From 3592d97e445300c5ee272868526d7ac8cb08780e Mon Sep 17 00:00:00 2001 From: Fidler Date: Mon, 21 May 2018 12:58:31 -0500 Subject: [PATCH] Update name-space/documentation --- NAMESPACE | 1 + man/reexports.Rd | 6 ++---- man/vpc_nlmixr_nlme.Rd | 4 +--- man/vpc_saemFit.Rd | 2 +- man/vpc_ui.Rd | 2 +- 5 files changed, 6 insertions(+), 9 deletions(-) diff --git a/NAMESPACE b/NAMESPACE index d44b2d606..2bd09cb8e 100644 --- a/NAMESPACE +++ b/NAMESPACE @@ -79,6 +79,7 @@ S3method(tail,focei.fit) S3method(traceplot,focei.fit) S3method(varWeights,nlmixr_nlme) S3method(vcov,focei.fit) +S3method(vpc,default) S3method(vpc,nlmixr.ui.focei) S3method(vpc,nlmixr.ui.nlme) S3method(vpc,nlmixr.ui.saem) diff --git a/man/reexports.Rd b/man/reexports.Rd index 360b1cb2d..ca37ee98d 100644 --- a/man/reexports.Rd +++ b/man/reexports.Rd @@ -1,13 +1,11 @@ % Generated by roxygen2: do not edit by hand -% Please edit documentation in R/simulate.R, R/vpc.R, R/vpc.ui.R +% Please edit documentation in R/simulate.R, R/vpc.ui.R \docType{import} \name{reexports} \alias{reexports} \alias{rxSolve} \alias{reexports} \alias{vpc} -\alias{reexports} -\alias{vpc} \title{Objects exported from other packages} \keyword{internal} \description{ @@ -17,6 +15,6 @@ below to see their documentation. \describe{ \item{RxODE}{\code{\link[RxODE]{rxSolve}}} - \item{vpc}{\code{\link[vpc]{vpc}}, \code{\link[vpc]{vpc}}} + \item{vpc}{\code{\link[vpc]{vpc}}} }} diff --git a/man/vpc_nlmixr_nlme.Rd b/man/vpc_nlmixr_nlme.Rd index 134440903..087b100ef 100644 --- a/man/vpc_nlmixr_nlme.Rd +++ b/man/vpc_nlmixr_nlme.Rd @@ -16,9 +16,7 @@ vpc_nlmixr_nlme(fit, nsim = 100, condition = NULL) \item{condition}{conditional variable} -\item{sim}{this is usually a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}. However it can also be an object like a nlmixr or xpose object} - -\item{...}{Other arguments sent to other methods (like xpose or nlmixr); Note these arguments are not used in the default vpc and are ignored by the default method.} +\item{sim}{a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}} } \description{ Do visual predictive check (VPC) plots for nlme-based non-linear mixed effect models diff --git a/man/vpc_saemFit.Rd b/man/vpc_saemFit.Rd index 10184c83d..152929719 100644 --- a/man/vpc_saemFit.Rd +++ b/man/vpc_saemFit.Rd @@ -20,7 +20,7 @@ vpc_saemFit(fit, dat, nsim = 100, by = NULL, ...) \item{...}{Other arguments sent to \code{\link[vpc:vpc]{vpc_vpc}}} -\item{sim}{this is usually a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}. However it can also be an object like a nlmixr or xpose object} +\item{sim}{a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}} } \value{ vpc object from the \code{\link[vpc:vpc]{vpc_vpc}} package diff --git a/man/vpc_ui.Rd b/man/vpc_ui.Rd index b6afe9bc7..e06a49406 100644 --- a/man/vpc_ui.Rd +++ b/man/vpc_ui.Rd @@ -94,7 +94,7 @@ parameters.} solving nor user Jacobain specification }} -\item{sim}{this is usually a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}. However it can also be an object like a nlmixr or xpose object} +\item{sim}{a data.frame with observed data, containing the independent and dependent variable, a column indicating the individual, and possibly covariates. E.g. load in from NONMEM using \link{read_table_nm}} } \description{ VPC based on ui model