diff --git a/docs/odk-workflows/ReleaseWorkflow.md b/docs/odk-workflows/ReleaseWorkflow.md
index 8029d2f1..60c99dbc 100644
--- a/docs/odk-workflows/ReleaseWorkflow.md
+++ b/docs/odk-workflows/ReleaseWorkflow.md
@@ -17,30 +17,26 @@ Preparation:
3. Locally make sure you have the latest changes from master (`git pull`). You can also use [GitHub Desktop](https://desktop.github.com/) for interacting with the OBA repo.
4. Checkout a new branch (e.g. `git checkout -b release-202X-XX-XX`)
5. You may or may not want to refresh your imports as part of your release strategy (see [here](UpdateImports.md)).
-6. Make sure you have the latest ODK installed by running `docker pull obolibrary/odkfull`
- ```shell
- docker pull obolibrary/odkfull
- ```
+6. Make sure you have the latest ODK installed by running: `docker pull obolibrary/odkfull`
+
+
To actually run the release, you:
1. Open a command line terminal window and navigate to the `src/ontology` directory (`cd bio-attribute-ontology/src/ontology`).
-2. Start the release pipeline by issuing the command:
- ```shell
- sh run.sh make prepare_release_fast
- ```
- NOTE: It is recommended that you run the release pipeline uncoupled from refreshing imports. However, in case you do need to refresh all the imports at this time, you can achieve that by:
- ```shell
- sh run.sh make prepare_release -B
- ```
+2. Start the release pipeline by issuing the command: `sh run.sh make prepare_release_fast`
+ NOTE: It is recommended that you run the release pipeline uncoupled from refreshing imports. However, in case you do need to refresh all the imports at this time, you can achieve that by issuing the command: `sh run.sh make prepare_release -B`
3. If everything went well, you should see the following output on your machine:
- ```shell
- ...
- Release files are now in ../.. - now you should commit, push and make a release on your git hosting site such as GitHub or GitLab
- make[1]: Leaving directory '/work/src/ontology'
- Please remember to update your ODK image from time to time: https://oboacademy.github.io/obook/howto/odk-update/.
- ```
- This will create all the specified release targets (OBO, OWL, JSON, and the variants, ont-full and ont-base) and copy them into your release directory (the top level of your repo).
+
+`...`
+
+```
+Release files are now in ../.. - now you should commit, push and make a release
+on your git hosting site such as GitHub or GitLab
+make[1]: Leaving directory '/work/src/ontology'
+Please remember to update your ODK image from time to time: https://oboacademy.github.io/obook/howto/odk-update/.
+```
+This will create all the specified release targets (OBO, OWL, JSON, and the variants, ont-full and ont-base) and copy them into your release directory (the top level of your repo).
## Review the release
diff --git a/oba-base.owl b/oba-base.owl
index e7e0114c..91474853 100644
--- a/oba-base.owl
+++ b/oba-base.owl
@@ -12,7 +12,7 @@
xmlns:terms1="http://www.geneontology.org/formats/oboInOwl#http://purl.org/dc/terms/"
xmlns:oboInOwl="http://www.geneontology.org/formats/oboInOwl#">
-
+
A collection of biological attributes (traits) covering all kingdoms of life. Interoperable with VT (vertebrate trait ontology) and TO (plant trait ontology). Extends PATO.
Ontology of Biological Attributes (OBA)
@@ -20,7 +20,7 @@
oba
1.2
- 2024-05-13
+ 2024-09-12
@@ -162,6 +162,12 @@
+
+
+
+
+
+
@@ -257,6 +263,18 @@
+
+
+
+
+
+
+
+
+
+
+
+
-
-
-
-
-
@@ -9346,6 +9358,12 @@
+
+
+
+
+
+
@@ -11091,7 +11109,7 @@
-
+
@@ -13156,14 +13174,8 @@
-
+
-
-
-
-
-
-
The concentration of of a potassium(1+).
concentration of of potassium(1+)
oba
@@ -15272,7 +15284,6 @@
-
@@ -19552,7 +19563,6 @@
-
@@ -21173,13 +21183,8 @@
+
-
-
-
-
-
-
The altered number of of a subcutaneous adipose tissue.
altered number of of subcutaneous adipose tissue
subcutaneous adipose tissue altered number of
@@ -42419,20 +42424,20 @@
- The amount of a central incisor tooth.
- amount of central incisor tooth
- central incisor tooth amount
+ The amount of a incisor tooth 1.
+ amount of incisor tooth 1
+ incisor tooth 1 amount
- The amount of a central incisor tooth.
+ The amount of a incisor tooth 1.
AUTO:patterns/patterns/entity_attribute
- amount of central incisor tooth
+ amount of incisor tooth 1
AUTO:patterns/patterns/entity_attribute
@@ -42452,7 +42457,6 @@
-
@@ -42865,7 +42869,6 @@
-
@@ -50225,12 +50228,7 @@
-
-
-
-
-
-
+
The altered number of of a adipose tissue.
altered number of of adipose tissue
adipose tissue altered number of
@@ -61730,15 +61728,10 @@
+
-
-
-
-
-
-
The altered number of of a retina.
altered number of of retina
retina altered number of
@@ -65565,7 +65558,7 @@
-
+
@@ -65840,14 +65833,8 @@
-
+
-
-
-
-
-
-
The altered number of of a platelet.
altered number of of platelet
platelet altered number of
@@ -66599,8 +66586,8 @@
-
+
@@ -71767,20 +71754,20 @@
- The amount of a lateral incisor tooth.
- amount of lateral incisor tooth
- lateral incisor tooth amount
+ The amount of a incisor tooth 2.
+ amount of incisor tooth 2
+ incisor tooth 2 amount
- The amount of a lateral incisor tooth.
+ The amount of a incisor tooth 2.
AUTO:patterns/patterns/entity_attribute
- amount of lateral incisor tooth
+ amount of incisor tooth 2
AUTO:patterns/patterns/entity_attribute
@@ -71800,7 +71787,6 @@
-
@@ -73295,16 +73281,10 @@
+
-
-
-
-
-
-
-
The altered number of of a erythroid progenitor cell.
altered number of of erythroid progenitor cell
erythroid progenitor cell altered number of
@@ -84946,13 +84926,7 @@
-
-
-
-
-
-
-
+
The rate of a glomerular filtration.
rate of glomerular filtration
glomerular filtration rate
@@ -91755,7 +91729,7 @@
-
+
@@ -99714,15 +99688,10 @@
+
-
-
-
-
-
-
The altered number of of a white pulp of spleen.
altered number of of white pulp of spleen
white pulp of spleen altered number of
@@ -105813,14 +105782,8 @@
-
+
-
-
-
-
-
-
The acidity of a stomach.
acidity of stomach
stomach acidity
@@ -115700,13 +115663,8 @@
+
-
-
-
-
-
-
The altered number of of a mature ovarian follicle.
altered number of of mature ovarian follicle
mature ovarian follicle altered number of
@@ -116976,7 +116934,6 @@
-
@@ -119055,7 +119012,7 @@
-
+
@@ -119181,7 +119138,6 @@
-
@@ -119389,7 +119345,6 @@
-
@@ -119431,7 +119386,6 @@
-
@@ -120678,14 +120632,9 @@
+
-
-
-
-
-
-
The altered number of of a pancreatic epsilon cell.
altered number of of pancreatic epsilon cell
pancreatic epsilon cell altered number of
@@ -124328,6 +124277,7 @@
+
@@ -129637,32 +129587,33 @@
-
+
-
+
+
-
+
- The morphology of a sperm connecting piece.
- morphology of sperm connecting piece
- sperm connecting piece morphology
+ The morphology of a sperm head-tail coupling apparatus.
+ morphology of sperm head-tail coupling apparatus
+ sperm head-tail coupling apparatus morphology
- The morphology of a sperm connecting piece.
+ The morphology of a sperm head-tail coupling apparatus.
obo:oba/patterns/entity_attribute_part_of
- morphology of sperm connecting piece
+ morphology of sperm head-tail coupling apparatus
obo:oba/patterns/entity_attribute_part_of
@@ -129964,15 +129915,10 @@
+
-
-
-
-
-
-
The altered number of of a foam cell.
altered number of of foam cell
foam cell altered number of
@@ -143991,8 +143937,8 @@
+
-
@@ -144041,20 +143987,20 @@
- The amount of a type II pneumocyte.
- amount of type II pneumocyte
- type II pneumocyte amount
+ The amount of a pulmonary alveolar type 2 cell.
+ amount of pulmonary alveolar type 2 cell
+ pulmonary alveolar type 2 cell amount
- The amount of a type II pneumocyte.
+ The amount of a pulmonary alveolar type 2 cell.
AUTO:patterns/patterns/entity_attribute
- amount of type II pneumocyte
+ amount of pulmonary alveolar type 2 cell
AUTO:patterns/patterns/entity_attribute
@@ -144125,20 +144071,20 @@
- The amount of a type I pneumocyte.
- amount of type I pneumocyte
- type I pneumocyte amount
+ The amount of a pulmonary alveolar type 1 cell.
+ amount of pulmonary alveolar type 1 cell
+ pulmonary alveolar type 1 cell amount
- The amount of a type I pneumocyte.
+ The amount of a pulmonary alveolar type 1 cell.
AUTO:patterns/patterns/entity_attribute
- amount of type I pneumocyte
+ amount of pulmonary alveolar type 1 cell
AUTO:patterns/patterns/entity_attribute
@@ -144444,8 +144390,7 @@
-
-
+
@@ -147584,8 +147529,8 @@
+
-
@@ -150217,9 +150162,7 @@
-
-
@@ -155909,20 +155852,20 @@
- The amount of a posterior vena cava.
- amount of posterior vena cava
- posterior vena cava amount
+ The amount of a inferior vena cava.
+ amount of inferior vena cava
+ inferior vena cava amount
- The amount of a posterior vena cava.
+ The amount of a inferior vena cava.
AUTO:patterns/patterns/entity_attribute
- amount of posterior vena cava
+ amount of inferior vena cava
AUTO:patterns/patterns/entity_attribute
@@ -158880,15 +158823,10 @@
+
-
-
-
-
-
-
The altered number of of a diaphragm.
altered number of of diaphragm
diaphragm altered number of
@@ -159494,15 +159432,10 @@
+
-
-
-
-
-
-
The altered number of of a astrocyte.
altered number of of astrocyte
astrocyte altered number of
@@ -179066,7 +178999,7 @@
subcutaneous adipose tissue proportionality to trait
oba
OBA:1000024
- subcutaneous adipose tissue proportionality to
+ subcutaneous adipose tissue ratio
@@ -198393,27 +198326,27 @@
-
+
- The quality of a histidine metabolic process.
- quality of histidine metabolic process
- histidine metabolic process quality
+ The quality of a L-histidine metabolic process.
+ quality of L-histidine metabolic process
+ L-histidine metabolic process quality
- The quality of a histidine metabolic process.
+ The quality of a L-histidine metabolic process.
obo:oba/patterns/entity_attribute_part_of
- quality of histidine metabolic process
+ quality of L-histidine metabolic process
obo:oba/patterns/entity_attribute_part_of
@@ -198473,6 +198406,7 @@
+
@@ -233192,6 +233126,7 @@
+
@@ -234046,6 +233981,7 @@
+
@@ -234351,8 +234287,8 @@
-
+
@@ -234537,6 +234473,7 @@
+
@@ -234720,6 +234657,7 @@
+
@@ -234781,6 +234719,7 @@
+
@@ -235330,6 +235269,7 @@
+
@@ -235452,6 +235392,7 @@
+
@@ -235880,6 +235821,7 @@
+
@@ -236063,6 +236005,7 @@
+
@@ -236491,6 +236434,7 @@
+
@@ -236676,6 +236620,7 @@
+
@@ -236798,6 +236743,7 @@
+
@@ -237042,6 +236988,7 @@
+
@@ -237164,6 +237111,7 @@
+
@@ -237347,6 +237295,7 @@
+
@@ -237408,6 +237357,7 @@
+
@@ -237775,6 +237725,7 @@
+
@@ -237836,6 +237787,7 @@
+
@@ -237897,6 +237849,7 @@
+
@@ -237958,6 +237911,7 @@
+
@@ -238019,6 +237973,7 @@
+
@@ -238141,6 +238096,7 @@
+
@@ -238202,6 +238158,7 @@
+
@@ -238263,6 +238220,7 @@
+
@@ -239552,6 +239510,7 @@
+
@@ -239674,6 +239633,7 @@
+
@@ -239918,6 +239878,7 @@
+
@@ -241260,6 +241221,7 @@
+
@@ -241382,6 +241344,7 @@
+
@@ -241565,6 +241528,7 @@
+
@@ -241932,6 +241896,7 @@
+
@@ -242054,6 +242019,7 @@
+
@@ -242115,6 +242081,7 @@
+
@@ -242482,6 +242449,7 @@
+
@@ -242787,6 +242755,7 @@
+
@@ -242909,6 +242878,7 @@
+
@@ -242970,6 +242940,7 @@
+
@@ -243092,6 +243063,7 @@
+
@@ -244130,6 +244102,7 @@
+
@@ -244191,6 +244164,7 @@
+
@@ -244252,6 +244226,7 @@
+
@@ -245655,6 +245630,7 @@
+
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+
@@ -245899,6 +245876,7 @@
+
@@ -246143,6 +246121,7 @@
+
@@ -246570,6 +246549,7 @@
+
@@ -246876,6 +246856,7 @@
+
@@ -247059,6 +247040,7 @@
+
@@ -247486,6 +247468,7 @@
+
@@ -247608,6 +247591,7 @@
+
@@ -248035,6 +248019,7 @@
+
@@ -248157,6 +248142,7 @@
+
@@ -248218,6 +248204,7 @@
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@@ -248401,6 +248388,7 @@
+
@@ -248584,6 +248572,7 @@
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@@ -248889,6 +248878,7 @@
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@@ -249560,6 +249550,7 @@
+
@@ -249865,6 +249856,7 @@
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@@ -249987,6 +249979,7 @@
+
@@ -250170,6 +250163,7 @@
+
@@ -250292,6 +250286,7 @@
+
@@ -250658,6 +250653,7 @@
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@@ -250963,6 +250959,7 @@
+
@@ -251024,6 +251021,7 @@
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@@ -251451,6 +251450,7 @@
+
@@ -251512,6 +251512,7 @@
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+
@@ -251878,6 +251880,7 @@
+
@@ -252733,6 +252736,7 @@
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+
@@ -254319,6 +254325,7 @@
+
@@ -254380,6 +254387,7 @@
+
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+
@@ -254929,6 +254938,7 @@
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@@ -255234,6 +255245,7 @@
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@@ -255417,6 +255429,7 @@
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@@ -255478,6 +255491,7 @@
+
@@ -255600,6 +255614,7 @@
+
@@ -255661,6 +255676,7 @@
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@@ -257003,6 +257023,7 @@
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@@ -257064,6 +257085,7 @@
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@@ -257247,6 +257269,7 @@
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@@ -257552,6 +257575,7 @@
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@@ -258162,6 +258187,7 @@
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@@ -258223,6 +258249,7 @@
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@@ -258528,6 +258555,7 @@
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@@ -258650,6 +258678,7 @@
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@@ -258711,6 +258740,7 @@
+
@@ -258772,6 +258802,7 @@
+
@@ -258894,6 +258925,7 @@
+
@@ -259016,6 +259048,7 @@
+
@@ -259199,6 +259232,7 @@
+
@@ -259504,6 +259538,7 @@
+
@@ -259626,6 +259661,7 @@
+
@@ -259931,6 +259967,7 @@
+
@@ -260175,6 +260212,7 @@
+
@@ -260358,6 +260396,7 @@
+
@@ -260480,6 +260519,7 @@
+
@@ -261090,6 +261130,7 @@
+
@@ -261639,6 +261680,7 @@
+
@@ -262249,6 +262291,7 @@
+
@@ -262981,6 +263024,7 @@
+
@@ -263042,6 +263086,7 @@
+