PNC2012 protist biodiversity from IOPAN to Darwin Core

[cnrdh]

41 data/deposit/iopan/protist-biodiversity/pnc2012-protist-biodiversity.tsv

[cnrdh]

expedition	fieldNumber	locality	depth [m]	data	V chamber	Vth filtered [L]	Vbot[ml]	class	scientificName	taxonRemarks	N	fields	K	cells in chamb	cells in 1000 ml	eventRemarks	verbatimScientificName
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Bacillariophyceae	Thalassiosira sp.		5	100	321.61	16.0805	53.6016666666667		
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Peridinea	Torodinium robustum		2	100	321.61	6.4322	21.4406666666667		
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Peridinea	Neoceratium fusus		1	100	321.61	3.2161	10.7203333333333		
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Peridinea	Neoceratium arcticum		1	100	321.61	3.2161	10.7203333333333		
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Peridinea	Peridinea cysts		2	98	4407.47	89.9483673469388	299.827891156463		
PNC2012		Sofiadypet	15	2012-01-14	10	60	200	Peridinea	Gymnodinium galeatum		1	98	4407.47	44.9741836734694	149.913945578231		
PNC2012		Rijpfjorden	35	2012-01-12	10	60	200	Peridinea	Dinophysis rotundata		3	94	321.61	10.2641489361702	34.213829787234		
PNC2012		Rijpfjorden	35	2012-01-12	10	60	200	Peridinea	Peridinea non det.thecate 10-20	thecate 10-20	5	94	321.61	17.106914893617	57.0230496453901		
PNC2012		Rijpfjorden	35	2012-01-12	10	60	200	Bacillariophyceae	Thalassiosira sp.		2	94	321.61	6.84276595744681	22.809219858156		
PNC2012		Rijpfjorden	35	2012-01-12	10	60	200	Peridinea	Gymnodinium galeatum		1	104	4407.47	42.3795192307692	141.265064102564		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Protoperidinium cerasus		1	120	321.61	2.68008333333333	8.93361111111111		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Dinophysis rotundata		1	120	321.61	2.68008333333333	8.93361111111111		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Gymnodiniales 40-50um	40-50	1	120	321.61	2.68008333333333	8.93361111111111		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Gymnodinium sp.5-10	5-10	1	128	4407.47	34.433359375	114.777864583333		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Peridinea non det.thecate 20-30	thecate 20-30	1	128	4407.47	34.433359375	114.777864583333		
PNC2012		Rijpfjorden	0	2012-01-12	10	60	200	Peridinea	Gymnodinium sp.20-30	20-30	1	128	4407.47	34.433359375	114.777864583333		
PNC2012		Sofiadypet	150	2012-01-14	10	60	200	Bacillariophyceae	Thalassiosira sp.		1	127	321.61	2.53236220472441	8.44120734908137		
PNC2012		Sofiadypet	150	2012-01-14	10	60	200	Prymnesiophyceae	Coccolithus pelagicus		2	108	4407.47	81.6198148148148	272.066049382716		
PNC2012		Sofiadypet	150	2012-01-14	10	60	200	Peridinea	Pronoctiluca pelagica		1	108	4407.47	40.8099074074074	136.033024691358		
PNC2012		Sofiadypet	150	2012-01-14	10	60	200	Dictyochophyceae	Dictyocha speculum		1	108	4407.47	40.8099074074074	136.033024691358		
PNC2012		Rijpfjorden		2012-01-12	10	60	200	Bacillariophyceae	Gyrosigma fasciola		1	100	4407.47	44.0747	146.915666666667	Sampled at bottom	
PNC2012		Rijpfjorden		2012-01-12	10	60	200	Peridinea	Peridinea cysts		1	100	4407.47	44.0747	146.915666666667	Sampled at bottom	
PNC2012		Rijpfjorden	35	2012-01-12	50	1	1000	Peridinea	Peridinea cysts		2	83	321.61	7.74963855421687	7749.63855421687		
PNC2012		Rijpfjorden	35	2012-01-12	50	1	1000	Peridinea	Gymnodinium sp.cf wulffii	cf wulffii	2	89	4407.47	99.0442696629214	99044.2696629214		
PNC2012		Rijpfjorden	35	2012-01-12	50	1	1000	Dictyochophyceae	Dictyocha speculum		1	89	4407.47	49.5221348314607	49522.1348314607		
PNC2012		Rijpfjorden	35	2012-01-12	50	1	1000	Bacillariophyceae	Pseudo-nitzschia sp.		1	89	4407.47	49.5221348314607	49522.1348314607		
PNC2012		Rijpfjorden	15	2012-01-12	50	1	1000	Peridinea	Neoceratium arcticum		1	103	321.61	3.12242718446602	3122.42718446602		
PNC2012		Sofiadypet	5	2012-01-14	50	1	1000	Bacillariophyceae	Thalassiosira sp.cf angulata	cf angulata	2	112	321.61	5.74303571428571	5743.03571428571		
PNC2012		Sofiadypet	5	2012-01-14	50	1	1000	Bacillariophyceae	Nitzschia sp.30-40	30-40	3	107	4407.47	123.573925233645	123573.925233645		
PNC2012		Sofiadypet	5	2012-01-14	50	1	1000	Peridinea	Gymnodinium sp.cf wulffii	cf wulffii	2	107	4407.47	82.3826168224299	82382.6168224299		
PNC2012		Sofiadypet	5	2012-01-14	50	1	1000	Peridinea	Gymnodinium sp.10-20	10-20	2	107	4407.47	82.3826168224299	82382.6168224299		
PNC2012		Sofiadypet	5	2012-01-14	50	1	1000	Bacillariophyceae	Pseudo-nitzschia pseudodelicatissima		2	107	4407.47	82.3826168224299	82382.6168224299		Pseudonitzschia pseudodelicatissima
PNC2012		Sofiadypet	0	2012-01-12	50	1	1000	Peridinea	Protoperidinium pellucidum		1	83	321.61	3.87481927710843	3874.81927710843		
PNC2012		Sofiadypet	0	2012-01-12	50	1	1000	Bacillariophyceae	Thalassiosira sp.cf angulata	cf angulata	1	83	321.61	3.87481927710843	3874.81927710843		
PNC2012		Sofiadypet	0	2012-01-12	50	1	1000	Peridinea	Gymnodinium galeatum		1	95	4407.47	46.3944210526316	46394.4210526316		
PNC2012		Sofiadypet	75	2012-01-14	50	1	1000	Bacillariophyceae	Thalassiosira sp.10-20	10-20	1	93	4407.47	47.3921505376344	47392.1505376344		
PNC2012		Rijpfjorden	75	2012-01-12	50	1	1000	Peridinea	Dinophysis rotundata		1	94	321.61	3.4213829787234	3421.3829787234		
PNC2012		Rijpfjorden	75	2012-01-12	50	1	1000	Peridinea	Gymnodinium sp.10-20	10-20	1	99	4407.47	44.519898989899	44519.898989899		
PNC2012		Sofiadypet	15	2012-01-14	50	1	1000	Bacillariophyceae	Thalassiosira sp.		2	87	321.61	7.39333333333333	7393.33333333333		
PNC2012		Rijpfjorden	0	2012-01-12	50	1	1000	Peridinea	Gymnodinium wulffii		1	113	4407.47	39.0041592920354	39004.1592920354		

[cnrdh]

Hmm, as seen above data has no fieldNumber just location (and date/depth)
And depths and sample types are wrong

~/npolar/marine-db$ cat $samples | ndjson-filter 'd.eventDate.startsWith("2012-01-14")' | ndjson-map '[d.gear,d.sampletype]' | sort | uniq -c
     11 ["Multinet 200 µm","Lipids"]
      3 ["Ship CTD","CTD"]

$ cat $samples | ndjson-filter 'd.eventDate.startsWith("2012-01-14")' | ndjson-map '[d.maximumDepthInMeters,d.minimumDepthInMeters]' | sort -nr
[900,600]
[600,300]
[600,200]
[500,0]
[500,0]
[500,0]
[50,0]
[300,50]
[2000,600]
[2000,1800]
[1800,1600]
[1600,1400]
[1400,1200]
[1200,900]