-
Notifications
You must be signed in to change notification settings - Fork 0
/
MVM_gng_3.sh
executable file
·283 lines (251 loc) · 24.8 KB
/
MVM_gng_3.sh
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
#!/bin/bash
# written by Nathan Muncy on 8/11/17
# This script will make a brain mask, run MC simulations, and run an MVM
workDir=/Volumes/Yorick/YAWNS3
grpDir=${workDir}/grpAnalysis
actDir=/Volumes/Yorick/Templates/vold2_mni/priors_ACT
if [ ! -d $grpDir ]; then
mkdir $grpDir
fi
cd $grpDir
## make brain mask
if [ ! -f vold2_mni_brain_mask+tlrc.HEAD ]; then
refScan=${workDir}/Jensenpedisleep041/5_Hour/deconv_gonogo2_blur5_ANTS_resampled+tlrc
cp ${actDir}/Template_BrainCerebellumBinaryMask.nii.gz ${grpDir}/tmp_brain_mask.nii.gz
3dcopy tmp_brain_mask.nii.gz tmp_brain_mask+tlrc
3dfractionize -template $refScan -prefix tmp_brain_mask_resampled -input tmp_brain_mask+tlrc
3dcalc -a tmp_brain_mask_resampled+tlrc -prefix vold2_mni_brain_mask -expr "step(a)"
rm tmp*
fi
## run Monte Carlo simulations
if [ ! -f MCstats.txt ]; then
stats=`3dClustSim -mask vold2_mni_brain_mask+tlrc -fwhm 5 -athr 0.05 -iter 10000 -NN 1 -nodec`
echo "$stats" > MCstats.txt
fi
## run MVM
scan=deconv_GNGvF_blur5_ANTS_resampled+tlrc
out=MVM_DurGoNoGoBMI
mask=vold2_mni_brain_mask+tlrc
if [ ! -f ${out}+tlrc.HEAD ]; then
3dMVM -prefix $out -jobs 6 -mask $mask \
-bsVars "BMI" \
-wsVars "duration*stimtype" \
-num_glt 3 \
-gltLabel 1 dur.stim -gltCode 1 'duration: 1*5_Hour -1*9_Hour stimtype: 1*go -1*nogo' \
-gltLabel 2 dur.bmi -gltCode 2 'duration: 1*5_Hour -1*9_Hour BMI: 1*Hi -1*Lo' \
-gltLabel 3 stim.bmi -gltCode 3 'stimtype: 1*go -1*nogo BMI: 1*Hi -1*Lo' \
-dataTable \
Subj duration stimtype BMI InputFile \
Jensenpedisleep004 5_Hour nogo Lo ${workDir}/JensenPedisleep004/5_Hour/"${scan}[1]" \
Jensenpedisleep004 5_Hour go Lo ${workDir}/JensenPedisleep004/5_Hour/"${scan}[3]" \
Jensenpedisleep004 9_Hour nogo Lo ${workDir}/JensenPedisleep004/9_Hour/"${scan}[1]" \
Jensenpedisleep004 9_Hour go Lo ${workDir}/JensenPedisleep004/9_Hour/"${scan}[3]" \
Jensenpedisleep006 5_Hour nogo Lo ${workDir}/JensenPedisleep006/5_Hour/"${scan}[1]" \
Jensenpedisleep006 5_Hour go Lo ${workDir}/JensenPedisleep006/5_Hour/"${scan}[3]" \
Jensenpedisleep006 9_Hour nogo Lo ${workDir}/JensenPedisleep006/9_Hour/"${scan}[1]" \
Jensenpedisleep006 9_Hour go Lo ${workDir}/JensenPedisleep006/9_Hour/"${scan}[3]" \
Jensenpedisleep007 5_Hour nogo Lo ${workDir}/JensenPedisleep007/5_Hour/"${scan}[1]" \
Jensenpedisleep007 5_Hour go Lo ${workDir}/JensenPedisleep007/5_Hour/"${scan}[3]" \
Jensenpedisleep007 9_Hour nogo Lo ${workDir}/JensenPedisleep007/9_Hour/"${scan}[1]" \
Jensenpedisleep007 9_Hour go Lo ${workDir}/JensenPedisleep007/9_Hour/"${scan}[3]" \
Jensenpedisleep008 5_Hour nogo Lo ${workDir}/JensenPedisleep008/5_Hour/"${scan}[1]" \
Jensenpedisleep008 5_Hour go Lo ${workDir}/JensenPedisleep008/5_Hour/"${scan}[3]" \
Jensenpedisleep008 9_Hour nogo Lo ${workDir}/JensenPedisleep008/9_Hour/"${scan}[1]" \
Jensenpedisleep008 9_Hour go Lo ${workDir}/JensenPedisleep008/9_Hour/"${scan}[3]" \
Jensenpedisleep009 5_Hour nogo Lo ${workDir}/JensenPedisleep009/5_Hour/"${scan}[1]" \
Jensenpedisleep009 5_Hour go Lo ${workDir}/JensenPedisleep009/5_Hour/"${scan}[3]" \
Jensenpedisleep009 9_Hour nogo Lo ${workDir}/JensenPedisleep009/9_Hour/"${scan}[1]" \
Jensenpedisleep009 9_Hour go Lo ${workDir}/JensenPedisleep009/9_Hour/"${scan}[3]" \
Jensenpedisleep010 5_Hour nogo Lo ${workDir}/JensenPedisleep010/5_Hour/"${scan}[1]" \
Jensenpedisleep010 5_Hour go Lo ${workDir}/JensenPedisleep010/5_Hour/"${scan}[3]" \
Jensenpedisleep010 9_Hour nogo Lo ${workDir}/JensenPedisleep010/9_Hour/"${scan}[1]" \
Jensenpedisleep010 9_Hour go Lo ${workDir}/JensenPedisleep010/9_Hour/"${scan}[3]" \
Jensenpedisleep012 5_Hour nogo Lo ${workDir}/JensenPedisleep012/5_Hour/"${scan}[1]" \
Jensenpedisleep012 5_Hour go Lo ${workDir}/JensenPedisleep012/5_Hour/"${scan}[3]" \
Jensenpedisleep012 9_Hour nogo Lo ${workDir}/JensenPedisleep012/9_Hour/"${scan}[1]" \
Jensenpedisleep012 9_Hour go Lo ${workDir}/JensenPedisleep012/9_Hour/"${scan}[3]" \
Jensenpedisleep013 5_Hour nogo Lo ${workDir}/JensenPedisleep013/5_Hour/"${scan}[1]" \
Jensenpedisleep013 5_Hour go Lo ${workDir}/JensenPedisleep013/5_Hour/"${scan}[3]" \
Jensenpedisleep013 9_Hour nogo Lo ${workDir}/JensenPedisleep013/9_Hour/"${scan}[1]" \
Jensenpedisleep013 9_Hour go Lo ${workDir}/JensenPedisleep013/9_Hour/"${scan}[3]" \
Jensenpedisleep014 5_Hour nogo Lo ${workDir}/JensenPedisleep014/5_Hour/"${scan}[1]" \
Jensenpedisleep014 5_Hour go Lo ${workDir}/JensenPedisleep014/5_Hour/"${scan}[3]" \
Jensenpedisleep014 9_Hour nogo Lo ${workDir}/JensenPedisleep014/9_Hour/"${scan}[1]" \
Jensenpedisleep014 9_Hour go Lo ${workDir}/JensenPedisleep014/9_Hour/"${scan}[3]" \
Jensenpedisleep015 5_Hour nogo Lo ${workDir}/JensenPedisleep015/5_Hour/"${scan}[1]" \
Jensenpedisleep015 5_Hour go Lo ${workDir}/JensenPedisleep015/5_Hour/"${scan}[3]" \
Jensenpedisleep015 9_Hour nogo Lo ${workDir}/JensenPedisleep015/9_Hour/"${scan}[1]" \
Jensenpedisleep015 9_Hour go Lo ${workDir}/JensenPedisleep015/9_Hour/"${scan}[3]" \
Jensenpedisleep017 5_Hour nogo Lo ${workDir}/JensenPedisleep017/5_Hour/"${scan}[1]" \
Jensenpedisleep017 5_Hour go Lo ${workDir}/JensenPedisleep017/5_Hour/"${scan}[3]" \
Jensenpedisleep017 9_Hour nogo Lo ${workDir}/JensenPedisleep017/9_Hour/"${scan}[1]" \
Jensenpedisleep017 9_Hour go Lo ${workDir}/JensenPedisleep017/9_Hour/"${scan}[3]" \
Jensenpedisleep019 5_Hour nogo Lo ${workDir}/JensenPedisleep019/5_Hour/"${scan}[1]" \
Jensenpedisleep019 5_Hour go Lo ${workDir}/JensenPedisleep019/5_Hour/"${scan}[3]" \
Jensenpedisleep019 9_Hour nogo Lo ${workDir}/JensenPedisleep019/9_Hour/"${scan}[1]" \
Jensenpedisleep019 9_Hour go Lo ${workDir}/JensenPedisleep019/9_Hour/"${scan}[3]" \
Jensenpedisleep020 5_Hour nogo Lo ${workDir}/JensenPedisleep020/5_Hour/"${scan}[1]" \
Jensenpedisleep020 5_Hour go Lo ${workDir}/JensenPedisleep020/5_Hour/"${scan}[3]" \
Jensenpedisleep020 9_Hour nogo Lo ${workDir}/JensenPedisleep020/9_Hour/"${scan}[1]" \
Jensenpedisleep020 9_Hour go Lo ${workDir}/JensenPedisleep020/9_Hour/"${scan}[3]" \
Jensenpedisleep021 5_Hour nogo Lo ${workDir}/JensenPedisleep021/5_Hour/"${scan}[1]" \
Jensenpedisleep021 5_Hour go Lo ${workDir}/JensenPedisleep021/5_Hour/"${scan}[3]" \
Jensenpedisleep021 9_Hour nogo Lo ${workDir}/JensenPedisleep021/9_Hour/"${scan}[1]" \
Jensenpedisleep021 9_Hour go Lo ${workDir}/JensenPedisleep021/9_Hour/"${scan}[3]" \
Jensenpedisleep022 5_Hour nogo Lo ${workDir}/JensenPedisleep022/5_Hour/"${scan}[1]" \
Jensenpedisleep022 5_Hour go Lo ${workDir}/JensenPedisleep022/5_Hour/"${scan}[3]" \
Jensenpedisleep022 9_Hour nogo Lo ${workDir}/JensenPedisleep022/9_Hour/"${scan}[1]" \
Jensenpedisleep022 9_Hour go Lo ${workDir}/JensenPedisleep022/9_Hour/"${scan}[3]" \
Jensenpedisleep023 5_Hour nogo Lo ${workDir}/JensenPedisleep023/5_Hour/"${scan}[1]" \
Jensenpedisleep023 5_Hour go Lo ${workDir}/JensenPedisleep023/5_Hour/"${scan}[3]" \
Jensenpedisleep023 9_Hour nogo Lo ${workDir}/JensenPedisleep023/9_Hour/"${scan}[1]" \
Jensenpedisleep023 9_Hour go Lo ${workDir}/JensenPedisleep023/9_Hour/"${scan}[3]" \
Jensenpedisleep024 5_Hour nogo Lo ${workDir}/JensenPedisleep024/5_Hour/"${scan}[1]" \
Jensenpedisleep024 5_Hour go Lo ${workDir}/JensenPedisleep024/5_Hour/"${scan}[3]" \
Jensenpedisleep024 9_Hour nogo Lo ${workDir}/JensenPedisleep024/9_Hour/"${scan}[1]" \
Jensenpedisleep024 9_Hour go Lo ${workDir}/JensenPedisleep024/9_Hour/"${scan}[3]" \
Jensenpedisleep025 5_Hour nogo Lo ${workDir}/JensenPedisleep025/5_Hour/"${scan}[1]" \
Jensenpedisleep025 5_Hour go Lo ${workDir}/JensenPedisleep025/5_Hour/"${scan}[3]" \
Jensenpedisleep025 9_Hour nogo Lo ${workDir}/JensenPedisleep025/9_Hour/"${scan}[1]" \
Jensenpedisleep025 9_Hour go Lo ${workDir}/JensenPedisleep025/9_Hour/"${scan}[3]" \
Jensenpedisleep027 5_Hour nogo Lo ${workDir}/JensenPedisleep027/5_Hour/"${scan}[1]" \
Jensenpedisleep027 5_Hour go Lo ${workDir}/JensenPedisleep027/5_Hour/"${scan}[3]" \
Jensenpedisleep027 9_Hour nogo Lo ${workDir}/JensenPedisleep027/9_Hour/"${scan}[1]" \
Jensenpedisleep027 9_Hour go Lo ${workDir}/JensenPedisleep027/9_Hour/"${scan}[3]" \
Jensenpedisleep028 5_Hour nogo Lo ${workDir}/JensenPedisleep028/5_Hour/"${scan}[1]" \
Jensenpedisleep028 5_Hour go Lo ${workDir}/JensenPedisleep028/5_Hour/"${scan}[3]" \
Jensenpedisleep028 9_Hour nogo Lo ${workDir}/JensenPedisleep028/9_Hour/"${scan}[1]" \
Jensenpedisleep028 9_Hour go Lo ${workDir}/JensenPedisleep028/9_Hour/"${scan}[3]" \
Jensenpedisleep029 5_Hour nogo Lo ${workDir}/JensenPedisleep029/5_Hour/"${scan}[1]" \
Jensenpedisleep029 5_Hour go Lo ${workDir}/JensenPedisleep029/5_Hour/"${scan}[3]" \
Jensenpedisleep029 9_Hour nogo Lo ${workDir}/JensenPedisleep029/9_Hour/"${scan}[1]" \
Jensenpedisleep029 9_Hour go Lo ${workDir}/JensenPedisleep029/9_Hour/"${scan}[3]" \
Jensenpedisleep030 5_Hour nogo Lo ${workDir}/JensenPedisleep030/5_Hour/"${scan}[1]" \
Jensenpedisleep030 5_Hour go Lo ${workDir}/JensenPedisleep030/5_Hour/"${scan}[3]" \
Jensenpedisleep030 9_Hour nogo Lo ${workDir}/JensenPedisleep030/9_Hour/"${scan}[1]" \
Jensenpedisleep030 9_Hour go Lo ${workDir}/JensenPedisleep030/9_Hour/"${scan}[3]" \
Jensenpedisleep032 5_Hour nogo Hi ${workDir}/Jensenpedisleep032/5_Hour/"${scan}[1]" \
Jensenpedisleep032 5_Hour go Hi ${workDir}/Jensenpedisleep032/5_Hour/"${scan}[3]" \
Jensenpedisleep032 9_Hour nogo Hi ${workDir}/Jensenpedisleep032/9_Hour/"${scan}[1]" \
Jensenpedisleep032 9_Hour go Hi ${workDir}/Jensenpedisleep032/9_Hour/"${scan}[3]" \
Jensenpedisleep033 5_Hour nogo Lo ${workDir}/Jensenpedisleep033/5_Hour/"${scan}[1]" \
Jensenpedisleep033 5_Hour go Lo ${workDir}/Jensenpedisleep033/5_Hour/"${scan}[3]" \
Jensenpedisleep033 9_Hour nogo Lo ${workDir}/Jensenpedisleep033/9_Hour/"${scan}[1]" \
Jensenpedisleep033 9_Hour go Lo ${workDir}/Jensenpedisleep033/9_Hour/"${scan}[3]" \
Jensenpedisleep034 5_Hour nogo Lo ${workDir}/Jensenpedisleep034/5_Hour/"${scan}[1]" \
Jensenpedisleep034 5_Hour go Lo ${workDir}/Jensenpedisleep034/5_Hour/"${scan}[3]" \
Jensenpedisleep034 9_Hour nogo Lo ${workDir}/Jensenpedisleep034/9_Hour/"${scan}[1]" \
Jensenpedisleep034 9_Hour go Lo ${workDir}/Jensenpedisleep034/9_Hour/"${scan}[3]" \
Jensenpedisleep035 5_Hour nogo Lo ${workDir}/Jensenpedisleep035/5_Hour/"${scan}[1]" \
Jensenpedisleep035 5_Hour go Lo ${workDir}/Jensenpedisleep035/5_Hour/"${scan}[3]" \
Jensenpedisleep035 9_Hour nogo Lo ${workDir}/Jensenpedisleep035/9_Hour/"${scan}[1]" \
Jensenpedisleep035 9_Hour go Lo ${workDir}/Jensenpedisleep035/9_Hour/"${scan}[3]" \
Jensenpedisleep036 5_Hour nogo Lo ${workDir}/Jensenpedisleep036/5_Hour/"${scan}[1]" \
Jensenpedisleep036 5_Hour go Lo ${workDir}/Jensenpedisleep036/5_Hour/"${scan}[3]" \
Jensenpedisleep036 9_Hour nogo Lo ${workDir}/Jensenpedisleep036/9_Hour/"${scan}[1]" \
Jensenpedisleep036 9_Hour go Lo ${workDir}/Jensenpedisleep036/9_Hour/"${scan}[3]" \
Jensenpedisleep037 5_Hour nogo Hi ${workDir}/Jensenpedisleep037/5_Hour/"${scan}[1]" \
Jensenpedisleep037 5_Hour go Hi ${workDir}/Jensenpedisleep037/5_Hour/"${scan}[3]" \
Jensenpedisleep037 9_Hour nogo Hi ${workDir}/Jensenpedisleep037/9_Hour/"${scan}[1]" \
Jensenpedisleep037 9_Hour go Hi ${workDir}/Jensenpedisleep037/9_Hour/"${scan}[3]" \
Jensenpedisleep038 5_Hour nogo Hi ${workDir}/Jensenpedisleep038/5_Hour/"${scan}[1]" \
Jensenpedisleep038 5_Hour go Hi ${workDir}/Jensenpedisleep038/5_Hour/"${scan}[3]" \
Jensenpedisleep038 9_Hour nogo Hi ${workDir}/Jensenpedisleep038/9_Hour/"${scan}[1]" \
Jensenpedisleep038 9_Hour go Hi ${workDir}/Jensenpedisleep038/9_Hour/"${scan}[3]" \
Jensenpedisleep041 5_Hour nogo Hi ${workDir}/Jensenpedisleep041/5_Hour/"${scan}[1]" \
Jensenpedisleep041 5_Hour go Hi ${workDir}/Jensenpedisleep041/5_Hour/"${scan}[3]" \
Jensenpedisleep041 9_Hour nogo Hi ${workDir}/Jensenpedisleep041/9_Hour/"${scan}[1]" \
Jensenpedisleep041 9_Hour go Hi ${workDir}/Jensenpedisleep041/9_Hour/"${scan}[3]" \
Jensenpedisleep042 5_Hour nogo Hi ${workDir}/Jensenpedisleep042/5_Hour/"${scan}[1]" \
Jensenpedisleep042 5_Hour go Hi ${workDir}/Jensenpedisleep042/5_Hour/"${scan}[3]" \
Jensenpedisleep042 9_Hour nogo Hi ${workDir}/Jensenpedisleep042/9_Hour/"${scan}[1]" \
Jensenpedisleep042 9_Hour go Hi ${workDir}/Jensenpedisleep042/9_Hour/"${scan}[3]" \
Jensenpedisleep043 5_Hour nogo Hi ${workDir}/Jensenpedisleep043/5_Hour/"${scan}[1]" \
Jensenpedisleep043 5_Hour go Hi ${workDir}/Jensenpedisleep043/5_Hour/"${scan}[3]" \
Jensenpedisleep043 9_Hour nogo Hi ${workDir}/Jensenpedisleep043/9_Hour/"${scan}[1]" \
Jensenpedisleep043 9_Hour go Hi ${workDir}/Jensenpedisleep043/9_Hour/"${scan}[3]" \
Jensenpedisleep044 5_Hour nogo Hi ${workDir}/Jensenpedisleep044/5_Hour/"${scan}[1]" \
Jensenpedisleep044 5_Hour go Hi ${workDir}/Jensenpedisleep044/5_Hour/"${scan}[3]" \
Jensenpedisleep044 9_Hour nogo Hi ${workDir}/Jensenpedisleep044/9_Hour/"${scan}[1]" \
Jensenpedisleep044 9_Hour go Hi ${workDir}/Jensenpedisleep044/9_Hour/"${scan}[3]" \
Jensenpedisleep045 5_Hour nogo Lo ${workDir}/Jensenpedisleep045/5_Hour/"${scan}[1]" \
Jensenpedisleep045 5_Hour go Lo ${workDir}/Jensenpedisleep045/5_Hour/"${scan}[3]" \
Jensenpedisleep045 9_Hour nogo Lo ${workDir}/Jensenpedisleep045/9_Hour/"${scan}[1]" \
Jensenpedisleep045 9_Hour go Lo ${workDir}/Jensenpedisleep045/9_Hour/"${scan}[3]" \
Jensenpedisleep046 5_Hour nogo Hi ${workDir}/Jensenpedisleep046/5_Hour/"${scan}[1]" \
Jensenpedisleep046 5_Hour go Hi ${workDir}/Jensenpedisleep046/5_Hour/"${scan}[3]" \
Jensenpedisleep046 9_Hour nogo Hi ${workDir}/Jensenpedisleep046/9_Hour/"${scan}[1]" \
Jensenpedisleep046 9_Hour go Hi ${workDir}/Jensenpedisleep046/9_Hour/"${scan}[3]" \
Jensenpedisleep047 5_Hour nogo Hi ${workDir}/Jensenpedisleep047/5_Hour/"${scan}[1]" \
Jensenpedisleep047 5_Hour go Hi ${workDir}/Jensenpedisleep047/5_Hour/"${scan}[3]" \
Jensenpedisleep047 9_Hour nogo Hi ${workDir}/Jensenpedisleep047/9_Hour/"${scan}[1]" \
Jensenpedisleep047 9_Hour go Hi ${workDir}/Jensenpedisleep047/9_Hour/"${scan}[3]" \
Jensenpedisleep048 5_Hour nogo Hi ${workDir}/Jensenpedisleep048/5_Hour/"${scan}[1]" \
Jensenpedisleep048 5_Hour go Hi ${workDir}/Jensenpedisleep048/5_Hour/"${scan}[3]" \
Jensenpedisleep048 9_Hour nogo Hi ${workDir}/Jensenpedisleep048/9_Hour/"${scan}[1]" \
Jensenpedisleep048 9_Hour go Hi ${workDir}/Jensenpedisleep048/9_Hour/"${scan}[3]" \
Jensenpedisleep049 5_Hour nogo Hi ${workDir}/Jensenpedisleep049/5_Hour/"${scan}[1]" \
Jensenpedisleep049 5_Hour go Hi ${workDir}/Jensenpedisleep049/5_Hour/"${scan}[3]" \
Jensenpedisleep049 9_Hour nogo Hi ${workDir}/Jensenpedisleep049/9_Hour/"${scan}[1]" \
Jensenpedisleep049 9_Hour go Hi ${workDir}/Jensenpedisleep049/9_Hour/"${scan}[3]" \
Jensenpedisleep050 5_Hour nogo Hi ${workDir}/Jensenpedisleep050/5_Hour/"${scan}[1]" \
Jensenpedisleep050 5_Hour go Hi ${workDir}/Jensenpedisleep050/5_Hour/"${scan}[3]" \
Jensenpedisleep050 9_Hour nogo Hi ${workDir}/Jensenpedisleep050/9_Hour/"${scan}[1]" \
Jensenpedisleep050 9_Hour go Hi ${workDir}/Jensenpedisleep050/9_Hour/"${scan}[3]" \
Jensenpedisleep051 5_Hour nogo Hi ${workDir}/Jensenpedisleep051/5_Hour/"${scan}[1]" \
Jensenpedisleep051 5_Hour go Hi ${workDir}/Jensenpedisleep051/5_Hour/"${scan}[3]" \
Jensenpedisleep051 9_Hour nogo Hi ${workDir}/Jensenpedisleep051/9_Hour/"${scan}[1]" \
Jensenpedisleep051 9_Hour go Hi ${workDir}/Jensenpedisleep051/9_Hour/"${scan}[3]" \
Jensenpedisleep052 5_Hour nogo Hi ${workDir}/Jensenpedisleep052/5_Hour/"${scan}[1]" \
Jensenpedisleep052 5_Hour go Hi ${workDir}/Jensenpedisleep052/5_Hour/"${scan}[3]" \
Jensenpedisleep052 9_Hour nogo Hi ${workDir}/Jensenpedisleep052/9_Hour/"${scan}[1]" \
Jensenpedisleep052 9_Hour go Hi ${workDir}/Jensenpedisleep052/9_Hour/"${scan}[3]" \
Jensenpedisleep053 5_Hour nogo Hi ${workDir}/Jensenpedisleep053/5_Hour/"${scan}[1]" \
Jensenpedisleep053 5_Hour go Hi ${workDir}/Jensenpedisleep053/5_Hour/"${scan}[3]" \
Jensenpedisleep053 9_Hour nogo Hi ${workDir}/Jensenpedisleep053/9_Hour/"${scan}[1]" \
Jensenpedisleep053 9_Hour go Hi ${workDir}/Jensenpedisleep053/9_Hour/"${scan}[3]" \
Jensenpedisleep055 5_Hour nogo Hi ${workDir}/Jensenpedisleep055/5_Hour/"${scan}[1]" \
Jensenpedisleep055 5_Hour go Hi ${workDir}/Jensenpedisleep055/5_Hour/"${scan}[3]" \
Jensenpedisleep055 9_Hour nogo Hi ${workDir}/Jensenpedisleep055/9_Hour/"${scan}[1]" \
Jensenpedisleep055 9_Hour go Hi ${workDir}/Jensenpedisleep055/9_Hour/"${scan}[3]" \
Jensenpedisleep056 5_Hour nogo Hi ${workDir}/Jensenpedisleep056/5_Hour/"${scan}[1]" \
Jensenpedisleep056 5_Hour go Hi ${workDir}/Jensenpedisleep056/5_Hour/"${scan}[3]" \
Jensenpedisleep056 9_Hour nogo Hi ${workDir}/Jensenpedisleep056/9_Hour/"${scan}[1]" \
Jensenpedisleep056 9_Hour go Hi ${workDir}/Jensenpedisleep056/9_Hour/"${scan}[3]" \
Jensenpedisleep058 5_Hour nogo Hi ${workDir}/Jensenpedisleep058/5_Hour/"${scan}[1]" \
Jensenpedisleep058 5_Hour go Hi ${workDir}/Jensenpedisleep058/5_Hour/"${scan}[3]" \
Jensenpedisleep058 9_Hour nogo Hi ${workDir}/Jensenpedisleep058/9_Hour/"${scan}[1]" \
Jensenpedisleep058 9_Hour go Hi ${workDir}/Jensenpedisleep058/9_Hour/"${scan}[3]" \
Jensenpedisleep059 5_Hour nogo Hi ${workDir}/Jensenpedisleep059/5_Hour/"${scan}[1]" \
Jensenpedisleep059 5_Hour go Hi ${workDir}/Jensenpedisleep059/5_Hour/"${scan}[3]" \
Jensenpedisleep059 9_Hour nogo Hi ${workDir}/Jensenpedisleep059/9_Hour/"${scan}[1]" \
Jensenpedisleep059 9_Hour go Hi ${workDir}/Jensenpedisleep059/9_Hour/"${scan}[3]" \
Jensenpedisleep060 5_Hour nogo Lo ${workDir}/Jensenpedisleep060/5_Hour/"${scan}[1]" \
Jensenpedisleep060 5_Hour go Lo ${workDir}/Jensenpedisleep060/5_Hour/"${scan}[3]" \
Jensenpedisleep060 9_Hour nogo Lo ${workDir}/Jensenpedisleep060/9_Hour/"${scan}[1]" \
Jensenpedisleep060 9_Hour go Lo ${workDir}/Jensenpedisleep060/9_Hour/"${scan}[3]" \
Jensenpedisleep061 5_Hour nogo Hi ${workDir}/Jensenpedisleep061/5_Hour/"${scan}[1]" \
Jensenpedisleep061 5_Hour go Hi ${workDir}/Jensenpedisleep061/5_Hour/"${scan}[3]" \
Jensenpedisleep061 9_Hour nogo Hi ${workDir}/Jensenpedisleep061/9_Hour/"${scan}[1]" \
Jensenpedisleep061 9_Hour go Hi ${workDir}/Jensenpedisleep061/9_Hour/"${scan}[3]" \
Jensenpedisleep063 5_Hour nogo Hi ${workDir}/Jensenpedisleep063/5_Hour/"${scan}[1]" \
Jensenpedisleep063 5_Hour go Hi ${workDir}/Jensenpedisleep063/5_Hour/"${scan}[3]" \
Jensenpedisleep063 9_Hour nogo Hi ${workDir}/Jensenpedisleep063/9_Hour/"${scan}[1]" \
Jensenpedisleep063 9_Hour go Hi ${workDir}/Jensenpedisleep063/9_Hour/"${scan}[3]" \
Jensenpedisleep064 5_Hour nogo Hi ${workDir}/Jensenpedisleep064/5_Hour/"${scan}[1]" \
Jensenpedisleep064 5_Hour go Hi ${workDir}/Jensenpedisleep064/5_Hour/"${scan}[3]" \
Jensenpedisleep064 9_Hour nogo Hi ${workDir}/Jensenpedisleep064/9_Hour/"${scan}[1]" \
Jensenpedisleep064 9_Hour go Hi ${workDir}/Jensenpedisleep064/9_Hour/"${scan}[3]" \
Jensenpedisleep066 5_Hour nogo Hi ${workDir}/Jensenpedisleep066/5_Hour/"${scan}[1]" \
Jensenpedisleep066 5_Hour go Hi ${workDir}/Jensenpedisleep066/5_Hour/"${scan}[3]" \
Jensenpedisleep066 9_Hour nogo Hi ${workDir}/Jensenpedisleep066/9_Hour/"${scan}[1]" \
Jensenpedisleep066 9_Hour go Hi ${workDir}/Jensenpedisleep066/9_Hour/"${scan}[3]" \
Jensenpedisleep067 5_Hour nogo Hi ${workDir}/Jensenpedisleep067/5_Hour/"${scan}[1]" \
Jensenpedisleep067 5_Hour go Hi ${workDir}/Jensenpedisleep067/5_Hour/"${scan}[3]" \
Jensenpedisleep067 9_Hour nogo Hi ${workDir}/Jensenpedisleep067/9_Hour/"${scan}[1]" \
Jensenpedisleep067 9_Hour go Hi ${workDir}/Jensenpedisleep067/9_Hour/"${scan}[3]" \
Jensenpedisleep068 5_Hour nogo Lo ${workDir}/Jensenpedisleep068/5_Hour/"${scan}[1]" \
Jensenpedisleep068 5_Hour go Lo ${workDir}/Jensenpedisleep068/5_Hour/"${scan}[3]" \
Jensenpedisleep068 9_Hour nogo Lo ${workDir}/Jensenpedisleep068/9_Hour/"${scan}[1]" \
Jensenpedisleep068 9_Hour go Lo ${workDir}/Jensenpedisleep068/9_Hour/"${scan}[3]"
fi