diff --git a/src/mappings/fbbt.sssom.tsv b/src/mappings/fbbt.sssom.tsv index 339f29651..1183babe8 100644 --- a/src/mappings/fbbt.sssom.tsv +++ b/src/mappings/fbbt.sssom.tsv @@ -6,11 +6,12 @@ #mapping_set_id: "http://purl.obolibrary.org/obo/fbbt/fbbt-mappings.sssom.tsv" #mapping_set_description: "Mappings between the Drosophila Anatomy Ontology and foreign ontologies." #creator_id: +# - "ORCID:0000-0002-1373-1705" # - "ORCID:0000-0002-6095-8718" #license: "https://creativecommons.org/licenses/by/4.0/" #subject_source: "obo:fbbt.owl" #object_source: "obo:cl.owl" -#mapping_date: "2024-05-31" +#mapping_date: "2024-07-12" subject_id subject_label predicate_id object_id mapping_justification FBbt:00000092 primordial germ cell semapv:crossSpeciesExactMatch CL:0000301 semapv:ManualMappingCuration FBbt:00000124 epithelial cell semapv:crossSpeciesExactMatch CL:0000066 semapv:ManualMappingCuration diff --git a/src/ontology/components/hra_subset.owl b/src/ontology/components/hra_subset.owl index 3611025cc..dd09858ac 100644 --- a/src/ontology/components/hra_subset.owl +++ b/src/ontology/components/hra_subset.owl @@ -2197,6 +2197,15 @@ + + + + + + + + + @@ -2242,6 +2251,15 @@ + + + + + + + + + @@ -2917,15 +2935,6 @@ - - - - - - - - - @@ -4132,15 +4141,6 @@ - - - - - - - - - diff --git a/src/ontology/imports/merged_import.owl b/src/ontology/imports/merged_import.owl index 1dc32541c..e836a9209 100644 --- a/src/ontology/imports/merged_import.owl +++ b/src/ontology/imports/merged_import.owl @@ -7,8 +7,8 @@ Prefix(rdfs:=) Ontology( - -Annotation(owl:versionInfo "2024-08-07") + +Annotation(owl:versionInfo "2024-08-16") Declaration(Class()) Declaration(Class()) @@ -3443,6 +3443,7 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -4262,6 +4263,8 @@ Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) +Declaration(Class()) +Declaration(Class()) Declaration(Class()) Declaration(Class()) Declaration(Class()) @@ -51792,6 +51795,18 @@ AnnotationAssertion(rdfs:label "CD8- EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) SubClassOf( ) +# Class: (glomerular endothelium fenestra) + +AnnotationAssertion(Annotation( "GOC:cjm") Annotation( "MP:0011454") Annotation( "PMID:19129259") "A large plasma membrane-lined circular pore that perforates the flattened glomerular endothelium and, unlike those of other fenestrated capillaries, is not spanned by diaphragms; the density and size of glomerular fenestrae account, at least in part, for the high permeability of the glomerular capillary wall to water and small solutes.") +AnnotationAssertion( "bf") +AnnotationAssertion( "2011-12-12T10:53:24Z") +AnnotationAssertion(Annotation( "PMID:19129259") "GEnC fenestration") +AnnotationAssertion(Annotation( "PMID:19129259") "glomerular endothelial cell fenestration") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "GO:0036053") +AnnotationAssertion(rdfs:label "glomerular endothelium fenestra") +SubClassOf( ) + # Class: (direct ossification) AnnotationAssertion(Annotation( "GO_REF:0000034") "The formation of bone or of a bony substance, or the conversion of fibrous tissue or of cartilage into bone or a bony substance, that does not require the replacement of preexisting tissues.") @@ -62426,6 +62441,32 @@ AnnotationAssertion( "negative regulation of neurotransmitter secretion") EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) +# Class: (pore complex) + +AnnotationAssertion(Annotation( "ISBN:0198506732") "A protein complex providing a discrete opening in a membrane that allows the passage of gases and/or liquids.") +AnnotationAssertion( "https://github.com/geneontology/go-ontology/issues/20452"^^xsd:anyURI) +AnnotationAssertion( "pore") +AnnotationAssertion( "cellular_component") +AnnotationAssertion( "channel-forming toxin activity") +AnnotationAssertion( "pore-forming toxin activity") +AnnotationAssertion( "GO:0046930") +AnnotationAssertion(rdfs:label "pore complex") +SubClassOf( ) +SubClassOf( ObjectSomeValuesFrom( )) + +# Class: (pore complex assembly) + +AnnotationAssertion(Annotation( "GOC:jl") Annotation( "GOC:mah") "The aggregation, arrangement and bonding together of a set of components to form a pore complex. A pore complex is a small opening in a membrane that allows the passage of liquids and/or gases.") +AnnotationAssertion( "pore biosynthesis") +AnnotationAssertion( "pore formation") +AnnotationAssertion( "biological_process") +AnnotationAssertion(Annotation( "GOC:mah") "pore complex biogenesis") +AnnotationAssertion( "pore-forming toxin activity") +AnnotationAssertion( "GO:0046931") +AnnotationAssertion(rdfs:comment "See also the cellular component term 'pore complex ; GO:0046930'.") +AnnotationAssertion(rdfs:label "pore complex assembly") +EquivalentClasses( ObjectIntersectionOf( ObjectSomeValuesFrom( ))) + # Class: (carboxylic acid transport) AnnotationAssertion(Annotation( "GOC:ai") "The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-).") diff --git a/src/patterns/definitions.owl b/src/patterns/definitions.owl index 2937ddae4..16ea5f6ce 100644 --- a/src/patterns/definitions.owl +++ b/src/patterns/definitions.owl @@ -6,8 +6,9 @@ Prefix(xsd:=) Prefix(rdfs:=) -Ontology( -Annotation(owl:versionInfo "2024-08-09") +Ontology( + +Annotation(owl:versionInfo "2024-08-16") Declaration(Class()) Declaration(Class())