diff --git a/NAMESPACE b/NAMESPACE index 493c08ea1..12e12eda8 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -115,6 +115,7 @@ S3method(vpc,nlmixrPosthoc) S3method(vpc,nlmixrSaem) S3method(vpc,nlmixrVpc) S3method(vpc,saemFit) +S3method(vpc,ui) export("%>%") export(.nmGetData) export(.protectSaem) @@ -351,7 +352,9 @@ importFrom(stats,start) importFrom(stats,terms) importFrom(stats,time) importFrom(stats,var) +importFrom(utils,.DollarNames) importFrom(utils,assignInMyNamespace) +importFrom(utils,capture.output) importFrom(utils,getFromNamespace) importFrom(utils,head) importFrom(utils,sessionInfo) diff --git a/R/complete.R b/R/complete.R index 2e2133348..3fb442313 100644 --- a/R/complete.R +++ b/R/complete.R @@ -1,3 +1,4 @@ +##'@importFrom utils .DollarNames ##'@export .DollarNames.nlmixrBounds <- function(x, pattern){ grep(pattern, diff --git a/R/foceiFit.R b/R/foceiFit.R index fdba17d70..74510de05 100644 --- a/R/foceiFit.R +++ b/R/foceiFit.R @@ -3251,7 +3251,7 @@ setOfv <- function(x, type){ } } - +##' @importFrom utils capture.output .captureOutput <- function (expr, envir = parent.frame()) { eval({ .file <- rawConnection(raw(0L), open = "w") diff --git a/R/reexports.R b/R/reexports.R index 34eb67d07..777b5c521 100644 --- a/R/reexports.R +++ b/R/reexports.R @@ -208,8 +208,6 @@ RxODE::rxParam ##'@export RxODE::et - - ##' @importFrom huxtable as_hux ##' @export huxtable::as_hux diff --git a/R/vpc.ui.R b/R/vpc.ui.R index 20993cb4b..b5582e1b7 100644 --- a/R/vpc.ui.R +++ b/R/vpc.ui.R @@ -256,8 +256,8 @@ vpc.nlmixrVpc <- function(sim, ...){ } ##' @rdname vpc_ui -##' @S3method vpc ui ##' @export vpc.ui +##' @rawNamespace S3method(vpc,ui) vpc.ui <- function(sim, ...){ vpc_ui(fit=sim, ...); } diff --git a/man/foceiControl.Rd b/man/foceiControl.Rd index 9c692f121..b70f288fb 100644 --- a/man/foceiControl.Rd +++ b/man/foceiControl.Rd @@ -155,8 +155,6 @@ optimization.} solving, but allows user Jacobian specification. \item \code{"dop853"} -- DOP853 solver. Does not support parallel thread-based solving nor user Jacobain specification -\item \code{"indLin"} -- Solving through inductive linearization. The RxODE dll - must be setup specially to use this solving routine. }} \item{transitAbs}{boolean indicating if this is a transit diff --git a/man/nlmixrPrint.Rd b/man/nlmixrPrint.Rd index 166f64cd7..b5c21bb73 100644 --- a/man/nlmixrPrint.Rd +++ b/man/nlmixrPrint.Rd @@ -13,8 +13,7 @@ nlmixrPrint(x, ...) } \description{ This allows the suppressMessages to work on print functions. This -captures the output via R.Util's captureOutput function and then -sends it through the message routine. +captures the output function sends it through the message routine. } \details{ catpureOutput was used since it is much faster than the internal diff --git a/man/nlmixrSim.Rd b/man/nlmixrSim.Rd index d076eed51..f5b20230a 100644 --- a/man/nlmixrSim.Rd +++ b/man/nlmixrSim.Rd @@ -95,8 +95,6 @@ variable by 2.} solving, but allows user Jacobian specification. \item \code{"dop853"} -- DOP853 solver. Does not support parallel thread-based solving nor user Jacobain specification -\item \code{"indLin"} -- Solving through inductive linearization. The RxODE dll - must be setup specially to use this solving routine. }} \item{transitAbs}{boolean indicating if this is a transit diff --git a/man/saemControl.Rd b/man/saemControl.Rd index 85e8df15f..895f2d1bb 100644 --- a/man/saemControl.Rd +++ b/man/saemControl.Rd @@ -75,8 +75,6 @@ achieved. This is also used in the solved linear model to check solving, but allows user Jacobian specification. \item \code{"dop853"} -- DOP853 solver. Does not support parallel thread-based solving nor user Jacobain specification -\item \code{"indLin"} -- Solving through inductive linearization. The RxODE dll - must be setup specially to use this solving routine. }} \item{transitAbs}{boolean indicating if this is a transit