From acacee4a861e3c50ace14bef04dd0a04e1a05a3c Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Fri, 4 Nov 2022 14:51:12 +0000 Subject: [PATCH 1/4] Addresses #1655-NTR-peripheral_blood_lymphocyte --- src/ontology/cl-edit.owl | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index c78e8f2fd..05caa2d32 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2782,6 +2782,7 @@ Declaration(Class(obo:CL_4030025)) Declaration(Class(obo:CL_4030026)) Declaration(Class(obo:CL_4030027)) Declaration(Class(obo:CL_4030028)) +Declaration(Class(obo:CL_4030029)) Declaration(Class(obo:CL_4032000)) Declaration(Class(obo:CL_4032001)) Declaration(Class(obo:CP_0000000)) @@ -28944,6 +28945,15 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030028 "amacrine cell, glyc AnnotationAssertion(rdfs:label obo:CL_4030028 "glycinergic amacrine cell") EquivalentClasses(obo:CL_4030028 ObjectIntersectionOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537))) +# Class: obo:CL_4030029 (peripheral blood lymphocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030029 "A lymphocyte located in blood."^^xsd:string) +AnnotationAssertion( obo:CL_4030029 ) +AnnotationAssertion( obo:CL_4030029 "2022-11-04T14:40:00Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_4030029 "blood lymphocyte"^^xsd:string) +AnnotationAssertion(rdfs:label obo:CL_4030029 "peripheral blood lymphocyte") +EquivalentClasses(obo:CL_4030029 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000178))) + # Class: obo:CL_4032000 (club-like cell of the urethral epithelium) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:32497356"^^xsd:string) obo:IAO_0000115 obo:CL_4032000 "An epithelial cell of the urethra that has an expression profile similar to lung club cells. Club-like cells of the urethra epithelium are similar to lung club cells in their expression of SCGB1A1 and in their enrichment of immunomodulatory programs.") From 42bbcbfa22c780ffa3914d4a9a637853685b9524 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Tue, 8 Nov 2022 09:06:05 +0000 Subject: [PATCH 2/4] Update cl-edit.owl --- src/ontology/cl-edit.owl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 05caa2d32..8d59267bd 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -28950,7 +28950,7 @@ EquivalentClasses(obo:CL_4030028 ObjectIntersectionOf(obo:CL_0000561 ObjectSomeV AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030029 "A lymphocyte located in blood."^^xsd:string) AnnotationAssertion( obo:CL_4030029 ) AnnotationAssertion( obo:CL_4030029 "2022-11-04T14:40:00Z"^^xsd:dateTime) -AnnotationAssertion(oboInOwl:hasRelatedSynonym obo:CL_4030029 "blood lymphocyte"^^xsd:string) +AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_4030029 "blood lymphocyte"^^xsd:string) AnnotationAssertion(rdfs:label obo:CL_4030029 "peripheral blood lymphocyte") EquivalentClasses(obo:CL_4030029 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000178))) From 930acb440decbe021f5cf9e04d0dcd51f284bff0 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Mon, 14 Nov 2022 10:21:14 +0000 Subject: [PATCH 3/4] blood_lymphocyte and peripheral_blood_lymphocyte --- src/ontology/cl-edit.owl | 17 +++++++++++++---- 1 file changed, 13 insertions(+), 4 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 8d59267bd..1b02c6ba4 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -2783,6 +2783,7 @@ Declaration(Class(obo:CL_4030026)) Declaration(Class(obo:CL_4030027)) Declaration(Class(obo:CL_4030028)) Declaration(Class(obo:CL_4030029)) +Declaration(Class(obo:CL_4030030)) Declaration(Class(obo:CL_4032000)) Declaration(Class(obo:CL_4032001)) Declaration(Class(obo:CP_0000000)) @@ -28945,15 +28946,23 @@ AnnotationAssertion(oboInOwl:hasExactSynonym obo:CL_4030028 "amacrine cell, glyc AnnotationAssertion(rdfs:label obo:CL_4030028 "glycinergic amacrine cell") EquivalentClasses(obo:CL_4030028 ObjectIntersectionOf(obo:CL_0000561 ObjectSomeValuesFrom(obo:RO_0002215 obo:GO_0061537))) -# Class: obo:CL_4030029 (peripheral blood lymphocyte) +# Class: obo:CL_4030029 (blood lymphocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030029 "A lymphocyte located in blood."^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) obo:IAO_0000115 obo:CL_4030029 "A lymphocyte located in blood."^^xsd:string) AnnotationAssertion( obo:CL_4030029 ) AnnotationAssertion( obo:CL_4030029 "2022-11-04T14:40:00Z"^^xsd:dateTime) -AnnotationAssertion(oboInOwl:hasBroadSynonym obo:CL_4030029 "blood lymphocyte"^^xsd:string) -AnnotationAssertion(rdfs:label obo:CL_4030029 "peripheral blood lymphocyte") +AnnotationAssertion(rdfs:label obo:CL_4030029 "blood lymphocyte"^^xsd:string) EquivalentClasses(obo:CL_4030029 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeValuesFrom(obo:BFO_0000050 obo:UBERON_0000178))) +# Class: obo:CL_4030030 (peripheral blood lymphocyte) + +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030030 "A blood lymphocte located in arterial blood or venous blood."^^xsd:string) +AnnotationAssertion( obo:CL_4030030 ) +AnnotationAssertion( obo:CL_4030030 "2022-11-14T10:08:14Z"^^xsd:dateTime) +AnnotationAssertion(oboInOwl:seeAlso obo:CL_4030030 ) +AnnotationAssertion(rdfs:label obo:CL_4030030 "peripheral blood lymphocyte") +EquivalentClasses(obo:CL_4030030 ObjectIntersectionOf(obo:CL_4030029 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013755) ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013756)))) + # Class: obo:CL_4032000 (club-like cell of the urethral epithelium) AnnotationAssertion(Annotation(oboInOwl:hasDbXref "PMID:30566875"^^xsd:string) Annotation(oboInOwl:hasDbXref "PMID:32497356"^^xsd:string) obo:IAO_0000115 obo:CL_4032000 "An epithelial cell of the urethra that has an expression profile similar to lung club cells. Club-like cells of the urethra epithelium are similar to lung club cells in their expression of SCGB1A1 and in their enrichment of immunomodulatory programs.") From 02b71cf3df8402738257513394d2a6c53f6850e9 Mon Sep 17 00:00:00 2001 From: bvarner-ebi <95643797+bvarner-ebi@users.noreply.github.com> Date: Tue, 22 Nov 2022 10:40:20 +0000 Subject: [PATCH 4/4] Update cl-edit.owl --- src/ontology/cl-edit.owl | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/src/ontology/cl-edit.owl b/src/ontology/cl-edit.owl index 1b02c6ba4..39cfb95d7 100644 --- a/src/ontology/cl-edit.owl +++ b/src/ontology/cl-edit.owl @@ -28956,12 +28956,14 @@ EquivalentClasses(obo:CL_4030029 ObjectIntersectionOf(obo:CL_0000542 ObjectSomeV # Class: obo:CL_4030030 (peripheral blood lymphocyte) -AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030030 "A blood lymphocte located in arterial blood or venous blood."^^xsd:string) +AnnotationAssertion(Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref ) Annotation(oboInOwl:hasDbXref "PMID:31092833"^^xsd:string) obo:IAO_0000115 obo:CL_4030030 "A blood lymphocte located in the flowing, circulating blood of the body."^^xsd:string) AnnotationAssertion( obo:CL_4030030 ) AnnotationAssertion( obo:CL_4030030 "2022-11-14T10:08:14Z"^^xsd:dateTime) AnnotationAssertion(oboInOwl:seeAlso obo:CL_4030030 ) AnnotationAssertion(rdfs:label obo:CL_4030030 "peripheral blood lymphocyte") -EquivalentClasses(obo:CL_4030030 ObjectIntersectionOf(obo:CL_4030029 ObjectUnionOf(ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013755) ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013756)))) +SubClassOf(obo:CL_4030030 obo:CL_4030029) +SubClassOf(obo:CL_4030030 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013755)) +SubClassOf(obo:CL_4030030 ObjectSomeValuesFrom(obo:RO_0001025 obo:UBERON_0013756)) # Class: obo:CL_4032000 (club-like cell of the urethral epithelium)