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full_run.out
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Running model at Fri Sep 18 11:45:23 PDT 2020
numprocs=1
NEURON -- VERSION 7.7.2 7.7 (2b7985ba) 2019-06-20
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2018
See http://neuron.yale.edu/neuron/credits
--------------------------------------------------------------------------
A process has executed an operation involving a call to the
"fork()" system call to create a child process. Open MPI is currently
operating in a condition that could result in memory corruption or
other system errors; your job may hang, crash, or produce silent
data corruption. The use of fork() (or system() or other calls that
create child processes) is strongly discouraged.
The process that invoked fork was:
Local host: [[19568,1],0] (PID 15578)
If you are *absolutely sure* that your application will successfully
and correctly survive a call to fork(), you may disable this warning
by setting the mpi_warn_on_fork MCA parameter to 0.
--------------------------------------------------------------------------
2020-09-18 11:45:26,189 [INFO] Created log file
Additional mechanisms from files
modfiles//bg2pyr.mod modfiles//cad.mod modfiles//CaDynamics.mod modfiles//cadyn.mod modfiles//Ca_HVA.mod modfiles//cal2.mod modfiles//Ca_LVA.mod modfiles//ca.mod modfiles//capool.mod modfiles//cav31.mod modfiles//function_TMonitor.mod modfiles//gabaa.mod modfiles//gap.mod modfiles//Gfluct_new_exc.mod modfiles//Gfluct_new_inh.mod modfiles//halfgap.mod modfiles//h.mod modfiles//Ih.mod modfiles//im.mod modfiles//Im.mod modfiles//Im_v2.mod modfiles//int2int.mod modfiles//int2pyr.mod modfiles//interD2interD_STFD_new.mod modfiles//interD2pyrD_STFD_new.mod modfiles//kadist.mod modfiles//kaprox.mod modfiles//kca.mod modfiles//Kd.mod modfiles//kdrca1DA.mod modfiles//kdrca1.mod modfiles//kdrinter.mod modfiles//kdrinter_WB.mod modfiles//km.mod modfiles//K_P.mod modfiles//K_T.mod modfiles//Kv2like.mod modfiles//Kv3_1.mod modfiles//kv.mod modfiles//leakDA.mod modfiles//leakinter.mod modfiles//leak.mod modfiles//MyExp2Sid.mod modfiles//na12.mod modfiles//na16.mod modfiles//na3DA.mod modfiles//na3.mod modfiles//nainter.mod modfiles//nainter_WB.mod modfiles//na.mod modfiles//nap2.mod modfiles//nap.mod modfiles//Nap.mod modfiles//NaTa.mod modfiles//nat.mod modfiles//NaTs.mod modfiles//NaV.mod modfiles//pyr2int.mod modfiles//pyr2pyr.mod modfiles//pyrD2interD_STFD.mod modfiles//pyrD2pyrD_STFD_new.mod modfiles//sahp.mod modfiles//sahpNE.mod modfiles//shock2pyr.mod modfiles//SK.mod modfiles//tone2pyr.mod modfiles//vecevent.mod modfiles//xtra_imemrec.mod modfiles//xtra.mod
2020-09-18 11:45:26,354 [INFO] Building cells.
2020-09-18 11:45:26,370 [INFO] Building recurrent connections
2020-09-18 11:45:26,554 [INFO] Building virtual cell stimulations for tone_spikes
2020-09-18 11:45:26,575 [INFO] Building virtual cell stimulations for shock_spikes
2020-09-18 11:45:26,620 [INFO] Running simulation for 4000.000 ms with the time step 0.100 ms
2020-09-18 11:45:26,620 [INFO] Starting timestep: 0 at t_sim: 0.000 ms
2020-09-18 11:45:26,620 [INFO] Block save every 5000 steps
2020-09-18 11:45:30,674 [INFO] step:5000 t_sim:500.00 ms
2020-09-18 11:45:34,736 [INFO] step:10000 t_sim:1000.00 ms
2020-09-18 11:45:38,795 [INFO] step:15000 t_sim:1500.00 ms
2020-09-18 11:45:42,858 [INFO] step:20000 t_sim:2000.00 ms
2020-09-18 11:45:46,918 [INFO] step:25000 t_sim:2500.00 ms
2020-09-18 11:45:50,981 [INFO] step:30000 t_sim:3000.00 ms
2020-09-18 11:45:55,036 [INFO] step:35000 t_sim:3500.00 ms
2020-09-18 11:45:59,083 [INFO] step:40000 t_sim:4000.00 ms
2020-09-18 11:45:59,159 [INFO] Simulation completed in 32.54 seconds
/home/latimerb/.local/lib/python3.6/site-packages/h5py/__init__.py:36: FutureWarning: Conversion of the second argument of issubdtype from `float` to `np.floating` is deprecated. In future, it will be treated as `np.float64 == np.dtype(float).type`.
from ._conv import register_converters as _register_converters
>>>
Done running model at Fri Sep 18 11:45:59 PDT 2020