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README.md

Haplotype Frequency Curation Service Perl Client

Required Modules

Install the following Perl libraries.

  • Module::Find
  • URI::Query
  • Log::Any
  • Module::Runtime
  • Class::Singleton
  • Date::Parse
  • DateTime
  • Moose::Role
  • LWP::UserAgent
  • Class::Accessor
  • JSON

Install API

Generate and build the API. The current client was tested with the swagger generator version 2.3.1.

For macOS

Requires the swagger-codegen tool from homebrew. May require sudo.

sudo make

For Windows

Using the powershell:

Invoke-WebRequest -OutFile swagger-codegen-cli.jar http://central.maven.org/maven2/io/swagger/swagger-codegen-cli/2.3.1/swagger-codegen-cli-2.3.1.jar
java -jar swagger-codegen-cli.jar generate --lang perl --input-spec ..\..\curation-swagger-spec.yaml

Test the API

Create a sample population.

perl Population-client.pl

Push a frequency file to local instance of Phycus

perl HFCuS-client.pl --local --action push data/US_CAU.freqs

See all the submissions

perl HFCuS-client.pl --local --action=get_all

Get the frequency for 1 submission.

perl HFCuS-client.pl --local --action=get_sub -sub 1