBERON:0000062 ! organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300153 name: Sharpey's fiber def: "Sharpey's fibres (bone fibres, or perforating fibres) are a matrix of connective tissue consisting of bundles of strong collagenous fibres connecting periosteum to bone. They are part of the outer fibrous layer of periosteum, entering into the outer circumferential and interstitial lamellae of bone tissue." [https://en.wikipedia.org/wiki/Sharpey%27s_fibres] is_a: UBERON:0002384 ! connective tissue -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300154 name: procurrent spur def: "A ventrally projecting spur on the posteriormost ventral procurrent caudal ray overlapping ventrally the preceding ray in various percomorphs (Johnson, 1975)." [PHENOSCAPE] is_a: UBERON:0004530 ! bony projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:2001830 ! caudal fin ventral procurrent ray [Term] @@ -216906,14 +216908,14 @@ id: UBERON:4300155 name: pectoral splint def: "Unpaired bone that covers the base of the first pectoral ray. [Filleul and Lavoué 2001]." [PMID:11386087] is_a: UBERON:0001474 ! bone element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0010710 ! pectoral fin skeleton [Term] id: UBERON:4300156 name: anterodorsal crest is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0004753 ! scapulocoracoid [Term] @@ -216921,14 +216923,14 @@ id: UBERON:4300157 name: midshaft def: "Region in the middle of the shaft of a long bone (e.g. humerus, femur etc)." [PHENOSCAPE:NI] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0002495 ! long bone [Term] id: UBERON:4300158 name: ectepicondylar depression is_a: UBERON:0004704 ! bone fossa -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0006807 ! ectepicondyle of humerus [Term] @@ -216947,7 +216949,7 @@ name: pectoral fin bud def: "A paired fin bud that develops into a pectoral fin." [PHENOSCAPE] intersection_of: UBERON:0002531 ! paired fin bud intersection_of: has_potential_to_develop_into UBERON:0000151 ! pectoral fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300173 @@ -216955,7 +216957,7 @@ name: pelvic fin bud def: "A paired fin bud that develops into a pelvic fin." [PHENOSCAPE] intersection_of: UBERON:0002531 ! paired fin bud intersection_of: has_potential_to_develop_into UBERON:0000152 ! pelvic fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300174 @@ -216966,7 +216968,7 @@ synonym: "pyloric caeca" EXACT PLURAL [] synonym: "pyloric caecum" EXACT [] xref: TAO:0002253 is_a: UBERON:0009854 ! digestive tract diverticulum -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: only_in_taxon NCBITaxon:7898 ! Actinopterygii property_value: editor_note "See https://github.com/obophenotype/uberon/issues/368" xsd:string @@ -216975,14 +216977,14 @@ id: UBERON:4300175 name: procumbent dorsal fin spine def: "Fin spine that precedes the dorsal fin, oriented anteriorly towards the head of the fish." [PHENOSCAPE] is_a: UBERON:2002261 ! dorsal fin spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300176 name: parietal branch of the supraorbital canal def: "Branch of supraorbital sensory canal that extends to the parietal." [PHENOSCAPE] is_a: UBERON:2001612 ! sensory canal -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:2001873 ! head sensory canal system [Term] @@ -216991,63 +216993,63 @@ name: replacement tooth row def: "Tooth row consisting of replacement teeth." [PHENOSCAPE] is_a: UBERON:0009678 ! tooth row relationship: composed_primarily_of UBERON:0018296 ! replacement tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300178 name: inner tooth row of dentary def: "Dentary tooth row that is lingual in position relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001952 ! dentary tooth row -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300179 name: inner tooth row of premaxilla def: "Tooth row on the premaxilla that is lingually located relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001833 ! premaxillary tooth row -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300180 name: isthmus def: "The fleshy throat region of a fish which extends forward from the ventral part of the chest and narrows anteriorly, and externally separating the two gill chambers; that narrowed portion of the breast which lies between the gill chambers and separates them." [PHENOSCAPE] {comment="http://www.fishbase.org/glossary/Glossary.php?q=isthmus"} is_a: UBERON:0034929 ! external soft tissue zone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300181 name: posterior sclerotic cartilage def: "Sclerotic cartilage that is located posterior to the eye." [PHENOSCAPE] is_a: UBERON:0010289 ! scleral cartilage -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300182 name: anterior sclerotic cartilage def: "Sclerotic cartilage that is located anterior to the eye." [PHENOSCAPE] is_a: UBERON:0010289 ! scleral cartilage -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300184 name: neural spine 5 def: "Neural spine that is associated with the fifth vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300185 name: neural spine 6 def: "Neural spine that is associated with the sixth vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300186 name: neural spine 7 def: "Neural spine that is associated with the seventh vertebra." [PHENOSCAPE] is_a: UBERON:0001076 ! neural spine -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300187 @@ -217060,7 +217062,7 @@ id: UBERON:4300188 name: terminal scale def: "The posteriormost scale in a scale series." [PHENOSCAPE:WD] is_a: UBERON:0007380 ! dermal scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300189 @@ -217073,7 +217075,7 @@ id: UBERON:4300190 name: claustrum element def: "Postcranial axial skeletal element and Weberian ossicle that is located dorsal to the scaphium. The claustrum skeletal element is bilaterally paired." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0002090 ! postcranial axial skeleton relationship: part_of UBERON:2001871 ! Weberian ossicle set @@ -217082,21 +217084,21 @@ id: UBERON:4300192 name: branched pelvic fin ray def: "Pelvic fin lepidotrichium that is distally branched and segmented." [PHENOSCAPE] is_a: UBERON:4300117 ! pelvic fin ray -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300193 name: unbranched anal fin ray def: "Anal fin lepidotrichium that is not distally branched." [PHENOSCAPE:WD] is_a: UBERON:4500006 ! anal fin ray -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300194 name: photophore def: "A light-emitting organ which appears as luminous spots on various marine animals, including fish and cephalopods." [PHENOSCAPE] {comment="https://en.wikipedia.org/wiki/Photophore"} is_a: UBERON:0000062 ! organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: never_in_taxon NCBITaxon:314146 ! Euarchontoglires [Term] @@ -217155,7 +217157,7 @@ name: endoskeletal cranial joint def: "The braincase of most plesiomorphic sarcopterygians is divided by the intracranial point into ethmosphenoid and otic-occipital portions each covered by dermal bones. The function of the joint is presumably to increase the gape of the mouth rapidly during opening phases. (Forey 1997)." [ISBN:978-0-412-78480-4] synonym: "endoskeletal intracranial joint" EXACT [] is_a: UBERON:0000982 ! skeletal joint -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001703 ! neurocranium [Term] @@ -217163,7 +217165,7 @@ id: UBERON:4300203 name: tectum orbitale def: "The dorsal portion of the endocranium that covers the orbital region. Hanken and Hall (1993)." [ISBN:9780226315706] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0001703 ! neurocranium [Term] @@ -217181,7 +217183,7 @@ def: "Ligament between the palatine and maxilla [Stiassny 1986]." [PHENOSCAPE] is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0001682 ! palatine bone relationship: connects UBERON:0002397 ! maxilla -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300206 @@ -217190,14 +217192,14 @@ def: "Ligament that connects the ventromedial end of the lacrimal to the anguloa is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0004744 ! articular/anguloarticular relationship: connects UBERON:2000223 ! infraorbital 1 -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300207 name: submandibular bone comment: See Gardiner (1984) for discussion of possible homology with branchiostegal rays. Gardiner, B. G. (1984). The Relationships of the palaeoniscid fishes: a review based on new specimens of Mimia and Moythomasia from the Upper Devonian of Western Australia. Bulletin of the British Museum of Natural History (Geology), 37(4), 173-428. is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0003113 ! dermatocranium relationship: part_of UBERON:4300208 ! submandibular series @@ -217207,7 +217209,7 @@ name: submandibular series def: "A series of plate like bones found ventrally to the jaw." [PHENOSCAPE:AD] is_a: UBERON:0000477 ! anatomical cluster relationship: composed_primarily_of UBERON:4300207 ! submandibular bone -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300209 @@ -217216,14 +217218,14 @@ synonym: "palatovomerine ligament" EXACT [] is_a: UBERON:0000211 ! ligament relationship: connects UBERON:0001682 ! palatine bone relationship: connects UBERON:0002396 ! vomer -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300210 name: transversus epibranchialis 2 def: "Dorsal gill-arch muscle connecting right and left epibranchial 2s. Springer and Johnson (2015)." [https://doi.org/10.1643/CI-14-152] is_a: UBERON:0000933 ! chordate pharyngeal muscle -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300211 @@ -217242,70 +217244,70 @@ id: UBERON:4300213 name: supraneural 1 element def: "Postcranial axial skeletal element located dorsal to vertebra 1." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300214 name: supraneural 2 element def: "Postcranial axial skeletal element located dorsal to vertebra 2." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300215 name: supraneural 3 element def: "Postcranial axial skeletal element located dorsal to vertebrae 3 and 4." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300216 name: supraneural 4 element def: "Supraneural element dorsal to neural spine 4." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300217 name: supraneural 5 element def: "Supraneural element dorsal to neural spine 5." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300218 name: supraneural 6 element def: "Supraneural element dorsal to neural spine 6." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300219 name: supraneural 7 element def: "Supraneural element dorsal to neural spine 7." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300220 name: supraneural 8 element def: "Supraneural element dorsal to neural spine 8." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300221 name: supraneural 9 element def: "Supraneural element dorsal to neural spine 9." [PHENOSCAPE] is_a: UBERON:4300035 ! supraneural element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300222 name: axilar scale def: "Scale that is adjacent to the pelvic fin and aligned with the origin of the pelvic fin. It is typically an elongate scale.[Mattox and Toledo-Piza 2012]." [https://doi.org/10.1111/j.1096-3642.2012.00830.x] is_a: UBERON:0007380 ! dermal scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300223 @@ -217315,7 +217317,7 @@ xref: TAO:0000263 xref: ZFA:0000263 intersection_of: UBERON:4300224 ! precaudal vertebra endochondral element intersection_of: composed_primarily_of UBERON:0002481 ! bone tissue -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300224 @@ -217329,7 +217331,7 @@ name: precaudal vertebra cartilage element def: "Vertebral cartilage elements lacking hemal spines (Weitzman, 1962), refers generally to the anterior vertebral region bounding the abdominal cavity. Alternate but not quite synonymous terms are abdominal or trunk vertebrae, which bear parapophyses and ribs. In many actinopterygians dorsal to the posterior abdominal cavity there are transitional vertebrae lacking ribs but also without hemal spines or sometimes even enclosed hemal arches. The primary definition would identify these vertebrae as precaudal.(Bird and Mabee, 2003)." [https://doi.org/10.1002/dvdy.10387] intersection_of: UBERON:4300224 ! precaudal vertebra endochondral element intersection_of: composed_primarily_of UBERON:0002418 ! cartilage tissue -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300226 @@ -217337,7 +217339,7 @@ name: forelimb bud mesenchyme def: "Mesenchyme that is part of a forelimb bud." [PHENOSCAPE] intersection_of: UBERON:0010328 ! limb bud mesenchyme intersection_of: part_of UBERON:0005417 ! forelimb bud -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300227 @@ -217345,7 +217347,7 @@ name: hindlimb bud mesenchyme def: "Mesenchyme that is part of a hindlimb bud." [PHENOSCAPE] intersection_of: UBERON:0010328 ! limb bud mesenchyme intersection_of: part_of UBERON:0005418 ! hindlimb bud -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300228 @@ -217353,7 +217355,7 @@ name: pectoral fin bud mesenchyme def: "Mesechyme that is part of a pectoral fin bud." [PHENOSCAPE] intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:4300172 ! pectoral fin bud -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300229 @@ -217361,7 +217363,7 @@ name: pelvic fin bud mesenchyme def: "Mesechyme that is part of a pelvic fin bud." [PHENOSCAPE] intersection_of: UBERON:0003104 ! mesenchyme intersection_of: part_of UBERON:4300173 ! pelvic fin bud -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300230 @@ -217369,7 +217371,7 @@ name: forelimb wing bud def: "A wing bud that develops into a wing." [PHENOSCAPE] intersection_of: UBERON:0005417 ! forelimb bud intersection_of: has_potential_to_develop_into UBERON:0000024 ! forelimb wing -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300231 @@ -217377,14 +217379,14 @@ name: forelimb wing bud mesenchyme def: "Mesenchyme that is part of a forelimb wing bud." [PHENOSCAPE] intersection_of: UBERON:4300226 ! forelimb bud mesenchyme intersection_of: part_of UBERON:4300230 ! forelimb wing bud -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300233 name: mammiliform tooth def: "Calcareous tooth with a hyptertrophied base." [http://www.scielo.br/scielo.php?script=sci_arttext&pid=S1679-62252004000300008] is_a: UBERON:0001091 ! calcareous tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300234 @@ -217392,34 +217394,34 @@ name: scale sheath def: "Series of scales in which each scale envelopes or overlaps an adjacent scale." [PHENOSCAPE:WD] is_a: UBERON:0000477 ! anatomical cluster relationship: composed_primarily_of UBERON:0007380 ! dermal scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300235 name: spinoid scale def: "A cycloid scale bearing a serrated margin; superficially similar to ctenoid scales but having spines as outgrowths of the scale as oppose to true ctenii." [http://www.fishbase.se/glossary/Glossary.php?q=spinoid+scale] is_a: UBERON:2002285 ! cycloid scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300236 name: rib of vertebra 7 def: "Rib that articulates with the parapophysis of the seventh centrum." [PHENOSCAPE] is_a: UBERON:0002228 ! rib -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300237 name: rib of vertebra 8 def: "Rib that articulates with the parapophysis of the eighth centrum." [PHENOSCAPE] is_a: UBERON:0002228 ! rib -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300238 name: pored lateral line scale is_a: UBERON:2001824 ! lateral line scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300239 @@ -217427,14 +217429,14 @@ name: hind flipper def: "Hindlimb that is used to propel an animal through water." [PHENOSCAPE] synonym: "hindflipper" EXACT [] is_a: UBERON:0002103 ! hindlimb -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300240 name: rostral ossicle def: "Ossicle that surrounds the sensory canals of the snout when passing from the ethmoidal commissure to the infraorbital series and have first been noticed by Nybelin [14] in Elops. From: Filleul and Lavoué. (2001). Basal teleosts and the question of elopomorph monophyly. Morphological and molecular approaches. Comptes rendus de l'Académie des sciences. Série III, Sciences de la vie. 324. 393-9. 10.1016/S0764-4469(00)01302-0." [PHENOSCAPE] is_a: UBERON:0010911 ! ossicle -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300241 @@ -217442,49 +217444,49 @@ name: ethmoid commissure def: "Sensory canal that traverses the rostral bone." [PHENOSCAPE] synonym: "ethmoid lateral line commissure" EXACT [] is_a: UBERON:2001612 ! sensory canal -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300242 name: lateral line scale 6 def: "The sixth scale in the lateral line series." [PHENOSCAPE] is_a: UBERON:2001824 ! lateral line scale -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300243 name: premaxillary tooth 2 def: "Premaxillary tooth that is the second tooth in a premaxillary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:2001626 ! premaxillary tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300244 name: premaxillary tooth 3 def: "Premaxillary tooth that is the third tooth in a premaxillary tooth series, and positioned adjacent to the second tooth." [PHENOSCAPE] is_a: UBERON:2001626 ! premaxillary tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300246 name: dentary tooth 2 def: "Dentary tooth that is the second tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:0011594 ! dentary tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300247 name: dentary tooth 3 def: "Dentary tooth that is the third tooth in a dentary tooth series, and positioned adjacent to the symphyseal tooth." [PHENOSCAPE] is_a: UBERON:0011594 ! dentary tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300248 name: fused hypural 1 and 2 def: "Single hypural element formed from the fusion of hypural 1 and 2." [PHENOSCAPE] is_a: UBERON:2000364 ! hypural -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300249 @@ -217516,7 +217518,7 @@ id: UBERON:4300261 name: pectoral fin hook def: "Process that is part of the pectoral fin lepidotrichium." [PHENOSCAPE] is_a: UBERON:4300284 ! fin hook -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000175 ! pectoral fin lepidotrichium [Term] @@ -217524,7 +217526,7 @@ id: UBERON:4300262 name: pelvic fin hook def: "Process that is part of the pelvic fin lepidotrichium." [PHENOSCAPE] is_a: UBERON:4300284 ! fin hook -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000173 ! pelvic fin lepidotrichium [Term] @@ -217569,7 +217571,7 @@ name: epioccipital bridge def: "Extension of the exoccipital that extends over the posttemporal fossa." [http://dx.doi.org/10.1590/S1679-62252010000300001] synonym: "epiotic bridge" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:2001412 ! epiotic [Term] @@ -217577,7 +217579,7 @@ id: UBERON:4300270 name: outer tooth row of premaxilla def: "Tooth row on the premaxilla that is labially located relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001833 ! premaxillary tooth row -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300271 @@ -217601,7 +217603,7 @@ name: adipose fin ray def: "Soft ray that is part of the adipose fin." [https://doi.org/10.1098/rspb.2013.3120] intersection_of: UBERON:4000172 ! lepidotrichium intersection_of: part_of UBERON:2000251 ! adipose fin -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4500004 ! adipose fin skeleton [Term] @@ -217616,7 +217618,7 @@ id: UBERON:4300279 name: outer tooth row of dentary def: "Dentary tooth row that is labial in position relative to other tooth rows." [PHENOSCAPE] is_a: UBERON:2001952 ! dentary tooth row -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300280 @@ -217624,7 +217626,7 @@ name: metapterygoid tooth def: "Tooth that is attached to the metapterygoid." [PHENOSCAPE] synonym: "metapterygoid teeth" RELATED [] is_a: UBERON:0001091 ! calcareous tooth -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300281 @@ -217632,7 +217634,7 @@ name: dorsal fin hook def: "Anatomical projection that is part of the anal fin lepidotrichium." [PHENOSCAPE] synonym: "dorsal-fin hook" EXACT [] is_a: UBERON:4300284 ! fin hook -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000177 ! dorsal fin lepidotrichium [Term] @@ -217652,7 +217654,7 @@ id: UBERON:4300284 name: fin hook def: "Anatomical projection that is part of a fin." [PHENOSCAPE] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:4000172 ! lepidotrichium [Term] @@ -217661,14 +217663,14 @@ name: second preethmoid cartilage def: "Cartilage element found between the preethmoid and maxilla." [PHENOSCAPE] is_a: UBERON:0007844 ! cartilage element is_a: UBERON:4300286 ! second preethmoid element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300286 name: second preethmoid element def: "Endochondral skeletal element found between the preethmoid and maxilla." [PHENOSCAPE] is_a: UBERON:0010363 ! endochondral element -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul relationship: part_of UBERON:0003112 ! olfactory region [Term] @@ -217676,7 +217678,7 @@ id: UBERON:4300287 name: nasal barbel def: "Barbel that is associated with a nostril. Nasal barbels are paired." [PHENOSCAPE] is_a: UBERON:2000622 ! barbel -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4300288 @@ -217684,7 +217686,7 @@ name: rictal barbel def: "Barbel located from the fleshy corner of the mouth." [PHENOSCAPE] comment: Definition needs review. Rictal barbels are described for trichomycterids and other catfishes. is_a: UBERON:2000622 ! barbel -relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 +relationship: dc-contributor https://orcid.org/0000-0003-3162-7490 ! Wasila M Dahdul [Term] id: UBERON:4400000 @@ -217765,14 +217767,14 @@ id: UBERON:4500002 name: upper uroneural def: "Uroneurals that form the uppermost three uroneural series that overlap, and lie at an angle to, longer anterior ones." [http://hdl.handle.net/2246/1224] is_a: UBERON:2000602 ! uroneural -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500003 name: predorsal scale def: "Scale that is part of row along the midline between the dorsal fin and the back of the skull. In counting, all scales crossing the midline are included. (Fishbase) ." [PHENOSCAPE] is_a: UBERON:0007380 ! dermal scale -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500004 @@ -217780,7 +217782,7 @@ name: adipose fin skeleton def: "Median fin skeleton supporting the adipose fin." [PHENOSCAPE] intersection_of: UBERON:0010912 ! subdivision of skeleton intersection_of: skeleton_of UBERON:2000251 ! adipose fin -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:2000251 ! adipose fin [Term] @@ -217788,7 +217790,7 @@ id: UBERON:4500005 name: prenasal ossicle def: "Tubular ossifications around extension of nasal lateral line canal in fishes; typically one or two." [PHENOSCAPE] is_a: UBERON:0008907 ! dermal bone -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0011156 ! facial skeleton property_value: provenance_notes "One or two tubular ossifications (prenasals) around extension of nasal canal in Carangiformes (Freihofer 1978, Smith-Vaniz 1984, Johnson 1984; found elsewhere only in Toxotidae of Perciformes) and some Elopomorpha from Wiley and Johnson, 2010. Wiley, E.O. & Johnson, G.D. 2010. A teleost classification based on monophyletic groups. In J.S. Nelson, H.-P. Schultze & M.V.H. Wilson (eds.), Origin and Phylogenetic Interrelationships of Teleosts. Verlag Dr. Friedrich Pfeil, München, Germany: 123-182." xsd:string @@ -217798,7 +217800,7 @@ name: anal fin ray def: "Soft ray that is part of the anal fin." [PHENOSCAPE] synonym: "anal fin soft ray" EXACT [] is_a: UBERON:4000176 ! anal fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500007 @@ -217806,7 +217808,7 @@ name: pectoral fin ray def: "Soft ray that is part of the pectoral fin." [PHENOSCAPE] synonym: "pectoral fin soft ray" EXACT [] is_a: UBERON:4000175 ! pectoral fin lepidotrichium -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500008 @@ -217814,7 +217816,7 @@ name: median fin lepidotrichium def: "Lepidotrichium that is part of a median fin." [PHENOSCAPE] intersection_of: UBERON:4000172 ! lepidotrichium intersection_of: part_of UBERON:4000162 ! median fin -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:4000170 ! median fin skeleton [Term] @@ -217822,7 +217824,7 @@ id: UBERON:4500009 name: paired fin spine def: "Fin spine that is part of a paired fin." [PHENOSCAPE] is_a: UBERON:4200075 ! fin spine -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0002534 ! paired fin [Term] @@ -217831,7 +217833,7 @@ name: unbranched pectoral fin ray def: "Pectoral fin lepidotrichium that is not distally branched." [PHENOSCAPE] synonym: "pectoral fin unbranched ray" EXACT [] is_a: UBERON:4500007 ! pectoral fin ray -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500011 @@ -217839,7 +217841,7 @@ name: unbranched pelvic fin ray def: "Pelvic fin lepidotrichium that is not distally branched." [PHENOSCAPE] synonym: "pelvic fin unbranched ray" EXACT [] is_a: UBERON:4300117 ! pelvic fin ray -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson [Term] id: UBERON:4500012 @@ -217848,7 +217850,7 @@ def: "Anatomical cluster that consists of the hypobranchial elements within an i is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001893 ! hypobranchial element -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] @@ -217858,7 +217860,7 @@ def: "Anatomical cluster that consists of the pharyngobranchial elements within is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:2001909 ! pharyngobranchial element -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] @@ -217868,7 +217870,7 @@ def: "Anatomical cluster that consists of the basibranchial elements within an i is_a: UBERON:0000477 ! anatomical cluster intersection_of: UBERON:0000477 ! anatomical cluster intersection_of: composed_primarily_of UBERON:0013746 ! basibranchial element -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton [Term] @@ -217878,7 +217880,7 @@ def: "Pharyngeal arch bone immediately posterior to the ascending process, the m comment: The change from a premaxilla in which the ascending and articular processes are separate to one in which they are firmly united has occurred many times in higher teleosts. - Gosline, 1987 (Jaw Structures and Movements in Higher Teleostean Fishes) synonym: "articular process of the premaxilla" EXACT [] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0002244 ! premaxilla [Term] @@ -217886,7 +217888,7 @@ id: UBERON:4500017 name: interarcual bone def: "Pharyngeal arch bone located between uncinate process of epibranchial 1 and pharyngobranchial 2." [PHENOSCAPE] is_a: UBERON:0002513 ! endochondral bone -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: develops_from UBERON:2002269 ! interarcual cartilage relationship: part_of UBERON:0005886 ! post-hyoid pharyngeal arch skeleton @@ -217896,7 +217898,7 @@ name: premaxilla maxillary process def: "Process of the premaxilla that extends upward, and often lies against the medial surface of the maxillary." [PHENOSCAPE] synonym: "postmaxillary process" EXACT [] is_a: UBERON:0004529 ! anatomical projection -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0002244 ! premaxilla [Term] @@ -217907,7 +217909,7 @@ is_a: UBERON:0007844 ! cartilage element is_a: UBERON:1600008 ! pelvic fin distal radial element is_a: UBERON:2001538 ! pelvic radial cartilage relationship: composed_primarily_of UBERON:0002418 ! cartilage tissue -relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 +relationship: dc-contributor https://orcid.org/0000-0002-5378-0931 ! Laura M Jackson relationship: part_of UBERON:0000152 ! pelvic fin [Term] @@ -218848,7 +218850,7 @@ name: insect dorsal ectoderm synonym: "AdorEc" RELATED [] synonym: "dorEc" RELATED [] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: develops_from UBERON:6005428 ! insect dorsal ectoderm anlage +relationship: develops_from UBERON:6005427 ! insect ectoderm anlage relationship: part_of UBERON:6007045 ! insect trunk ectoderm [Term] @@ -218867,7 +218869,7 @@ synonym: "AtrunkMes" RELATED [] synonym: "P2 TrMes" RELATED [FBC:DOS] synonym: "TrMes" RELATED [] is_a: UBERON:0000926 ! mesoderm -relationship: develops_from UBERON:6005436 ! insect trunk mesoderm anlage +relationship: develops_from UBERON:6000104 ! insect mesoderm anlage relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda [Term] @@ -219107,7 +219109,6 @@ synonym: "optic lobe primordium" RELATED [] synonym: "P2 VisSys" RELATED [FBC:DOS] is_a: UBERON:0001048 ! primordium is_a: UBERON:6025991 ! insect anterior ectoderm derivative -relationship: develops_from UBERON:6005434 ! insect visual anlage relationship: part_of UBERON:0000922 ! embryo [Term] @@ -219906,13 +219907,11 @@ relationship: part_of UBERON:6110636 ! insect adult cerebral ganglion [Term] id: UBERON:6004203 -name: insect adult clypeo-labral anlage -def: "." [FBC:VH] -synonym: "A AdCly" RELATED [FBC:DOS] -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0007688 ! anlage -relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium -relationship: part_of UBERON:0000922 ! embryo +name: obsolete insect adult clypeo-labral anlage +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:6005514 [Term] id: UBERON:6004296 @@ -220255,11 +220254,11 @@ relationship: part_of UBERON:0007023 ! adult organism [Term] id: UBERON:6005413 -name: insect anlage in statu nascendi -def: "'anlagen in statu nascendi' are domains that do not yet coincide 1:1 with a later organ. Anlagen in statu nascendi are typically defined for the early blastoderm by the expression domains of genes which, in the late blastoderm or later, are expressed in specific anlagen, but initially come on in larger domains." [FlyBase:FBrf0178740] -synonym: "A0" RELATED [] -is_a: UBERON:0002050 ! embryonic structure -relationship: only_in_taxon NCBITaxon:50557 ! Insecta +name: obsolete insect anlage in statu nascendi +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:0007688 [Term] id: UBERON:6005425 @@ -220275,35 +220274,35 @@ relationship: only_in_taxon NCBITaxon:50557 ! Insecta [Term] id: UBERON:6005428 -name: insect dorsal ectoderm anlage -is_a: UBERON:0007688 ! anlage -relationship: part_of UBERON:6005427 ! insect ectoderm anlage +name: obsolete insect dorsal ectoderm anlage +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:6005427 [Term] id: UBERON:6005434 -name: insect visual anlage -synonym: "A VisSys" RELATED [FBC:DOS] -synonym: "AVis" RELATED [] -is_a: UBERON:0007688 ! anlage -relationship: part_of UBERON:6000119 ! insect anterior ectoderm +name: obsolete insect visual anlage +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:6001059 [Term] id: UBERON:6005436 -name: insect trunk mesoderm anlage -synonym: "Asn/A TrMes" RELATED [FBC:DOS] -is_a: UBERON:0002050 ! embryonic structure -is_a: UBERON:0007688 ! anlage -relationship: in_taxon NCBITaxon:6656 {source="https://github.com/obophenotype/uberon/issues/2050"} ! Arthropoda -relationship: part_of UBERON:6000104 ! insect mesoderm anlage +name: obsolete insect trunk mesoderm anlage +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:6000128 [Term] id: UBERON:6005439 -name: insect clypeo-labral anlage -def: "." [FBC:DOS, FBC:VH] -synonym: "A Cly" RELATED [FBC:DOS] -synonym: "clypeo-labral specific anlage" RELATED [] -is_a: UBERON:0007688 ! anlage -relationship: part_of UBERON:6000119 ! insect anterior ectoderm +name: obsolete insect clypeo-labral anlage +comment: Obsoleted as this level of precision is deemed unnecessary for Uberon. +property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2972" xsd:anyURI +is_obsolete: true +consider: UBERON:6005538 [Term] id: UBERON:6005461 @@ -220328,7 +220327,7 @@ name: insect adult clypeo-labral primordium synonym: "A AdCly" RELATED [FBC:DOS] is_a: UBERON:0001048 ! primordium is_a: UBERON:6001648 ! insect embryonic imaginal precursor -relationship: develops_from UBERON:6004203 ! insect adult clypeo-labral anlage +relationship: develops_from UBERON:6005538 ! insect clypeo-labral primordium relationship: part_of UBERON:0000323 ! late embryo relationship: part_of UBERON:0000922 ! embryo @@ -220359,7 +220358,6 @@ name: insect clypeo-labral primordium synonym: "ClyP2" RELATED [] is_a: UBERON:0001048 ! primordium is_a: UBERON:6025991 ! insect anterior ectoderm derivative -relationship: develops_from UBERON:6005439 ! insect clypeo-labral anlage relationship: part_of UBERON:0000922 ! embryo [Term] @@ -220869,7 +220867,7 @@ name: proximal-most point of head of femur def: "The proximal-most point of the head of a femur." [https://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006767 ! head of femur -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500047 @@ -220877,7 +220875,7 @@ name: proximal-most point of head of humerus def: "The proximal-most point of the head of a humerus." [https://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0006801 ! proximal head of humerus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500048 @@ -220885,7 +220883,7 @@ name: proximal-most point of ventral tubercle of humerus def: "The proximal-most point of the ventral tubercle of a humerus." [https://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0011187 ! ventral tubercle of humerus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500049 @@ -220893,7 +220891,7 @@ name: proximal-most point of greater trochanter of femur def: "The proximal-most point of the greater trochanter of a femur." [https://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0006983 ! anatomical point intersection_of: proximalmost_part_of UBERON:0002503 ! greater trochanter -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500050 @@ -220919,7 +220917,7 @@ synonym: "lower fourth permanent molar tooth" EXACT [] synonym: "m4" RELATED ABBREVIATION [] is_a: UBERON:0003667 ! lower jaw molar is_a: UBERON:0013618 ! secondary molar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500053 @@ -220930,7 +220928,7 @@ synonym: "p4" RELATED ABBREVIATION [] intersection_of: UBERON:0018647 ! premolar tooth 4 intersection_of: part_of UBERON:0001710 ! lower jaw region intersection_of: part_of UBERON:0007774 ! secondary dentition -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500054 @@ -220940,7 +220938,7 @@ synonym: "lower third permanent premolar tooth" EXACT [] synonym: "p3" RELATED ABBREVIATION [] is_a: UBERON:0016943 ! lower premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500055 @@ -220950,7 +220948,7 @@ synonym: "fourth molar tooth" EXACT [] synonym: "molar 4" EXACT [] synonym: "molar 4 tooth" EXACT [] is_a: UBERON:0003655 ! molar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500056 @@ -220959,7 +220957,7 @@ def: "The premolar tooth of the upper or lower jaw that is phylogenetically numb synonym: "premolar tooth 3" EXACT [] synonym: "third premolar tooth" EXACT [] is_a: UBERON:0007120 ! premolar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500057 @@ -220969,7 +220967,7 @@ synonym: "M4" RELATED ABBREVIATION [] synonym: "upper fourth permanent molar tooth" EXACT [] is_a: UBERON:0003666 ! upper jaw molar is_a: UBERON:0013618 ! secondary molar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500058 @@ -220979,7 +220977,7 @@ synonym: "P4" RELATED ABBREVIATION [] synonym: "upper fourth permanent premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500059 @@ -220989,7 +220987,7 @@ synonym: "P3" RELATED ABBREVIATION [] synonym: "upper third permanent premolar tooth" EXACT [] is_a: UBERON:0016944 ! upper premolar tooth is_a: UBERON:0017270 ! secondary premolar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500060 @@ -221004,7 +221002,7 @@ id: UBERON:7500061 name: trochlear ridge of humerus def: "The ridge of the trochlea on a humerus lies in the middle of the distal end of a humerus on the lateral side of the trochlea and the medial side of the capitulum (capitellum)." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0000144 ! trochlea of humerus [Term] @@ -221014,7 +221012,7 @@ def: "The tibial tuberosity is on the anterior side of a tibia and is where a pa synonym: "fossa digitalis" EXACT [] intersection_of: UBERON:0005813 ! tubercle intersection_of: part_of UBERON:0008772 ! proximal epiphysis of tibia -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500063 @@ -221024,7 +221022,7 @@ synonym: "trochlea for tibia" EXACT [] synonym: "trochlea of astragalus" EXACT [] synonym: "trochlea tali" EXACT [] is_a: UBERON:7500081 ! articular surface for the tibia on the talus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500064 @@ -221032,7 +221030,7 @@ name: trochlear groove of talus def: "The furrow between the lateral and medial condyles of the trochlea of talus." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "trochlear groove of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002395 ! talus [Term] @@ -221042,7 +221040,7 @@ def: "An articular prominence of a talus that engages with the tibia." [http://o synonym: "condyle of astragalus" EXACT [] intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0002395 ! talus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500066 @@ -221050,7 +221048,7 @@ name: medial condyle of talus def: "The medial condyle of talus is an articular prominence of bone on medial side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] synonym: "medial condyle of astragalus" EXACT [] is_a: UBERON:0009979 ! condyle -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002395 ! talus [Term] @@ -221059,7 +221057,7 @@ name: lateral condyle of talus def: "The lateral condyle of talus is an articular prominence of bone on the lateral side of the trochlea of a talus, which engages with the tibia." [https://orcid.org/0000-0003-2699-3066] synonym: "lateral condyle of astragalus" EXACT [] is_a: UBERON:0009979 ! condyle -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002395 ! talus [Term] @@ -221068,7 +221066,7 @@ name: ridge of medial condyle of talus def: "The crest of the medial condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of medial condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:7500066 ! medial condyle of talus [Term] @@ -221077,7 +221075,7 @@ name: ridge of lateral condyle of talus def: "The crest of the lateral condyle of a talus." [https://orcid.org/0000-0003-2699-3066] synonym: "ridge of lateral condyle of astragalus" EXACT [] is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:7500067 ! lateral condyle of talus [Term] @@ -221086,7 +221084,7 @@ name: sulcus tali def: "A depression that runs between the two facets of a talus that interact with a calcaneum." [https://en.wikipedia.org/wiki/Talus_bone] synonym: "sulcus for flexor hallucis longus tendon" EXACT [] is_a: UBERON:0000093 ! sulcus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002395 ! talus [Term] @@ -221097,7 +221095,7 @@ synonym: "beak" RELATED [] synonym: "muzzle" RELATED [] synonym: "snout" RELATED [] is_a: UBERON:0000475 ! organism subdivision -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: never_in_taxon NCBITaxon:9606 ! Homo sapiens relationship: part_of UBERON:0003128 ! cranium relationship: part_of UBERON:0004089 ! midface @@ -221108,7 +221106,7 @@ name: left nasal bone def: "Nasal bone on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500074 @@ -221116,7 +221114,7 @@ name: right nasal bone def: "Nasal bone on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0001681 ! nasal bone intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500075 @@ -221124,7 +221122,7 @@ name: left zygomatic arch def: "Zygomatic arch on the left side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500076 @@ -221132,7 +221130,7 @@ name: right zygomatic arch def: "Zygomatic arch on the right side of an organism when in anatomical position." [http://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0002500 ! zygomatic arch intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500077 @@ -221150,7 +221148,7 @@ synonym: "radial condyle" EXACT [] synonym: "radial styloid process" EXACT [] intersection_of: UBERON:0009979 ! condyle intersection_of: part_of UBERON:0004407 ! distal epiphysis of radius -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500079 @@ -221159,7 +221157,7 @@ def: "A condyle on the distal end and medial side of a radius that interacts wit synonym: "sigmoid cavity" EXACT [] synonym: "ulnar condyle of radius" EXACT [] is_a: UBERON:0004120 ! mesoderm-derived structure -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: in_taxon NCBITaxon:9788 ! Equidae relationship: part_of UBERON:0004407 ! distal epiphysis of radius @@ -221169,7 +221167,7 @@ name: articular surface for carpals def: "The articular surface on the distal end of a radius that interacts with carpals." [https://orcid.org/0000-0003-2699-3066] synonym: "distal articular surface of radius" EXACT [] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0004407 ! distal epiphysis of radius [Term] @@ -221177,7 +221175,7 @@ id: UBERON:7500081 name: articular surface for the tibia on the talus def: "Contact surface between the tibia and the talus located on the talus." [https://en.wikipedia.org/wiki/Talus_bone] is_a: UBERON:4100003 ! articular surface -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002395 ! talus [Term] @@ -221185,7 +221183,7 @@ id: UBERON:7500083 name: greater palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate, for the transmission of the descending palatine vessels and greater palatine nerve." [FMA:53173, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Greater_palatine_foramen&oldid=971687677] is_a: UBERON:0013685 ! foramen of skull -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -221193,7 +221191,7 @@ id: UBERON:7500084 name: lesser palatine foramen def: "A foramen of the skull found at either posterior angle of the hard palate behind the greater palatine foramen. One or more lesser palatine foramina perforate the pyramidal process of the palatine bone and carry the lesser palatine nerve." [FMA:53167, https://orcid.org/0000-0002-2825-0621, WikipediaVersioned:Lesser_palatine_foramina&oldid=870872639] is_a: UBERON:0013685 ! foramen of skull -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001682 ! palatine bone [Term] @@ -221203,7 +221201,7 @@ def: "A pulp-dentin complex or endodont that is part of a calcareous tooth." [ht synonym: "endodont" EXACT [] synonym: "pulp-dentin complex" EXACT [] is_a: UBERON:0010365 ! odontoid tissue -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: has_part UBERON:0001751 ! dentine relationship: has_part UBERON:0001754 ! dental pulp relationship: part_of UBERON:0001091 ! calcareous tooth @@ -221222,7 +221220,7 @@ name: posterior articular facet for talus of calcaneus def: "Posterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "proximal facet of calcaneum" EXACT [] is_a: UBERON:4300038 ! facet -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -221230,7 +221228,7 @@ id: UBERON:7500091 name: middle articular facet for talus of calcaneus def: "Middle facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] is_a: UBERON:4300038 ! facet -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -221239,7 +221237,7 @@ name: anterior articular facet for talus of calcaneus def: "Anterior-most facet on the proximal surface of the calcaneus for the articulation of the talus bone." [https://orcid.org/0000-0003-2699-3066] synonym: "distal facet of calcaneum" EXACT [] is_a: UBERON:4300038 ! facet -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -221248,7 +221246,7 @@ name: calcaneal body def: "The calcaneus body is the part of the bone not used for articulation with other bones." [https://orcid.org/0000-0003-2699-3066] synonym: "corpus calcanei" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001450 ! calcaneus [Term] @@ -221260,7 +221258,7 @@ synonym: "calcaneal tuberosity" EXACT [] synonym: "tuberosity of calcaneus" EXACT [] intersection_of: UBERON:0005813 ! tubercle intersection_of: part_of UBERON:0001450 ! calcaneus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500095 @@ -221268,7 +221266,7 @@ name: lateral tubercle of calcaneus def: "A raised projection on the lateral side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "lateral tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500096 @@ -221276,14 +221274,14 @@ name: medial tubercle of calcaneus def: "A raised projection on the medial side of a calcaneus." [https://orcid.org/0000-0003-2699-3066] synonym: "medial tuberosity of calcaneus" EXACT [] is_a: UBERON:7500094 ! tubercle of calcaneus -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500101 name: antorbital notch def: "The antorbital notch is a prominence of bone located anterolaterally of the antorbital fenestra." [doi:10.5479/si.00810282.627] is_a: UBERON:4200230 ! surface of bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0003129 ! skull relationship: present_in_taxon NCBITaxon:9721 ! Cetacea relationship: present_in_taxon NCBITaxon:9788 ! Equidae @@ -221303,7 +221301,7 @@ def: "A hollow (fossa) in the preorbital region, typically lying on the maxillar intersection_of: UBERON:0004704 ! bone fossa intersection_of: part_of UBERON:7500102 ! preorbital bone region relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500105 @@ -221311,7 +221309,7 @@ name: coracoid process of calcaneus def: "At the dorsal part of the base of the calcaneal tuberoisty is a pointed process called the coracoid process." [https://link.springer.com/article/10.1007/s00276-003-0220-0, https://www.imaios.com/en/vet-Anatomy/Vet-Anatomical-Part/Coracoid-process2] synonym: "processus coracoideus of calcaneus" EXACT [] is_a: UBERON:0005913 ! zone of bone organ -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:7500094 ! tubercle of calcaneus [Term] @@ -221320,7 +221318,7 @@ name: hormion def: "A craniometric point at the junction of the posterior midline border of the vomer with the sphenoid bone on the sphenovomerine suture." [https://locatelambda.org/manual, https://medical-dictionary.thefreedictionary.com/hormion, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:7500107 ! sphenovomerine suture property_value: depicted_by "http://locatelambda.org/wp-content/uploads/2018/02/hormion.jpg" xsd:string @@ -221332,7 +221330,7 @@ intersection_of: UBERON:0009199 ! facial suture intersection_of: connects UBERON:0001677 ! sphenoid bone intersection_of: connects UBERON:0002396 ! vomer relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500108 @@ -221343,7 +221341,7 @@ synonym: "cheekteeth" RELATED PLURAL [] synonym: "cheektooth" EXACT [] is_a: UBERON:0013164 ! molariform tooth relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500109 @@ -221351,7 +221349,7 @@ name: basion def: "An anatomical point on the antero-ventral margin of foramen magnum in the median plane." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0003687 ! foramen magnum [Term] @@ -221359,7 +221357,7 @@ id: UBERON:7500110 name: synsphenion def: "A craniometric point on the ventral surface of the intersphenoid suture, along the midline of the skull." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:7500111 ! intersphenoid suture [Term] @@ -221370,7 +221368,7 @@ synonym: "intersphenoidal synchondrosis" EXACT [DOI:10.1038/s41598-022-04783-1] intersection_of: UBERON:0009199 ! facial suture intersection_of: connects UBERON:0006428 ! basisphenoid bone intersection_of: connects UBERON:0008828 ! presphenoid bone -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk property_value: development_notes "This fuses in childhood in humans." xsd:string {xref="DOI:10.2214/ajr.104.1.184"} [Term] @@ -221381,7 +221379,7 @@ comment: Often this point is midway between the median upper incisor teeth. In r synonym: "alveolar point" EXACT [https://www.vocabulary.com/dictionary/alveolar%20point] synonym: "prostheon" EXACT [https://medical-dictionary.thefreedictionary.com/prostheon] is_a: UBERON:0006983 ! anatomical point -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002244 ! premaxilla [Term] @@ -221389,7 +221387,7 @@ id: UBERON:7500113 name: akrokranion def: "The most dorsoanterior point on the supraoccipital crest in the medial plane." [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:2001783 ! supraoccipital crest [Term] @@ -221400,7 +221398,7 @@ synonym: "cheektooth row" EXACT [https://orcid.org/0000-0003-2699-3066] intersection_of: UBERON:0034926 ! anatomical row intersection_of: has_member UBERON:7500108 ! cheek tooth relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500115 @@ -221408,7 +221406,7 @@ name: sagittal crest def: "A ridge or similar projection rising above the surface of an anatomical strucuture along the sagittal (midline) plane." [https://orcid.org/0000-0003-2699-3066] synonym: "sagittal ridge" EXACT [] is_a: UBERON:4200133 ! crest -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500117 @@ -221417,14 +221415,14 @@ def: "A craniometric point which is the furthest point from the glabella along t comment: In pigs this point is projected into space as a point between a line connecting the aboral points of the right and left superior nuchal lines. {xref="ISBN:9780873659505"} synonym: "opisthokranion" EXACT [ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500118 name: opisthion def: "A craniometric point at the posterior margin of the foramen magnum along the midline." [https://locatelambda.org/manual/, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0003687 ! foramen magnum property_value: depicted_by "http://locatelambda.org/wp-content/uploads/2018/02/opisthion.jpg" xsd:string @@ -221434,7 +221432,7 @@ name: ectorbitale def: "An anatomical point on the most lateral point of the frontal bone of tetrapods on the occipital side of the orbit." [ISBN:9004086161, ISBN:9789004086166] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0000209 ! tetrapod frontal bone [Term] @@ -221443,7 +221441,7 @@ name: zygion def: "The most lateral anatomical point of the zygomatic arch." [ISBN:9004086161\,9789004086166] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0002500 ! zygomatic arch [Term] @@ -221458,7 +221456,7 @@ synonym: "paramastoid process" EXACT [DOI:10.1016/j.wneu.2018.06.056] synonym: "paraoccipital" EXACT [DOI:10.1016/j.wneu.2018.06.056] is_a: UBERON:0004529 ! anatomical projection relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0001676 ! occipital bone [Term] @@ -221467,7 +221465,7 @@ name: incisor tooth 3 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 3." [https://orcid.org/0000-0003-2699-3066] synonym: "third incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500124 @@ -221475,7 +221473,7 @@ name: incisor tooth 4 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 4." [https://orcid.org/0000-0003-2699-3066] synonym: "fourth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500125 @@ -221483,7 +221481,7 @@ name: incisor tooth 5 def: "The incisor tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] synonym: "fifth incisor tooth" EXACT [] is_a: UBERON:0001098 ! incisor tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500126 @@ -221491,7 +221489,7 @@ name: molar tooth 5 def: "The molar tooth of the upper or lower jaw that is phylogenetically number 5." [https://orcid.org/0000-0003-2699-3066] synonym: "fifth molar tooth" EXACT [] is_a: UBERON:0003655 ! molar tooth -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk [Term] id: UBERON:7500127 @@ -221499,7 +221497,7 @@ name: otion def: "The most lateral anatomical point on the mastoid process of temporal bone." [http://desinfos.eu/archeozoologie.desinfos.eu/PERSO/Aides%20determination/Osteometrie/Von%20Den%20Driesch\,%201976\,%20A%20guide%20to%20the%20measurement%20of%20animal%20bones%20from%20archaeological%20sites.pdf, ISBN:9780873659505] is_a: UBERON:0006983 ! anatomical point relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk relationship: part_of UBERON:0011220 ! mastoid process of temporal bone property_value: depicted_by "ISSN:0372-5480, Fig. 1, \"Ot\" (https://intranet.vef.hr/vetarhiv/papers/2014-84-4-6.pdf)" xsd:string property_value: depicted_by "Ot in Fig. 1 of https://www.researchgate.net/profile/Stoyan-Stoyanov-16/publication/337812291_Cranial_variability_and_sexual_dimorphism_of_golden_jackal_in_Bulgaria/links/5deb763892851c836468e9cb/Cranial-variability-and-sexual-dimorphism-of-golden-jackal-in-Bulgaria.pdf" xsd:string @@ -221513,7 +221511,7 @@ intersection_of: UBERON:4200133 ! crest intersection_of: part_of UBERON:0001676 ! occipital bone intersection_of: part_of UBERON:0001678 ! temporal bone relationship: dc-contributor https://orcid.org/0000-0001-8415-4848 -relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 +relationship: dc-contributor https://orcid.org/0000-0003-2699-3066 ! Meghan Balk property_value: term_tracker_item "https://github.com/obophenotype/uberon/issues/2882" xsd:anyURI [Term] @@ -221521,14 +221519,14 @@ id: UBERON:8000000 name: first instar larva stage def: "The first stage of instar larva stage." [IDOMAL:0000656] is_a: UBERON:0004730 ! instar larval stage -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000001 name: second instar larva stage def: "The second stage of instar larva stage." [IDOMAL:0000657] is_a: UBERON:0004730 ! instar larval stage -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000002 @@ -221536,7 +221534,7 @@ name: third instar larva stage def: "The third stage of instar larva stage." [IDOMAL:0000658] synonym: "third instar larva" EXACT [] is_a: UBERON:0004730 ! instar larval stage -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000003 @@ -221544,14 +221542,14 @@ name: fourth instar larva stage def: "The fourth stage of instar larva stage." [IDOMAL:0000659] synonym: "fourth instar larva" EXACT [] is_a: UBERON:0004730 ! instar larval stage -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000004 name: central retina def: "Region of retina around the fovea that extends approximately for 6 mm. Central retina is considerably thick due to increased density of photoreceptors, particularly cones and their associated bipolar and ganglion cells." [https://webvision.med.utah.edu/book/part-i-foundations/simple-anatomy-of-the-retina/] is_a: UBERON:0000481 ! multi-tissue structure -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky relationship: part_of UBERON:0000966 ! retina [Term] @@ -221562,7 +221560,7 @@ synonym: "Henle fiber layer" EXACT [] synonym: "HFL" EXACT [] synonym: "nerve fiber layer of Henle" EXACT [] is_a: UBERON:0022303 ! nervous system cell part layer -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky relationship: part_of UBERON:0000966 ! retina [Term] @@ -221572,7 +221570,7 @@ def: "Left part of the organism dorsal to a horizontal plane and bounded on one is_a: UBERON:0001137 ! dorsum intersection_of: UBERON:0001137 ! dorsum intersection_of: in_left_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000007 @@ -221581,14 +221579,14 @@ def: "Right part of the organism dorsal to a horizontal plane and bounded on one is_a: UBERON:0001137 ! dorsum intersection_of: UBERON:0001137 ! dorsum intersection_of: in_right_side_of UBERON:0000468 ! multicellular organism -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky [Term] id: UBERON:8000008 name: cementocyte lacuna def: "The small cavity within the cellular cementum that is occupied by a cementocyte cell body." [MP:0030555, PMID:27029548] is_a: UBERON:0002553 ! anatomical cavity -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky relationship: part_of UBERON:0001753 ! cementum [Term] @@ -221597,7 +221595,7 @@ name: Purkinje fiber network def: "A collection of Purkinje fibers that receives signals from the right and left bundle branches and innervates the ventricular cardiac muscle. The Purkinje fiber network creates synchronized contractions of the heart ventricles." [PMID:26786210] synonym: "Purkinje fibre network" EXACT [PMID:26786210] is_a: UBERON:0010131 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! conducting tissue of heart -relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 +relationship: dc-contributor https://orcid.org/0000-0001-5208-3432 ! Nicole Vasilevsky relationship: has_part UBERON:0002354 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! cardiac Purkinje fiber relationship: part_of UBERON:0004146 {source="https://github.com/obophenotype/uberon/issues/1785", source="https://orcid.org/0000-0001-5208-3432", source="https://orcid.org/0000-0002-9791-0064"} ! His-Purkinje system @@ -221684,7 +221682,7 @@ xref: FMA:24757 is_a: UBERON:0000014 ! zone of skin intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000403 ! scalp -relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 +relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 ! Bonita R Lam [Term] id: UBERON:8300001 @@ -221693,7 +221691,7 @@ def: "A forelimb that is on the right side of a pectoral complex." [UBERONREF:00 xref: FMA:7185 intersection_of: UBERON:0002102 ! forelimb intersection_of: in_right_side_of UBERON:0010708 ! pectoral complex -relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 +relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 ! Bonita R Lam property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -221703,7 +221701,7 @@ def: "A forelimb that is on the left side of a pectoral complex." [UBERONREF:000 xref: FMA:7186 intersection_of: UBERON:0002102 ! forelimb intersection_of: in_left_side_of UBERON:0010708 ! pectoral complex -relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 +relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 ! Bonita R Lam property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -221713,7 +221711,7 @@ def: "A hindlimb that is on the right side of a pelvic complex." [UBERONREF:0000 xref: FMA:7187 intersection_of: UBERON:0002103 ! hindlimb intersection_of: in_right_side_of UBERON:0010709 ! pelvic complex -relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 +relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 ! Bonita R Lam property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -221723,7 +221721,7 @@ def: "A hindlimb that is on the left side of a pelvic complex." [UBERONREF:00000 xref: FMA:7188 intersection_of: UBERON:0002103 ! hindlimb intersection_of: in_left_side_of UBERON:0010709 ! pelvic complex -relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 +relationship: dc-contributor https://orcid.org/0000-0001-9897-3238 ! Bonita R Lam property_value: implements_design_pattern "https://github.com/obophenotype/uberon/wiki/Modeling-paired-structures-Design-Pattern" xsd:anyURI [Term] @@ -221733,7 +221731,7 @@ def: "The region of the hepatic acinus that is closest to the arterial blood sup synonym: "hepatic acinus periportal zone" EXACT [PMID:28126520] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400006 {xref="PMID:28126520"} ! liver lobule periportal region relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221748,7 +221746,7 @@ synonym: "hepatic acinus pericentral zone" EXACT [PMID:28126520] synonym: "hepatic acinus perivenous zone" EXACT [PMID:28126520] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400007 {xref="PMID:28126520"} ! liver lobule centrilobular region relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221763,7 +221761,7 @@ is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:8400001 ! hepatic acinus zone 1 relationship: adjacent_to UBERON:8400002 ! hepatic acinus zone 3 -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400008 {xref="PMID:28126520"} ! liver lobule midzonal region relationship: part_of UBERON:0001172 ! hepatic acinus relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221775,7 +221773,7 @@ name: metabolic zone of liver def: "Any of the metabolic zones found in the liver. Liver tissue is heterogenous at the level of morphometry and histochemistry. This heterogeneity is linked to the position of a cell within the functional unit of the tissue, which, in turn, is related to the blood supply: cells located in the upstream zone differ from those in the downstream zone with respect to subcellular structures, key enzymes, translocators, and receptors and, therefore, have different metabolic capacities. This is the basis for 'metabolic zonation', a concept first proposed in mammals for carbohydrate metabolism and later expanded to include amino acid and ammonia metabolism, xenobiotic metabolism, protective metabolism, and formation of plasma proteins." [DOI:10.1016/S0968-0004(78)91764-4, PMID:8839925] synonym: "hepatic acinus metabolic zone" EXACT [PMID:8839925] is_a: UBERON:0000063 ! organ subunit -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: part_of UBERON:0002107 ! liver relationship: present_in_taxon NCBITaxon:40674 ! Mammalia creation_date: 2020-09-29T15:45:36Z @@ -221788,7 +221786,7 @@ synonym: "hepatic acinus zone 1" RELATED [PMID:28126520] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0001279 ! portal triad -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400001 {xref="PMID:28126520"} ! hepatic acinus zone 1 relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221802,7 +221800,7 @@ synonym: "hepatic acinus zone 3" RELATED [PMID:28126520] is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0006841 ! central vein of liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400002 {xref="PMID:28126520"} ! hepatic acinus zone 3 relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221817,7 +221815,7 @@ is_a: UBERON:0000063 ! organ subunit is_a: UBERON:8400005 ! metabolic zone of liver relationship: adjacent_to UBERON:0001279 ! portal triad relationship: adjacent_to UBERON:0006841 ! central vein of liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays relationship: overlaps UBERON:8400003 {xref="PMID:28126520"} ! hepatic acinus zone 2 relationship: part_of UBERON:0004647 ! liver lobule relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221831,7 +221829,7 @@ synonym: "serosa of liver" EXACT [FMA:15811] synonym: "tunica serosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/serosa+of+liver] {synonymtypedef="LATIN"} intersection_of: UBERON:0000042 ! serous membrane intersection_of: part_of UBERON:0002107 ! liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays [Term] id: UBERON:8400023 @@ -221844,7 +221842,7 @@ synonym: "tela subserosa (hepar)" EXACT [FMA:15821] synonym: "tela subserosa hepatis" EXACT [https://medical-dictionary.thefreedictionary.com/subserosa+of+liver] intersection_of: UBERON:0012375 ! subserosa intersection_of: part_of UBERON:0002107 ! liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays [Term] id: UBERON:8400024 @@ -221856,7 +221854,7 @@ synonym: "subcapsular tissue of liver" EXACT [PMID:30992875] intersection_of: UBERON:0000353 ! parenchyma intersection_of: adjacent_to UBERON:0016479 ! capsule of liver intersection_of: part_of UBERON:0002107 ! liver -relationship: dc-contributor https://orcid.org/0000-0003-2034-601X +relationship: dc-contributor https://orcid.org/0000-0003-2034-601X ! Maria C Keays [Term] id: UBERON:8410000 @@ -221884,7 +221882,7 @@ subset: location_grouping synonym: "venule of small intestine" EXACT [] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001213 ! intestinal villus -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410002 @@ -221894,7 +221892,7 @@ subset: location_grouping synonym: "lymphatic vessel of small intestine" EXACT [] intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0002108 ! small intestine -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410003 @@ -221902,7 +221900,7 @@ name: ductal plate def: "In human, ductal plate is a double-layered cylindrical structure of bile duct epithelium that surrounds the portal ramifications by the eighth gestational week. After approximately the 12th gestational week, remodelling of ductal plate begins, and maturity is attained by the end of gestation or early postnatal period." [http://orcid.org/0000-0002-7073-9172, PMID:28515578] subset: added_for_HCA is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: existence_ends_during UBERON:0007220 ! late embryonic stage relationship: existence_starts_during UBERON:0000068 ! embryo stage relationship: has_part UBERON:0004820 ! bile duct epithelium @@ -221921,7 +221919,7 @@ synonym: "arteriole of villus of small intestine" EXACT [] synonym: "small intestine villus arteriole" EXACT [] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001213 ! intestinal villus -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410005 @@ -221932,7 +221930,7 @@ synonym: "glandular epithelium of anal transition zone" EXACT [] synonym: "glandular epithelium of the anal transition zone" EXACT [] is_a: UBERON:0006799 ! glandular epithelium is_a: UBERON:0015716 ! anal canal epithelium -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410006 @@ -221941,7 +221939,7 @@ def: "Submucous nerve plexus that is located in the anorectum." [http://orcid.or synonym: "anorectum submucous nerve plexus" EXACT [] intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410007 @@ -221950,7 +221948,7 @@ def: "Myenteric nerve plexus that is located in the anorectum." [http://orcid.or synonym: "anorectum myenteric nerve plexus" EXACT [] intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410008 @@ -221959,7 +221957,7 @@ def: "A venule that is located in the anorectum." [http://orcid.org/0000-0003-34 synonym: "anorectum venule" EXACT [] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410009 @@ -221968,7 +221966,7 @@ def: "An arteriole that is located in the anorectum." [http://orcid.org/0000-000 synonym: "anorectum arteriole" EXACT [] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410010 @@ -221981,7 +221979,7 @@ synonym: "fimbriae of uterine tube" EXACT PLURAL [] xref: FMA:18308 xref: http://orcid.org/0000-0001-7505-5418 is_a: UBERON:0013515 ! subdivision of oviduct -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0003889 ! fallopian tube relationship: present_in_taxon NCBITaxon:40674 ! Mammalia @@ -221993,7 +221991,7 @@ synonym: "myenteric nerve plexus of appendix vermiformis" EXACT [] synonym: "myenteric nerve plexus of vermiform appendix" EXACT [] intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410012 @@ -222003,7 +222001,7 @@ synonym: "submucous nerve plexus of appendix vermiformis" EXACT [] synonym: "submucous nerve plexus of vermiform appendix" EXACT [] intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410013 @@ -222012,7 +222010,7 @@ def: "A valve in an afferent lymphatic vessel. It manages the flow of lymphatic synonym: "valve of afferent lymphatic vessel" EXACT [] intersection_of: UBERON:0034949 ! lymphatic valve intersection_of: part_of UBERON:0010396 ! afferent lymphatic vessel -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410014 @@ -222021,7 +222019,7 @@ def: "A valve in an efferent lymphatic vessel. It manages the flow of lymphatic synonym: "valve of efferent lymphatic vessel" EXACT [] intersection_of: UBERON:0034949 ! lymphatic valve intersection_of: part_of UBERON:0010397 ! efferent lymphatic vessel -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410015 @@ -222029,7 +222027,7 @@ name: arteriole of colon def: "An arteriole located in the colon." [http://orcid.org/0000-0003-3440-1876, http://orcid.org/0000-0003-4183-8865] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410016 @@ -222041,7 +222039,7 @@ synonym: "sigmoid junction" BROAD [] intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0001158 ! descending colon intersection_of: connects UBERON:0001159 ! sigmoid colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0000168 ! proximal-distal subdivision of colon [Term] @@ -222052,7 +222050,7 @@ xref: FMA:15394 intersection_of: UBERON:0002017 ! portal vein intersection_of: drains UBERON:0001158 ! descending colon intersection_of: tributary_of UBERON:0001215 ! inferior mesenteric vein -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410018 @@ -222062,7 +222060,7 @@ xref: FMA:15407 intersection_of: UBERON:0002017 ! portal vein intersection_of: drains UBERON:0001156 ! ascending colon intersection_of: tributary_of UBERON:0001138 ! superior mesenteric vein -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410019 @@ -222072,7 +222070,7 @@ synonym: "jejunoileal junction" EXACT [] intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0002115 ! jejunum intersection_of: connects UBERON:0002116 ! ileum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0002108 ! small intestine [Term] @@ -222083,7 +222081,7 @@ synonym: "venule of vermiform appendix" EXACT [] synonym: "vermiform appendix venule" EXACT [] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410021 @@ -222106,7 +222104,7 @@ def: "The first branch of the inferior mesenteric artery (IMA) is the left colic xref: FMA:14826 is_a: UBERON:0001637 ! artery relationship: branching_part_of UBERON:0001183 ! inferior mesenteric artery -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: supplies UBERON:0001157 ! transverse colon relationship: supplies UBERON:0001158 ! descending colon @@ -222126,7 +222124,7 @@ synonym: "junction of intestine" EXACT [] intersection_of: UBERON:0007651 ! anatomical junction intersection_of: connects UBERON:0004921 ! subdivision of digestive tract intersection_of: part_of UBERON:0000160 ! intestine -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410025 @@ -222136,7 +222134,7 @@ subset: added_for_HCA synonym: "prostate transition zone" EXACT [] synonym: "transition zone of human prostate" NARROW [] is_a: UBERON:0034944 ! zone of organ -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens @@ -222148,7 +222146,7 @@ subset: added_for_HCA synonym: "peripheral zone of human prostate" NARROW [] synonym: "prostate peripheral zone" EXACT [] is_a: UBERON:0034944 ! zone of organ -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0002367 ! prostate gland relationship: present_in_taxon NCBITaxon:9606 {source="PMID:29038334"} ! Homo sapiens @@ -222173,7 +222171,7 @@ synonym: "arteriole of vermiform appendix" EXACT [] synonym: "vermiform appendix arteriole" EXACT [] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410029 @@ -222183,7 +222181,7 @@ synonym: "lymphatic capillary of appendix vermiformis" EXACT [] synonym: "lymphatic capillary of vermiform appendix" EXACT [] intersection_of: UBERON:0006842 ! lymphatic capillary intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410030 @@ -222193,7 +222191,7 @@ synonym: "lymphatic vessel of appendix vermiformis" EXACT [] synonym: "lymphatic vessel of vermiform appendix" EXACT [] intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410031 @@ -222203,7 +222201,7 @@ synonym: "muscularis mucosae of appendix vermiformis" EXACT [] synonym: "muscularis mucosae of vermiform appendix" EXACT [] intersection_of: UBERON:0006676 ! muscularis mucosa intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410032 @@ -222213,7 +222211,7 @@ synonym: "lymph node trabecular sinus" EXACT [] intersection_of: UBERON:0000464 ! anatomical space intersection_of: adjacent_to UBERON:0002195 ! trabecula of lymph node intersection_of: part_of UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410033 @@ -222223,7 +222221,7 @@ synonym: "hilar vein of lymph node" EXACT [] synonym: "vein of lymph node" EXACT [] intersection_of: UBERON:0001638 ! vein intersection_of: drains UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410034 @@ -222242,7 +222240,7 @@ synonym: "arteriole of medulla of lymph node" EXACT [] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0002007 ! medulla of lymph node relationship: branching_part_of UBERON:8410034 ! lymph node artery -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410036 @@ -222251,7 +222249,7 @@ def: "Medullary venules are a continuation of high endothelial venules which con synonym: "venule of medulla of lymph node" EXACT [] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0002007 ! medulla of lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410037 @@ -222261,7 +222259,7 @@ synonym: "HEV" BROAD ABBREVIATION [] xref: BTO:0004528 xref: NCIT:C32739 is_a: UBERON:0035428 ! postcapillary venule -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410038 @@ -222270,7 +222268,7 @@ def: "A high endothelial venule that is part of a of lymph node." [http://orcid. synonym: "lymph node high endothelial venule" EXACT [] intersection_of: UBERON:8410037 ! high endothelial venule intersection_of: part_of UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410039 @@ -222281,7 +222279,7 @@ synonym: "high endothelial venule of appendix vermiformis" EXACT [] synonym: "high endothelial venule of vermiform appendix" EXACT [] intersection_of: UBERON:8410037 ! high endothelial venule intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410040 @@ -222291,7 +222289,7 @@ synonym: "high endothelial venule of Peyer's patch" BROAD [] synonym: "high endothelial venule of Peyer's patch of small intestine" EXACT [] intersection_of: UBERON:8410037 ! high endothelial venule intersection_of: part_of UBERON:0003454 ! small intestine Peyer's patch -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410041 @@ -222300,7 +222298,7 @@ def: "A venule that is part of a lymph node." [http://orcid.org/0000-0003-3440-1 synonym: "lymph node venule" EXACT [] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410042 @@ -222309,7 +222307,7 @@ def: "An arteriole that is part of a lymph node." [http://orcid.org/0000-0003-34 synonym: "lymph node arteriole" EXACT [] intersection_of: UBERON:0001980 ! arteriole intersection_of: part_of UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410043 @@ -222321,7 +222319,7 @@ synonym: "submucosal bronchial gland" EXACT [] synonym: "submucosal bronchus gland" EXACT [] intersection_of: UBERON:0011148 ! submucosal gland intersection_of: part_of UBERON:0002185 ! bronchus -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410044 @@ -222331,7 +222329,7 @@ synonym: "vein of appendix vermiformis" EXACT [] synonym: "vein of vermiform appendix" EXACT [] intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410045 @@ -222341,7 +222339,7 @@ synonym: "artery of appendix vermiformis" EXACT [] synonym: "artery of vermiform appendix" EXACT [] intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410046 @@ -222352,7 +222350,7 @@ synonym: "smooth muscle circular layer of appendix vermiformis" EXACT [] synonym: "smooth muscle circular layer of vermiform appendix" EXACT [] intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410047 @@ -222363,7 +222361,7 @@ synonym: "smooth muscle longitudinal layer of appendix vermiformis" EXACT [] synonym: "smooth muscle longitudinal layer of vermiform appendix" EXACT [] intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0001154 ! vermiform appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410048 @@ -222371,7 +222369,7 @@ name: venule of colon def: "A venule located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] intersection_of: UBERON:0001979 ! venule intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410049 @@ -222386,7 +222384,7 @@ synonym: "serosal nerve fibre of appendix vermiformis" EXACT [] synonym: "serosal nerve fibre of vermiform appendix" EXACT [] intersection_of: UBERON:0006134 ! nerve fiber intersection_of: part_of UBERON:0012498 ! serosa of appendix -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410050 @@ -222397,7 +222395,7 @@ intersection_of: UBERON:0004921 ! subdivision of digestive tract intersection_of: has_part UBERON:0000159 ! anal canal intersection_of: has_part UBERON:0001052 ! rectum intersection_of: has_part UBERON:0001245 ! anus -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0000059 ! large intestine relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: editor_note "The anatomy, pathology and medical community considers the anus to be part of the large intestine, and supports the use of 'anorectum' to include rectum, anal canal and anus. Although a few resources seem to only include the distal part of the rectum in 'anorectum', this UBERON grouping term is meant to refer more broadly to the whole of rectum." xsd:string @@ -222409,7 +222407,7 @@ name: lymphatic vessel of colon def: "A lymphatic vessel located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410052 @@ -222419,7 +222417,7 @@ synonym: "germinal center light zone" BROAD [] synonym: "light zone of germinal center" BROAD [] synonym: "light zone of lymph node germinal center" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0009039 ! lymph node germinal center [Term] @@ -222430,7 +222428,7 @@ synonym: "dark zone of germinal center" BROAD [] synonym: "dark zone of lymph node germinal center" EXACT [] synonym: "germinal center dark zone" BROAD [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0009039 ! lymph node germinal center [Term] @@ -222439,7 +222437,7 @@ name: lymphatic capillary of colon def: "A lymphatic capillary located in the colon." [https://orcid.org/0000-0003-3440-1876, https://orcid.org/0000-0003-4183-8865] intersection_of: UBERON:0006842 ! lymphatic capillary intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410055 @@ -222447,7 +222445,7 @@ name: lymphatic capillary of anorectum def: "A lymphatic capillary located in the anorectum." [https://orcid.org/0000-0003-3440-1876] intersection_of: UBERON:0006842 ! lymphatic capillary intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410056 @@ -222456,7 +222454,7 @@ def: "A capillary that is part of the anorectum." [http://orcid.org/0000-0003-34 synonym: "blood vessel capillary of anorectum" EXACT [] intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:8410050 ! anorectum -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410057 @@ -222465,7 +222463,7 @@ def: "A capillary that is part of the colon." [http://orcid.org/0000-0003-3440-1 synonym: "blood vessel capillary of colon" EXACT [] intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410058 @@ -222473,7 +222471,7 @@ name: myenteric nerve plexus of colon def: "Myenteric nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410059 @@ -222481,7 +222479,7 @@ name: submucous nerve plexus of colon def: "Submucous nerve plexus that is located in the colon." [http://orcid.org/0000-0003-3440-1876] intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0001155 ! colon -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410060 @@ -222491,7 +222489,7 @@ synonym: "smooth muscle circular layer of colon" EXACT [] intersection_of: UBERON:0012368 ! circular muscle layer of muscular coat intersection_of: part_of UBERON:0001155 ! colon intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410061 @@ -222501,14 +222499,14 @@ synonym: "smooth muscle longitudinal layer of colon" EXACT [] intersection_of: UBERON:0012369 ! longitudinal muscle layer of muscular coat intersection_of: part_of UBERON:0001155 ! colon intersection_of: part_of UBERON:0004220 ! large intestine smooth muscle -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410062 name: parasympathetic cholinergic nerve def: "A parasympathetic nerve that releases acetylcholine." [PMID:24676230] is_a: UBERON:0004293 ! parasympathetic nerve -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: overlaps CL:0000108 ! cholinergic neuron relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: seeAlso "https://github.com/obophenotype/uberon/issues/2104" xsd:string @@ -222519,7 +222517,7 @@ name: myenteric nerve plexus of small intestine def: "Myenteric nerve plexus that is part of the small intestine." [http://orcid.org/0000-0003-3440-1876] intersection_of: UBERON:0002439 ! myenteric nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410064 @@ -222527,7 +222525,7 @@ name: submucous nerve plexus of small intestine def: "Submucous nerve plexus that is located in the small intestine." [http://orcid.org/0000-0003-3440-1876] intersection_of: UBERON:0005304 ! submucous nerve plexus intersection_of: part_of UBERON:0002108 ! small intestine -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia [Term] id: UBERON:8410065 @@ -222537,7 +222535,7 @@ synonym: "lymph node marginal zone" BROAD [] synonym: "marginal zone of lymph node" BROAD [] synonym: "marginal zone of lymph node follicle" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0000029 ! lymph node [Term] @@ -222545,7 +222543,7 @@ id: UBERON:8410066 name: lymph node paracortex def: "The lymph node paracortex is the middle layer of the lymph node and is mostly populated by T cells and dendritic cells. The paracortex also contains specialised blood vessels called high endothelial venules which allow lymphocytes to enter the node." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, https://www.immunology.org/public-information/bitesized-immunology/organs-and-tissues/lymph-node] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0010417 ! lymph node T cell domain [Term] @@ -222554,7 +222552,7 @@ name: lymph node interfollicular cortex def: "Follicules in the lymph node are surrounded and separated by the interfollicular cortex. Together with the lymph node follicle, the interfollicular cortex of the lymph node lobule make up the superficial cortex of the lymph node. Capillaries empty into the high endothelial venules located in the interfollicular cortex. The interfollicular cortex also serves as transit corriders for lymphocytes migrating between the B and T cell areas." [http://orcid.org/0000-0001-9990-8331, http://orcid.org/0000-0003-4183-8865, PMID:17067937] synonym: "interfollicular cortex of lymph node" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0010417 ! lymph node T cell domain [Term] @@ -222566,7 +222564,7 @@ synonym: "blood vessel capillary of small intestine" EXACT [] synonym: "small intestine capillary" EXACT [] intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0002108 ! small intestine -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia property_value: dcterms-date "2021-12-21T15:14:31Z" xsd:dateTime [Term] @@ -222576,7 +222574,7 @@ def: "Lymphoid tissue found in some birds and similar, but not identical, to mam synonym: "avian lymph node" RELATED [] synonym: "avian lymphoid nodule" EXACT [] is_a: UBERON:0001744 ! lymphoid tissue -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: in_taxon NCBITaxon:8782 ! Aves property_value: dcterms-date "2022-01-24T16:47:47Z" xsd:dateTime @@ -222590,7 +222588,7 @@ synonym: "levatores costarum muscles" EXACT [] synonym: "musculi levatores costarum" EXACT LATIN [] xref: FMA:71312 is_a: UBERON:0002426 ! chest muscle -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: has_muscle_insertion UBERON:0002228 ! rib relationship: has_muscle_origin UBERON:0001077 ! transverse process of vertebra relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens @@ -222605,7 +222603,7 @@ synonym: "floor of capsule of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node ceiling" EXACT [] is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0002194 ! capsule of lymph node relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2022-02-22T17:04:49Z" xsd:dateTime @@ -222619,7 +222617,7 @@ synonym: "floor of subcapsular sinus of lymph node" EXACT [] synonym: "subcapsular sinus of lymph node floor" EXACT [] is_a: UBERON:0000064 ! organ part relationship: adjacent_to UBERON:0005463 ! subcapsular sinus of lymph node -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:0002006 ! cortex of lymph node property_value: dcterms-date "2022-02-22T17:16:40Z" xsd:dateTime @@ -222646,7 +222644,7 @@ synonym: "lymphatic labyrinth" RELATED [] synonym: "paracortical sinus" BROAD [] synonym: "peripheral sinus" RELATED [] is_a: UBERON:0004111 ! anatomical conduit -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2022-02-24T11:30:26Z" xsd:dateTime @@ -222657,7 +222655,7 @@ name: lymph node paracortical cord def: "Lymph node paracortical parenchyma containing dense networks of T cells, B cells, fibroblastic reticular cells, and dendritic cells." [https://orcid.org/0000-0001-7655-4833, PMID:17067937, PMID:49306] synonym: "paracortical cord" BROAD [] is_a: UBERON:0000353 ! parenchyma -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: part_of UBERON:8410066 ! lymph node paracortex relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2022-02-24T11:40:24Z" xsd:dateTime @@ -222674,7 +222672,7 @@ synonym: "glands of Luschka" EXACT [] synonym: "glomus body" EXACT [PMID:30799440] synonym: "Luschka's gland" EXACT [WikipediaVersioned:Coccygeal_glomus&oldid=1019065130] is_a: UBERON:0010000 ! multicellular anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia property_value: dcterms-date "2022-02-24T14:12:33Z" xsd:dateTime [Term] @@ -222686,7 +222684,7 @@ synonym: "submucosal gland of respiratory tract" EXACT [] xref: EFO:0010666 intersection_of: UBERON:0011148 ! submucosal gland intersection_of: part_of UBERON:0000065 ! respiratory tract -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia property_value: dcterms-date "2022-03-24T14:21:59Z" xsd:dateTime [Term] @@ -222697,7 +222695,7 @@ comment: This term ('right lymphatic duct') would not need a 'left' counterpart; synonym: "ductus lymphaticus dexter" EXACT LATIN [] xref: FMA:5832 is_a: UBERON:0001473 ! lymphatic vessel -relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 +relationship: dc-contributor https://orcid.org/0000-0002-2825-0621 ! Paola Roncaglia relationship: present_in_taxon NCBITaxon:9606 ! Homo sapiens property_value: dcterms-date "2022-03-25T10:41:22Z" xsd:dateTime @@ -222739,7 +222737,7 @@ def: "Hair that grows on the scalp." [PMID:3126903] synonym: "hair" BROAD [PMID:30783333] intersection_of: UBERON:0001037 ! strand of hair intersection_of: part_of UBERON:0000403 ! scalp -relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 +relationship: dc-contributor https://orcid.org/0000-0001-8314-2140 ! Raymund Stefancsik [Term] id: UBERON:8440000 @@ -223187,7 +223185,7 @@ name: second visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is rostral to area 17, caudal to area 19 and also abuts PPc and area 20a." [PMID:30632160] synonym: "area 18 (sensu Mustela putorius furo)" EXACT [PMID:30632160] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223199,7 +223197,7 @@ name: third visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret located rostral to area 18 and caudal to area 21." [PMID:11884356, PMID:11884357] synonym: "area 19 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223211,7 +223209,7 @@ name: fourth visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is caudal to the suprasylvian visual areas and rostral to area 19." [PMID:11884357] synonym: "area 21 (sensu Mustela putorius furo)" EXACT [PMID:11884357] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223223,7 +223221,7 @@ name: temporal visual area a (sensu Mustela putorius furo) def: "A visual area in the ferret that is posterior to area 20b and lies lateral to areas 17, 18, and 19." [PMID:15054048] synonym: "area 20a (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223235,7 +223233,7 @@ name: temporal visual area b (sensu Mustela putorius furo) def: "A visual area in the ferret that is posterior to area PS and anterior to 20a." [PMID:15054048] synonym: "area 20b (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223248,7 +223246,7 @@ def: "A multimodal area of the ferret involved in vision and somatosensation tha synonym: "posterior parietal cortex, rostral part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPr (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223269,7 +223267,7 @@ def: "A visual area in the ferret that lies between the medial wall of the hemi synonym: "posterior parietal cortex, caudal part (sensu Mustela putorius furo)" EXACT [DOI:10.1007/978-3-319-76626-3] synonym: "PPc (sensu Mustela putorius furo)" EXACT [PMID:12427679] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223281,7 +223279,7 @@ name: anteromedial lateral suprasylvian visual area (sensu Mustela putorius furo def: "A visual area in the ferret that lies medial to the fundus in the suprasylvian sulcus, posterior to the MRSS and anterior to the PMLS." [PMID:18282308, PMID:20853515] synonym: "AMLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223293,7 +223291,7 @@ name: anterolateral lateral suprasylvian visual area (sensu Mustela putorius fur def: "A visual area in the ferret that lies on the lateral bank of the suprasylvian sulcus, posterior to SIII, anterior to area PLLS and medial to A1." [PMID:18282308, PMID:20853515] synonym: "ALLS (sensu Mustela putorius furo)" EXACT [PMID:18282308, PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223310,7 +223308,7 @@ synonym: "SSY (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "Ssy (sensu Mustela putorius furo)" EXACT [PMID:15892103] synonym: "suprasylvian sulcal visual area (sensu Mustela putorius furo)" EXACT [PMID:15892103] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223322,7 +223320,7 @@ name: posterolateral lateral suprasylvian visual area (sensu Mustela putorius fu def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus posterior to ALLS, anteriomedial to DLS and lateral to PMLS." [PMID:20853515] synonym: "PLLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223334,7 +223332,7 @@ name: dorsal lateral suprasylvian visual cortical area (sensu Mustela putorius f def: "A visual area in the ferret located in the lateral bank of the suprasylvian sulcus anterior to VLS and posterior to PLLS." [PMID:20853515] synonym: "DLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223346,7 +223344,7 @@ name: ventral lateral suprasylvian visual area (sensu Mustela putorius furo) def: "A visual area in the ferret located in the medial bank of the suprasylvian sulvus lateral to area PMLS." [PMID:20853515] synonym: "VLS (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223358,7 +223356,7 @@ name: posterior suprasylvian visual cortical area (sensu Mustela putorius furo) def: "A visual area in the ferret that is lateral to the occipital visual areas (area 17, 18, 19 and 21), medial to perirhinal cortex and anterior to area 20b." [PMID:15054048] synonym: "PS (sensu Mustela putorius furo)" EXACT [PMID:15054048] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0000411 ! visual cortex @@ -223370,7 +223368,7 @@ name: anterior ectosylvian visual area (sensu Mustela putorius furo) def: "A multimodal area in the ferret responsive to visual, somatic, and auditory stimuli. The anterior border of AEV is coincident with the anterior portion of the ectosylvian gyrus containing higher order somatosensory cortical areas and the posterior border abuts higher order auditory cortical areas." [PMID:16101752] synonym: "AEV (sensu Mustela putorius furo)" EXACT [PMID:16101752] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223385,7 +223383,7 @@ synonym: "SPLC (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "splenial sulcal cortex (sensu Mustela putorius furo)" EXACT [PMID:20853515] synonym: "SVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223396,7 +223394,7 @@ name: cingulate visual area (sensu Mustela putorius furo) def: "A visual area of the ferret located in the fundus of the splenial sulcus medial to SVA." [PMID:20853515] synonym: "CVA (sensu Mustela putorius furo)" EXACT [PMID:20853515] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223407,7 +223405,7 @@ name: A lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "A major laminae of the lateral geniculate nucleus of the ferret receiving crossed retinal inputs, located medial to the C laminae and lateral to the A1 and P laminae." [PMID:7309920] synonym: "A (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223418,7 +223416,7 @@ name: A1 lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "A major laminae of the lateral geniculate nucleus of the ferret receiving uncrossed retinal inputs, located medial to the C and A laminae (Linden, Guillery & Cucchiaro, 1981)" [PMID:7309920] synonym: "A1(sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223429,7 +223427,7 @@ name: C lamina of the lateral geniculate nucleus (sensu Mustela putorius furo) def: "The most lateral laminae of the LGN of the ferret. The C laminae includes the C lamina, which is the innermost layer, followed by C1, C2, and C3 being the outermost lamina." [PMID:7309920] synonym: "C (sensu Mustela putorius furo)" EXACT [PMID:7309920] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223440,7 +223438,7 @@ name: Perigeniculate lamina of the lateral geniculate nucleus (sensu Mustela put def: "A lamina of the LGN in the ferret located medial to the A lamina in the rostral regions of the visual thalamus ((Linden, Guillery & Cucchiaro, 1981; Dell, Innocenti, Hilgetag, & Manger, 2019)." [PMID:30632160, PMID:7309920] synonym: "P (sensu Mustela putorius furo)" EXACT [PMID:30632160, PMID:7309920] is_a: UBERON:0035014 ! functional part of brain -relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 +relationship: dc-contributor https://orcid.org/0000-0002-1112-5832 ! Stephen D Van Hooser relationship: dc-contributor https://orcid.org/0000-0002-5480-427X relationship: in_taxon NCBITaxon:9669 ! Mustela putorius furo relationship: part_of UBERON:0002104 ! visual system @@ -223521,7 +223519,7 @@ id: UBERON:8450001 name: egg follicle def: "An individual reproductive unit containing a single oocyte and one or several layers of support cells (Armstrong et al., 2020)." [DOI:10.1530/REP-18-0593] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 +relationship: dc-contributor https://orcid.org/0000-0002-6095-8718 ! Damien Goutte-Gattat relationship: part_of UBERON:0000992 ! ovary property_value: dcterms-date "2022-04-19T11:08:10Z" xsd:dateTime property_value: seeAlso "https://github.com/obophenotype/uberon/issues/476" xsd:anyURI @@ -223541,7 +223539,7 @@ name: placental blood def: "Blood located in the placenta." [http://orcid.org/0000-0001-6595-0902, https://www.ncbi.nlm.nih.gov/books/NBK53254/] intersection_of: UBERON:0000178 ! blood intersection_of: located_in UBERON:0001987 ! placenta -relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 +relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 ! B Varner property_value: dcterms-date "2022-04-04T11:06:09Z" xsd:dateTime [Term] @@ -223549,7 +223547,7 @@ id: UBERON:8470001 name: sublumbar lymph node def: "A lymph node with a lymph center located within the caudal abdomen and pelvis, on the ventral side of the lumbar region. Includes the medial iliac, internal iliac (previously termed hypogastric) and sacral lymph nodes." [https://orcid.org/0000-0002-0819-0473, NCIT:C77655, PMID:32655159] is_a: UBERON:0000029 ! lymph node -relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 +relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 ! B Varner property_value: dcterms-date "2022-05-26T11:59:51Z" xsd:dateTime [Term] @@ -223559,7 +223557,7 @@ def: "A muscular trabecula in the right ventricle of the heart that connects the comment: The morphology and structure of the septomarginal trabecula varies in different species. In humans, the septomarginal trabecula connects the interventricular septum with the anterior wall of the right ventricle at the base of the anterior papillary muscle. It is also present in non-human mammals where it stretches between the bases of the muscles papilaris subarteriosus and magnus. In some instances it carries the continuation of the right bundle branch of the conducting system of the heart. It is constituted of ordinary cardiac myocytes around and in between Purkinje myocytes. {xref="https://doi.org/10.19080/APBIJ.2017.02.555595", xref="PMID:20359929"} synonym: "septomarginal trabecula" EXACT [PMID:22419933] is_a: UBERON:0000440 ! trabecula -relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 +relationship: dc-contributor https://orcid.org/0000-0002-1773-2692 ! B Varner relationship: part_of UBERON:0004151 ! cardiac chamber property_value: dcterms-date "2022-12-13T13:11:03Z" xsd:dateTime @@ -223569,7 +223567,7 @@ name: iliac vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005610 ! iliac vein -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-17T14:34:50Z" xsd:dateTime [Term] @@ -223578,7 +223576,7 @@ name: capillary of brain def: "A capillary that is part of the brain." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001982 ! capillary intersection_of: part_of UBERON:0000955 ! brain -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:28:31Z" xsd:dateTime [Term] @@ -223587,7 +223585,7 @@ name: thoracic aorta smooth muscle tissue def: "A portion of smooth muscle tissue that is part of the thoracic aorta." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0001515 ! thoracic aorta -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:30:54Z" xsd:dateTime [Term] @@ -223596,7 +223594,7 @@ name: iliac artery smooth muscle tissue def: "A portion of smooth muscle tissue that is part of an iliac artery." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0005609 ! iliac artery -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:32:07Z" xsd:dateTime [Term] @@ -223605,7 +223603,7 @@ name: iliac vein endothelium def: "An endothelium that is part of an iliac vein." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:0005610 ! iliac vein -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:33:18Z" xsd:dateTime [Term] @@ -223614,7 +223612,7 @@ name: placental artery endothelium def: "An endothelium that is part of the placental artery." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001986 ! endothelium intersection_of: part_of UBERON:8480007 ! placental artery -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:34:25Z" xsd:dateTime [Term] @@ -223623,7 +223621,7 @@ name: mesenteric lymphatic vessel def: "Lymphatic vessel that is part of the mesentery." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001473 ! lymphatic vessel intersection_of: part_of UBERON:0002095 ! mesentery -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T09:35:29Z" xsd:dateTime [Term] @@ -223632,7 +223630,7 @@ name: placental artery def: "An artery that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001637 ! artery intersection_of: part_of UBERON:0001987 ! placenta -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-24T11:25:24Z" xsd:dateTime [Term] @@ -223641,7 +223639,7 @@ name: placental vein def: "A vein that is part of the placenta." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001638 ! vein intersection_of: part_of UBERON:0001987 ! placenta -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-06-27T09:30:52Z" xsd:dateTime [Term] @@ -223651,7 +223649,7 @@ def: "A tendon that attaches to a semitendinosus." [https://orcid.org/0000-0002- synonym: "semitendinosus tendon" EXACT [FMA:46930] intersection_of: UBERON:0000043 ! tendon intersection_of: attaches_to UBERON:0001375 ! semitendinosus -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-09-15T07:47:19Z" xsd:dateTime [Term] @@ -223659,7 +223657,7 @@ id: UBERON:8480010 name: perianal space def: "An anatomical space located at the level of the anal orifice that is continuous with the ischioanal space laterally and superiorly and extends into the space between the external and internal sphincters." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T10:36:29Z" xsd:dateTime [Term] @@ -223667,7 +223665,7 @@ id: UBERON:8480011 name: deep post-anal space def: "An anatomical space found at the front of the apex of the coccyx that is limited superiorly by the plate of the levator ani muscle and inferiorly by the anococcygeal raphe." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T10:41:02Z" xsd:dateTime [Term] @@ -223675,7 +223673,7 @@ id: UBERON:8480012 name: intersphincteric space def: "An anatomical space located between the internal and external anal sphincters that continues inferiorly into the perianal space and superiorly into the rectum wall." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T10:43:20Z" xsd:dateTime [Term] @@ -223684,7 +223682,7 @@ name: ischiorectal space def: "An anatomical space that extends from the levator ani muscle to the perineum lateral to the anal canal." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] synonym: "ischioanal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T10:46:32Z" xsd:dateTime [Term] @@ -223693,7 +223691,7 @@ name: skin of buttock def: "A zone of skin that is part of the buttock." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0013691 ! buttock -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:05:55Z" xsd:dateTime [Term] @@ -223702,7 +223700,7 @@ name: supra levator space def: "An anatomical space limited superiorly by the peritoneum, laterally by the pelvic wall, medially by the rectal wall, and inferiorly by the levator ani muscle." [https://www.ncbi.nlm.nih.gov/books/NBK535387/] synonym: "pelvic-rectal space" EXACT [https://www.ncbi.nlm.nih.gov/books/NBK535387/] is_a: UBERON:0000464 ! anatomical space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T10:59:37Z" xsd:dateTime [Term] @@ -223711,7 +223709,7 @@ name: perirenal space def: "A retroperitoneal space that lies between the anterior and posterior renal fascia; it is a paired inverted cone shaped of tissue containing the kidney, the proximal portion of the collecting system, renal and perirenal vasculature, perirenal lymphatics, adrenal glands and variable amount of fat." [PMID:24065628] synonym: "perinephric space" EXACT [PMID:28050791] is_a: UBERON:0003693 ! retroperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:02:35Z" xsd:dateTime [Term] @@ -223719,7 +223717,7 @@ id: UBERON:8480017 name: anterior pararenal space def: "A space that is bounded anteriorly by the posterior parietal peritoneum, laterally by the lateroconal fascia and posteriorly by the anterior renal fascia; it contains the pancreatic gland, retroperitoneal segments of the duodenum, ascending and descending colon and the mesenteric root, as well as adipose tissue." [PMID:24065628] is_a: UBERON:0003693 ! retroperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:19:27Z" xsd:dateTime [Term] @@ -223727,7 +223725,7 @@ id: UBERON:8480018 name: posterior pararenal space def: "A space that is bound anteriorly by the posterior renal fascia and posteriorly by the transversalis fascia, and it only contains adipose tissue, lymphatics and blood vessels." [PMID:24065628] is_a: UBERON:0003693 ! retroperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:20:55Z" xsd:dateTime [Term] @@ -223735,7 +223733,7 @@ id: UBERON:8480019 name: perirectal space def: "An extraperitoneal space bounded laterally by the perirectal fascia, posteriorly by the posterior pelvic fascia, and anteriorly by the rectovesical fascia in the male and the rectovaginal fascia in the female." [PMID:26006061] is_a: UBERON:0014456 ! extraperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:22:05Z" xsd:dateTime [Term] @@ -223743,7 +223741,7 @@ id: UBERON:8480020 name: perivesical space def: "An extraperitoneal space circumscribed by the umbilicovesical fascia anterior and laterally, and rectovaginal (in females) or rectovesical (in males) septum posteriorly, it encounters the urachus, obliterated umbilical vessels, urinary bladder and the lower uterine segment or seminal vesicles." [PMID:24065628] is_a: UBERON:0014456 ! extraperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:28:46Z" xsd:dateTime [Term] @@ -223751,7 +223749,7 @@ id: UBERON:8480021 name: prevesical space def: "An extraperitoneal space anterior and lateral to the umbilicovesical fascia, and posterior to the trasversalis fascia. Prevesical space laterally communicates with the properitoneal space of the abdominal wall and flanks; posteroinferiorly it surrounds the lateral walls of the urinary bladder, and anteroinferiorly it forms the retropubic space (the space of Retzius)." [PMID:24065628] is_a: UBERON:0014456 ! extraperitoneal space -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:29:38Z" xsd:dateTime [Term] @@ -223765,7 +223763,7 @@ synonym: "pyriform recess" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "pyriform sinus" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] synonym: "smuggler's fossa" EXACT [https://en.wikipedia.org/wiki/Pyriform_sinus] is_a: UBERON:0002553 ! anatomical cavity -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-07-05T11:30:55Z" xsd:dateTime [Term] @@ -223775,7 +223773,7 @@ def: "A zone of skin that is part of the lateral lumbar region of abdomen." [htt synonym: "skin of flank" EXACT [] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000180 ! lateral lumbar region of abdomen -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:11:43Z" xsd:dateTime [Term] @@ -223784,7 +223782,7 @@ name: skin of sacral region def: "A zone of skin that is part of the sacral region." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0005473 ! sacral region -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:14:27Z" xsd:dateTime [Term] @@ -223793,7 +223791,7 @@ name: skin of clavicle region def: "A zone of skin that is above the clavicle zone in the pectoral girdle region." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0001421 ! pectoral girdle region -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:17:12Z" xsd:dateTime [Term] @@ -223803,7 +223801,7 @@ def: "A zone of skin that is above the iliac crest in the pelvic girdle bone/zon synonym: "skin of posterior iliac crest region" BROAD [] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0007830 ! pelvic girdle bone/zone -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:19:16Z" xsd:dateTime [Term] @@ -223813,7 +223811,7 @@ def: "The region where the frontal, parietal, temporal, and sphenoid bones fuse. comment: This term does not refer to the "gena" of insects, which temple in that instance is a synonym (listed here: http://portal.hymao.org/projects/32/public/ontology_class/show_expanded/482). synonym: "temple region" EXACT [http://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000061 ! anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0003251 ! temporal part of head property_value: dcterms-date "2022-08-29T14:32:57Z" xsd:dateTime @@ -223823,7 +223821,7 @@ name: skin of temple def: "A zone of skin that is part of the temple." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:8480027 ! temple -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-30T06:46:55Z" xsd:dateTime [Term] @@ -223832,7 +223830,7 @@ name: skin of external genitalia def: "A zone of skin that is part of the external genitalia." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0004176 ! external genitalia -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-30T06:55:06Z" xsd:dateTime [Term] @@ -223841,7 +223839,7 @@ name: skin of breast def: "A zone of skin that is part of the breast." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000310 ! breast -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-08-29T14:03:54Z" xsd:dateTime [Term] @@ -223850,7 +223848,7 @@ name: interlobular stroma of mammary gland def: "The interlobular stroma of the mammary gland lobule separates the lobules and intralobular stroma from any substantial direct contact with the adipose tissue. It is more compact than the intralobular stroma." [PMID:18710550] is_a: UBERON:0003584 ! mammary gland connective tissue relationship: adjacent_to UBERON:8480034 ! intralobular stroma of mammary gland -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-10-03T14:21:47Z" xsd:dateTime [Term] @@ -223859,7 +223857,7 @@ name: intralobular stroma of mammary gland def: "The intralobular stroma of the mammary gland lobule contains loosely connected fibroblasts. It is surrounded by the more compact interlobular stroma." [PMID:18710550] is_a: UBERON:0003584 ! mammary gland connective tissue relationship: composed_primarily_of CL:0000057 ! fibroblast -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-10-03T14:38:17Z" xsd:dateTime [Term] @@ -223872,7 +223870,7 @@ synonym: "cervix transition zone" BROAD [PMID:28932806] synonym: "transformation (transitional) zone" BROAD [https://myhealth.alberta.ca/Health/Pages/conditions.aspx?hwid=stt11635] synonym: "transformation zone of the cervix" BROAD [https://myhealth.alberta.ca/Health/Pages/conditions.aspx?hwid=stt11635] is_a: UBERON:0000483 ! epithelium -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0000002 ! uterine cervix property_value: dcterms-date "2022-11-29T14:10:04Z" xsd:dateTime @@ -223886,7 +223884,7 @@ synonym: "posterior end of the glottis" EXACT [PMID:19501483] synonym: "posterior glottis" EXACT [PMID:22614807] synonym: "posterior portion of the glottis" EXACT [PMID:19501483] is_a: UBERON:0000060 ! anatomical wall -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0002486 ! glottis property_value: curator_notes "The posterior commissure of larynx is in reality a misnomer; the vocal folds never join at their posterior ends, and the posterior aspect of the glottis is in reality a collapsible wall." xsd:string {xref="PMID:25272366"} property_value: dcterms-date "2022-12-07T08:52:45Z" xsd:dateTime @@ -223899,7 +223897,7 @@ synonym: "subserosa of fallopian tube" EXACT [PMID:30095490] synonym: "subserosa of oviduct" EXACT [PMID:34440264] intersection_of: UBERON:0012375 ! subserosa intersection_of: part_of UBERON:0003889 ! fallopian tube -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-10-21T08:55:11Z" xsd:dateTime [Term] @@ -223907,7 +223905,7 @@ id: UBERON:8480038 name: meningeal myeloid tissue def: "Lymphomyeloid tissue that consists mainly in granulopoietic cells but that also contains erythroid and lymphoid cells in different stages of maturation." [PMID:3765338] is_a: UBERON:0034769 ! lymphomyeloid tissue -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: in_taxon NCBITaxon:7898 ! Actinopterygii property_value: curator_notes "May be present in Amia and Lepisosteus, Polyodon and Acipenser, but not Polypterus." xsd:string {xref="https://doi.org/10.1111/j.1096-3642.1998.tb02524.x"} property_value: dcterms-date "2022-10-31T07:50:56Z" xsd:dateTime @@ -223923,7 +223921,7 @@ synonym: "Oka (lymphoid) organ" EXACT [PMID:16352551] synonym: "penaeid lymphoid organ" RELATED [PMID:20580831] synonym: "phagocytic organ" RELATED [PMID:12443012] is_a: UBERON:0005057 ! immune organ -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: in_taxon NCBITaxon:6657 ! Crustacea property_value: dcterms-date "2022-11-22T09:15:50Z" xsd:dateTime @@ -223932,7 +223930,7 @@ id: UBERON:8480040 name: ovarian fluid def: "Fish ovary secretion released with eggs." [PMID:8526977] is_a: UBERON:0006537 ! female reproductive gland secretion -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: in_taxon NCBITaxon:7898 ! Actinopterygii property_value: dcterms-date "2022-10-31T07:56:47Z" xsd:dateTime @@ -223942,7 +223940,7 @@ name: testicular sheath def: "Bilayer sheath that covers both the insect male mature gonad and a portion of genital disc-derived structures. It is composed of an outer pigment cell layer, an inner muscle cell layer, and their respective basal laminae." [PMID:9553045] synonym: "testis sheath" EXACT [] {http://purl.obolibrary.org/obo/IAO_0000232="https://www.fortunejournals.com/ijpaes/admin/php/uploads/798_pdf.pdf"} is_a: UBERON:0004923 ! organ component layer -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: in_taxon NCBITaxon:50557 ! Insecta relationship: part_of UBERON:0000473 ! testis property_value: dcterms-date "2022-11-22T09:21:36Z" xsd:dateTime @@ -223953,7 +223951,7 @@ name: menstrual fluid def: "Fluid that consists of necrotic and shed endometrial tissue and blood from mucosal vessels discharged during the reproductive years approximately once a month." [ISBN:0781750563] synonym: "menstrual blood" RELATED [https://en.wikipedia.org/wiki/Menstruation] is_a: UBERON:0006314 ! bodily fluid -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2022-12-13T12:30:22Z" xsd:dateTime [Term] @@ -223961,7 +223959,7 @@ id: UBERON:8480043 name: pelvic wall def: "The tissues that surround the organs that are present within the pelvic region of the trunk. The walls of the pelvis are formed by bones and ligaments that are partly lined with muscles covered with fascia and parietal peritoneum." [ISBN:1451110324] is_a: UBERON:0000060 ! anatomical wall -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0002355 ! pelvic region of trunk property_value: dcterms-date "2022-12-15T13:57:29Z" xsd:dateTime @@ -223971,7 +223969,7 @@ name: long bone cartilage element def: "A skeletal element that is part of a long bone and composed of cartilage tissue." [FMA:32676, https://orcid.org/0000-0002-0819-0473] synonym: "long bone cartilage" EXACT [PMID:33169221] is_a: UBERON:0007844 ! cartilage element -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0002495 ! long bone property_value: dcterms-date "2023-01-18T07:04:30Z" xsd:dateTime @@ -223982,7 +223980,7 @@ def: "A lymph node located inferior to the ilium." [NCIT:C92594] synonym: "subiliac lymphocenter" BROAD [https://dr.lib.iastate.edu/handle/20.500.12876/46336] xref: FMA:323407 is_a: UBERON:0015877 ! parietal pelvic lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: curator_notes "This term is frequently used in swine (PMID:35566137, PMID:27866702) and mice (PMID:16624319, PMID:23328410). According to PMID:32882076 ‘inguinal lymph node’ (PMID:25919005, PMID:17804011) and ‘superficial inguinal lymph node’ (PMID:11581317) have been used incorrectly as synonyms of ‘subiliac lymph node’. In addition, ‘prefemoral lymph node’ and ‘subiliac lymph node’ have been used as synonyms (PMID:22561151, PMID:23228067, PMID:24752354, PMID:8727908). However, in the last version of the 'Systematized Nomenclature of Medicine, International Version' ontology, both terms are linked to different classes, ‘subiliac lymph node’ to ‘lymp node of pelvis, NOS’ and ‘prefemoral lymph node’ to ‘lymph node of lower extremity, NOS’." xsd:string property_value: dcterms-date "2023-02-03T06:41:18Z" xsd:dateTime @@ -223992,7 +223990,7 @@ name: mucosa of rumen def: "The mucosa of rumen is composed of a keratinised stratified squamous epithelium, is rich in mucopolysaccharides and is characterized by the presence of parakeratotis." [PMID:4236739] synonym: "rumen mucosa" EXACT [PMID:4236739] is_a: UBERON:0000344 ! mucosa -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0007365 ! rumen property_value: dcterms-date "2023-02-08T08:53:48Z" xsd:dateTime @@ -224005,7 +224003,7 @@ synonym: "retro-auricular part of head" EXACT [FMA:322167] synonym: "retro-auricular region" EXACT [PMID:33988139] synonym: "retroauricular area" EXACT [PMID:29470606] is_a: UBERON:0000061 ! anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0000033 ! head property_value: curator_notes "Exists at least in all mammals. https://www.imaios.com/en/vet-Anatomy/Vet-Anatomical-Part/Retroauricular-region" xsd:string property_value: dcterms-date "2023-02-09T09:39:18Z" xsd:dateTime @@ -224025,7 +224023,7 @@ synonym: "sura" EXACT [FMA:24984] synonym: "sural region" EXACT [FMA:24984] xref: FMA:24984 is_a: UBERON:0000061 ! anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: dcterms-date "2023-02-27T19:56:29Z" xsd:dateTime @@ -224041,7 +224039,7 @@ synonym: "pretibial" RELATED [https://en.wiktionary.org/wiki/pretibial] synonym: "shin" EXACT [FMA:24985] xref: FMA:24985 is_a: UBERON:0000061 ! anatomical structure -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0003823 ! hindlimb zeugopod property_value: dcterms-date "2023-02-27T20:12:17Z" xsd:dateTime @@ -224052,7 +224050,7 @@ def: "Skin of the back of the lower leg." [https://orcid.org/0000-0002-0819-0473 synonym: "skin of posterior part of leg" EXACT [FMA:37840] xref: FMA:37840 is_a: UBERON:0000014 ! zone of skin -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:8480048 ! calf property_value: dcterms-date "2023-02-27T20:17:12Z" xsd:dateTime @@ -224062,7 +224060,7 @@ name: thoracolumbar junction def: "Area of transition between the posterior curvature of the thoracic spine and the anterior curvature of the lumbar spine." [PMID:29399115] synonym: "thora-columbar junction" EXACT [PMID:27441179] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0009568 ! trunk region of vertebral column property_value: dcterms-date "2023-04-26T07:26:56Z" xsd:dateTime @@ -224071,7 +224069,7 @@ id: UBERON:8480052 name: skin of thoracolumbar junction def: "A zone of skin that is part of the thoracolumbar junction." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000014 ! zone of skin -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:8480051 ! thoracolumbar junction property_value: dcterms-date "2023-04-26T07:45:34Z" xsd:dateTime @@ -224080,7 +224078,7 @@ id: UBERON:8480053 name: skin of umbilical area def: "A zone of skin that is part of the umbilicus and the periumbilical region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000014 ! zone of skin -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0000916 ! abdomen property_value: dcterms-date "2023-04-26T07:54:47Z" xsd:dateTime @@ -224090,7 +224088,7 @@ name: ileocecal lymph node def: "Mesenteric lymph node embedded in the ileocecal fold at both sides of the concavity of the cecum. It drains the terminal ileum." [PMID:15493265, PMID:18251298] synonym: "ileocaecal lymph node" EXACT [PMID:15493265] is_a: UBERON:0002509 ! mesenteric lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: curator_notes "According to the Segen's Medical Dictionary, Farlex, Inc., 2011 the ileocaecal lymph node is an obsolete term that formerly dignified those ileocolic lymph nodes lying in the ileocaecal angle (https://medical-dictionary.thefreedictionary.com/ileocaecal+lymph+nodes). However, this term is still used in domesticated animals as pigs (e.g. PMID:31031713), cats (e.g. PMID:35964104), sheeps (e.g. PMID:15493265) and calves (e.g. PMID:23000583). In few cases this term has been used in humans (PMID:32420296, PMID:35277366, PMID:31456616). Consider if appropriate as a subclass of ileocolic lymph node (UBERON:0016378)." xsd:string property_value: dcterms-date "2023-05-11T12:09:21Z" xsd:dateTime @@ -224101,7 +224099,7 @@ def: "Superior mediastinal lymph node located in the thoracic cavity between the synonym: "left subcarinal lymph node" NARROW [PMID:36899970] synonym: "subcarinal node" EXACT [PMID:30422458] is_a: UBERON:0038651 ! superior mediastinal lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: curator_notes "Subcarinal lymph nodes (station 7) in International Association for the Study of Lung Cancer (IASLC) map coincide with station 2, 8, and 10 lymph nodes in Wang’s map. PMID:26807271" xsd:string property_value: dcterms-date "2023-05-11T12:12:47Z" xsd:dateTime @@ -224110,7 +224108,7 @@ id: UBERON:8480056 name: left supraclavicular lymph node def: "Supraclavicular lymph node located on the left side of a entire appendicular skeleton. The left supraclavicular lymph node drains the kidney, cervix, testis, and pancreas into the thoracic duct." [PMID:31335020] is_a: UBERON:0035279 ! supraclavicular lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-05-11T12:20:06Z" xsd:dateTime [Term] @@ -224118,7 +224116,7 @@ id: UBERON:8480057 name: right supraclavicular lymph node def: "Supraclavicular lymph node located on the right side of a entire appendicular skeleton. The right supraclavicular lymph node drains the breast, lung and upper esophagus into the right lymphatic duct." [PMID:31335020] is_a: UBERON:0035279 ! supraclavicular lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-05-11T12:22:02Z" xsd:dateTime [Term] @@ -224128,7 +224126,7 @@ def: "Lymph node that is the most proximal of the left supraclavicular lymph nod synonym: "Troisier sign" RELATED [PMID:32310560] synonym: "Virchow's node" EXACT [PMID:32310560] is_a: UBERON:8480056 ! left supraclavicular lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-05-11T12:23:20Z" xsd:dateTime [Term] @@ -224140,7 +224138,7 @@ synonym: "peri-gastric lymph node" EXACT [PMID:28447049] synonym: "peri-gastric node" EXACT [PMID:28447049] synonym: "perigastric node" EXACT [PMID:9752878] is_a: UBERON:0002507 ! abdominal lymph node -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: curator_notes "The perigastric lymph nodes include at least the right paracardial lymph nodes, left paracardial lymph nodes, lesser curvature lymph nodes, greater curvature lymph nodes, suprapyloric lymph nodes and infrapyloric lymph nodes. PMID:26973384" xsd:string property_value: dcterms-date "2023-05-11T12:28:12Z" xsd:dateTime @@ -224150,7 +224148,7 @@ name: paraspinal region def: "The region of the body adjacent to the vertebral column." [NCIT:C166000] synonym: "paraspinal" EXACT [NCIT:C129461] is_a: UBERON:0000154 ! posterior region of body -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: only_in_taxon NCBITaxon:7742 ! Vertebrata property_value: dcterms-date "2023-05-16T06:37:51Z" xsd:dateTime @@ -224159,7 +224157,7 @@ id: UBERON:8480061 name: pericardial region def: "The region of the body adjacent to the pericardium and heart." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0009569 ! subdivision of trunk -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-05-16T06:47:28Z" xsd:dateTime [Term] @@ -224168,7 +224166,7 @@ name: femoral head cartilage def: "A hyaline articular cartilage that covers the head of femur. Provides cushioning, softness and low friction for the hip joint." [PMID:29262200, PMID:36292459] is_a: UBERON:0010996 ! articular cartilage of joint is_a: UBERON:8480044 ! long bone cartilage element -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0006767 ! head of femur property_value: dcterms-date "2023-05-30T06:34:18Z" xsd:dateTime @@ -224178,7 +224176,7 @@ name: dorsal iris def: "The dorsal part of the iris. In urodeles (newts and salamanders) the dorsal iris is involved in lens regeneration in a process named Wolffian lens regeneration." [PMID:17030116, PMID:29579253] synonym: "dorsal rim of the iris" EXACT [PMID:29579253] is_a: UBERON:0000064 ! organ part -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: overlaps UBERON:0002506 ! iris epithelium relationship: part_of UBERON:0001769 ! iris property_value: curator_notes "In urodeles, lens regeneration proceeds through two steps. The first step involves the entire circumference of the iris pigmented epithelium. The second step is confined to the pigmented epithelial cells located along the dorsal rim of the iris and involves dorsal-specific activation of the Wnt signaling pathway." xsd:string @@ -224189,7 +224187,7 @@ id: UBERON:8480064 name: secretory coil of eccrine sweat gland def: "Tightly coiled tubule whose function is the production of sweat. The secretory tubule has three types of cells: clear, dark, and myoepithelial." [PMID:31608304, PMID:34395417] is_a: UBERON:0003914 ! epithelial tube -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0000423 ! eccrine sweat gland property_value: dcterms-date "2023-06-08T06:48:01Z" xsd:dateTime @@ -224201,7 +224199,7 @@ synonym: "labial minor salivary gland" EXACT [PMID:34274288] synonym: "labial salivary gland" EXACT [FMA:59792, NCIT:C32904] xref: BTO:0001548 is_a: UBERON:0001830 ! minor salivary gland -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-06-19T12:41:05Z" xsd:dateTime [Term] @@ -224209,7 +224207,7 @@ id: UBERON:8480066 name: interscapular region def: "The region in the upper part of the back between the shoulder blades." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0000475 ! organism subdivision -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: part_of UBERON:0001137 ! dorsum property_value: dcterms-date "2023-06-23T09:06:25Z" xsd:dateTime @@ -224218,7 +224216,7 @@ id: UBERON:8480067 name: bone marrow microvessel def: "Microvessel located in the bone marrow, including arterioles and sinusoids." [PMID:32286470] is_a: UBERON:8410081 ! blood microvessel -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli relationship: located_in UBERON:0002371 ! bone marrow property_value: dcterms-date "2023-06-26T13:48:30Z" xsd:dateTime @@ -224228,7 +224226,7 @@ name: saphenous vein smooth muscle tissue def: "A portion of smooth muscle tissue that is part of a saphenous vein." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0001135 ! smooth muscle tissue intersection_of: part_of UBERON:0007318 ! saphenous vein -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-08-31T11:41:09Z" xsd:dateTime [Term] @@ -224238,7 +224236,7 @@ def: "A zone of skin that is part of the lobe tail." [https://orcid.org/0000-000 synonym: "fluke skin" NARROW [PMID:21959845] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0013131 ! lobe of tail -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-08-29T09:37:23Z" xsd:dateTime [Term] @@ -224247,7 +224245,7 @@ name: skin of shin def: "A zone of skin on the front hindlimb zeugopod." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:8480049 ! front hindlimb zeugopod -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-08-29T09:47:32Z" xsd:dateTime [Term] @@ -224255,7 +224253,7 @@ id: UBERON:8480073 name: skin of scapula region def: "A zone of skin that is above the scapula in the upper back region." [https://orcid.org/0000-0002-0819-0473] is_a: UBERON:0009015 ! upper back skin -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-08-29T09:53:33Z" xsd:dateTime [Term] @@ -224264,7 +224262,7 @@ name: skin of gonad def: "A zone of skin part of some gonad." [https://orcid.org/0000-0002-0819-0473] intersection_of: UBERON:0000014 ! zone of skin intersection_of: part_of UBERON:0000991 ! gonad -relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 +relationship: dc-contributor https://orcid.org/0000-0002-0819-0473 ! Paula Duek Roggli property_value: dcterms-date "2023-08-29T10:24:24Z" xsd:dateTime [Term] @@ -224403,7 +224401,7 @@ comment: Like other bronchi, the walls of a subsegmental bronchus contain plates synonym: "intrasegmental bronchus" RELATED [https://doi.org/10.1016/B978-0-12-381361-9.00009-3] is_a: UBERON:0002185 ! bronchus relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 -relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 +relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 ! Gloria S Pryhuber relationship: has_part UBERON:0001956 ! cartilage of bronchus relationship: has_part UBERON:0004242 ! bronchus smooth muscle relationship: has_part UBERON:0004883 ! lung mesenchyme @@ -224420,7 +224418,7 @@ def: "A ciliated duct part of a bronchial submucosal gland." [PMID:30864819] intersection_of: UBERON:8600014 ! submucosal gland ciliated duct intersection_of: part_of UBERON:8410043 ! bronchus submucosal gland relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 -relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 +relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 ! Gloria S Pryhuber property_value: dcterms-date "2023-05-02T08:07:56Z" xsd:dateTime [Term] @@ -224430,7 +224428,7 @@ def: "A ciliated duct part of a tracheal submucosal gland." [PMID:30864819] intersection_of: UBERON:8600014 ! submucosal gland ciliated duct intersection_of: part_of UBERON:0005203 ! trachea gland relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 -relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 +relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 ! Gloria S Pryhuber property_value: dcterms-date "2023-05-02T08:08:14Z" xsd:dateTime [Term] @@ -224470,7 +224468,7 @@ synonym: "liver right lateral lobe" RELATED [https://orcid.org/0000-0002-6443-93 synonym: "right hepatic posterior sector" EXACT [PMID:30487943] is_a: UBERON:0001062 ! anatomical entity relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 -relationship: dc-contributor https://orcid.org/0000-0002-6443-9376 +relationship: dc-contributor https://orcid.org/0000-0002-6443-9376 ! Jennifer R. Smith relationship: part_of UBERON:0001114 ! right lobe of liver property_value: dcterms-date "2023-05-15T10:46:34Z" xsd:dateTime @@ -224495,7 +224493,7 @@ synonym: "lung segment" EXACT [PMID:33620799] is_a: UBERON:0000063 ! organ subunit relationship: contributes_to_morphology_of UBERON:0000101 ! lobe of lung relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 -relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 +relationship: dc-contributor https://orcid.org/0000-0002-9185-3994 ! Gloria S Pryhuber relationship: part_of UBERON:0000101 ! lobe of lung property_value: dcterms-date "2023-07-20T12:43:29Z" xsd:dateTime @@ -224511,6 +224509,39 @@ relationship: overlaps UBERON:0000949 ! endocrine system relationship: overlaps UBERON:0001016 ! nervous system property_value: dcterms-date "2023-08-29T10:49:45Z" xsd:dateTime +[Term] +id: UBERON:8600019 +name: placental basal plate +def: "A maternal facing structure of the placenta, adjacent to the intervillous space. Major components of the placental basal plate include decidua basalis, fibrinoid, connective tissue, extravillous trophoblasts, and residues of degenerating villi and maternal vessels." [PMID:17059842, PMID:32108320] +synonym: "PBP" RELATED ABBREVIATION [PMID:31002314] +synonym: "placenta basal plate" EXACT [PMID:32108320] +is_a: UBERON:0010000 ! multicellular anatomical structure +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:0001987 ! placenta +relationship: present_in_taxon NCBITaxon:9443 {xref="PMID:31002314"} ! Primates +property_value: dcterms-date "2023-09-14T08:19:13Z" xsd:dateTime + +[Term] +id: UBERON:8600020 +name: placental septum +def: "An extension of the basal plate that protrudes into the intervillous space, creating a system of grooves which delimit elevated areas, also known as cotyledons or maternal lobes." [doi:10.1007/978-3-030-84725-8, PMID:32108320] +synonym: "placenta septum" EXACT [PMID:35190336] +synonym: "placental septa" RELATED PLURAL [doi:10.1007/BF00406305] +is_a: UBERON:0003037 ! septum +relationship: adjacent_to UBERON:0010008 ! placental cotyledon +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +relationship: part_of UBERON:8600019 ! placental basal plate +property_value: dcterms-date "2023-09-14T08:59:34Z" xsd:dateTime + +[Term] +id: UBERON:8600021 +name: chorionic plate blood vessel +def: "A blood vessel that is part of the chorionic plate." [https://www.ncbi.nlm.nih.gov/books/NBK53254/] +intersection_of: UBERON:0001981 ! blood vessel +intersection_of: part_of UBERON:0004027 ! chorionic plate +relationship: dc-contributor https://orcid.org/0000-0001-6677-8489 +property_value: dcterms-date "2023-09-14T09:09:36Z" xsd:dateTime + [Typedef] id: aboral_to name: aboral to diff --git a/src/ontology/uberon-odk.yaml b/src/ontology/uberon-odk.yaml index bebd93a379..74fe8513f7 100644 --- a/src/ontology/uberon-odk.yaml +++ b/src/ontology/uberon-odk.yaml @@ -65,6 +65,10 @@ import_group: mirror_from: http://purl.obolibrary.org/obo/ncbitaxon/subsets/taxslim.owl - id: nbo use_base: TRUE + - id: orcidio + mirror_from: https://w3id.org/orcidio/orcidio.owl + base_iris: + - https://orcid.org/ subset_group: products: - id: appendicular-minimal diff --git a/src/ontology/uberon.Makefile b/src/ontology/uberon.Makefile index f996d1cc2f..710b971b66 100644 --- a/src/ontology/uberon.Makefile +++ b/src/ontology/uberon.Makefile @@ -140,11 +140,18 @@ $(OWLSRC): $(SRC) $(COMPONENTSDIR)/disjoint_union_over.ofn $(REPORTDIR)/$(SRC)-g # For the temporary injection of property chains, see # DEVELOPS_FROM_CHAIN=$(COMPONENTSDIR)/develops-from-chains.owl +# The 'materialize' step is too resource-intensive for the GitHub +# Action runners, so we leave it out when running online QC checks, see +# +ifeq ($(GH_ACTION),true) +MATERIALIZE= +else +MATERIALIZE = materialize -T $(CONFIGDIR)/basic_properties.txt -r elk +endif uberon.owl: $(OWLSRC) $(BRIDGEDIR)/uberon-bridge-to-bfo.owl $(DEVELOPS_FROM_CHAIN) $(ROBOT) merge -i $(OWLSRC) -i $(BRIDGEDIR)/uberon-bridge-to-bfo.owl \ -i $(DEVELOPS_FROM_CHAIN) \ - relax \ - materialize -T $(CONFIGDIR)/basic_properties.txt -r elk \ + relax $(MATERIALIZE) \ reason -r elk --exclude-duplicate-axioms true \ --equivalent-classes-allowed asserted-only \ unmerge -i $(DEVELOPS_FROM_CHAIN) \