From 47448a8780cd08daf378dbcb6f16018508b0fbcc Mon Sep 17 00:00:00 2001 From: Eli Holmes Date: Wed, 30 Oct 2024 18:05:48 -0700 Subject: [PATCH] update setup --- _quarto.yml | 3 +- content/02-jupyterhub-setup-r.qmd | 10 +++--- docs/coc.html | 7 ++-- docs/content/01-intro-to-jupyterhub.html | 7 ++-- docs/content/01-repro-reports.html | 7 ++-- docs/content/02-git-jupyter.html | 11 +++--- docs/content/02-git-rstudio.html | 11 +++--- docs/content/02-git.html | 11 +++--- docs/content/02-jupyterhub-setup-r.html | 20 ++++++----- docs/content/02-local-setup-python.html | 7 ++-- docs/content/02-local-setup-r.html | 17 ++++++---- docs/content/02-rstudio.html | 7 ++-- docs/content/index.html | 7 ++-- docs/index.html | 7 ++-- docs/schedule.html | 13 ++++--- docs/search.json | 18 ++++++++-- docs/setup.html | 43 +++++++++++++++++------- docs/sitemap.xml | 4 +-- docs/support.html | 7 ++-- docs/team.html | 7 ++-- docs/tutorials/tutorial-1.html | 7 ++-- docs/tutorials/tutorial-2.html | 7 ++-- docs/tutorials/tutorial-3.html | 7 ++-- docs/tutorials/tutorial-4.html | 7 ++-- setup.qmd | 11 ++++-- 25 files changed, 178 insertions(+), 85 deletions(-) diff --git a/_quarto.yml b/_quarto.yml index 9d623c7..4ca870a 100644 --- a/_quarto.yml +++ b/_quarto.yml @@ -36,7 +36,8 @@ website: - schedule.md - section: Set-up contents: - - set-up.qmd + - text: Set up info + href: setup.qmd - text: R and RStudio on your computer href: content/02-local-setup-r.qmd - text: R and RStudion on the JupyterHub diff --git a/content/02-jupyterhub-setup-r.qmd b/content/02-jupyterhub-setup-r.qmd index f50118d..240dc03 100644 --- a/content/02-jupyterhub-setup-r.qmd +++ b/content/02-jupyterhub-setup-r.qmd @@ -8,19 +8,17 @@ Everything you need is installed for you. Note, before you can log in, we will n * Click Start Server and accept defaults * Click the RStudio button. If you don't see it, click the blue button in the top left to open a new 'Launcher' window. -![](content/img/jhub-launcher.png) +![](https://nmfs-opensci.github.io/Quarto-Workshop-2024/content/img/jhub-launcher.png) ## Access to the JupyterHub ### GitHub username -* Create a GitHub account (if you don’t already have one) at . Advice for choosing a GitHub username: this is a professional username that you will use in work settings. GitHub accounts are not anonymous; this is for sharing work. Using your real name is common. -* Write down your username and password; you will need to log in during the course! -* Here is [a video](https://www.youtube.com/watch?v=nHXw4mGoqiE) showing the whole process +* Log into GitHub.com. Authentication to the JupyterHub uses your username and being a member of the NMFS Openscapes GitHub org. ### Get on JupyterHub -Once you have submitted your GitHub username and have been accepted as a member on the nmfs-openscapes organization, you can log-into the JupyterHub. +Once you have submitted your GitHub username and have been accepted as a member on the nmfs-openscapes organization, you can log-into the JupyterHub. For those who did the GitHub clinic, you should be good to go. @@ -28,3 +26,5 @@ Once you have submitted your GitHub username and have been accepted as a member * home directory is yours and no one else can see it. * To share files, you can connect to a GitHub repository or use the `shared` directory. Everyone can read and write to this directory. Please don't delete content that is not your own. + +This is a platform for training. Please do not put confidential info on here. diff --git a/docs/coc.html b/docs/coc.html index 723a41a..53fabee 100644 --- a/docs/coc.html +++ b/docs/coc.html @@ -172,8 +172,11 @@