run-tests

#!/bin/bash

set -e -o pipefail -u -x

TEST_INPUTS="multithread-test.wdl.json"

womtool validate -i ${TEST_INPUTS} Dockstore.wdl
#cp test.cosiParams test.neutral.cosiParams test.sweep.cosiParams test_recom.recom get_pop_ids.py runcosi.py remodel_components.py multithread-test.wdl.json Dockstore.wdl /data/ilya-work/sw/cromwell/scripts/docker-compose-mysql/cromwell-executions
#time cromwell run -i ${TEST_INPUTS} -m tmp/test_run.$$.json Dockstore.wdl
#pushd /data/ilya-work/sw/cromwell/scripts/docker-compose-mysql
DEMOG=default_112115_825am__demography.par
TMP_INPUTS="/data/$$.${TEST_INPUTS}"
TMP_DEMOG="/data/$$.${DEMOG}"
gpg --batch --yes --output ${TMP_DEMOG} --decrypt $DEMOG.gpg  
sed s#$DEMOG#$TMP_DEMOG#g ${TEST_INPUTS} > ${TMP_INPUTS}
#oliver submit $PWD/Dockstore.wdl ${TMP_INPUTS}
cromshell submit $PWD/Dockstore.wdl ${TMP_INPUTS}