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<!DOCTYPE html>
<html>
<head>
<meta charset='utf-8'>
<meta http-equiv="X-UA-Compatible" content="chrome=1">
<link rel="stylesheet" type="text/css" href="stylesheets/stylesheet.css" media="screen">
<link rel="stylesheet" type="text/css" href="stylesheets/github-dark.css" media="screen">
<link rel="stylesheet" type="text/css" href="stylesheets/print.css" media="print">
<title>BIP Week by ndlib-cds</title>
</head>
<body>
<header>
<div class="container">
<h1>BIP Week 2020</h1>
<h2>Bioinformatics Introductory Program Week, July 27th - 30th</h2>
<section id="downloads">
<a href="https://github.com/ndlib-cds/BIP-Week" class="btn btn-github"><span class="icon"></span>View on GitHub</a>
</section>
</div>
</header>
<div class="container">
<section id="main_content">
<h4>
<a id="register" class="anchor" href="#register" aria-hidden="true">
<span aria-hidden="true" class="octicon octicon-link">REGISTER NOW!</span></a>
</h4>
<p>
Want to register for the whole week? send an
<a href="mailto:[email protected]?subject=Please%20register%20me%2C%20%5Byour%20netid%5D%20for%20BIP%20Week&body=Hello%20Julie!%0D%0A%0D%0AMy%20name%20is%20%5BFirst%20Name%5D%20%5BLast%20Name%5D%20and%20I%20would%20like%20to%20register%20for%20BIP%20week%20from%20the%2027th%20to%20the%2030th%20for%20all%20sessions.%0D%0A%0D%0AThank%20you.%0D%0A%0D%0A" >
email to Julie Vecchio
</a>
</p>
<h3>
<a id="welcome-to-bip" class="anchor" href="#welcome-to-bip" aria-hidden="true">
<span aria-hidden="true" class="octicon octicon-link">
Welcome to Bioinformatics Introductory Program Week
</span>
</a>
</h3>
<p>We invite you to join us for a series of online introductory workshops designed by the <a href="https://cds.library.nd.edu/">Navari Family Center for Digital Scholarship</a> and the <a href="https://genomics.nd.edu/">Genomics and Bioinformatics Core Facility</a> to help incoming Life Sciences graduate students hit the ground running this fall semester!</p>
<p>This series of workshops is designed to help participants starting out with minimal knowledge of command line tools work up to performing tasks such as creating simple R scripts for data analysis. This series will also introduce attendees to computing resources available to them at Notre Dame. While this program is designed for incoming Life Sciences graduate students, it is open to anyone who would like to learn more about bioinformatics.</p>
<p>
Monday, July 27
<ul>
<li>9:00am - 9:30am: Bioinformatics Introduction at Notre Dame</li>
<li>9:30am - 10:15am: Using Center for Research Computing (CRC) Resources</li>
<li>10:20am - 11:10am: The Unix Shell Part 1 of 2 - Resource: <a href="https://librarycarpentry.org/lc-shell/">lc-shell</a></li>
<li>11:15am - 12:15pm: The Unix Shell Part 2 of 2 - Resource: <a href="https://librarycarpentry.org/lc-shell/">lc-shell</a></li>
<li>1:15pm - 2:45pm: Project Organization and Management for Genomics - Resource: <a href="https://datacarpentry.org/organization-genomics/ ">organization-genomics</a></li>
<li>3:15pm - 4:20pm: Databases and SQL Part 1 of 5 - Resource: <a href="http://swcarpentry.github.io/sql-novice-survey/ ">sql-novice-survey</a></li>
<li>4:30pm - 5:00pm: Databases and SQL Part 2 of 5 - Resource: <a href="http://swcarpentry.github.io/sql-novice-survey/ ">sql-novice-survey</a></li>
</ul>
Tuesday, July 28
<ul>
<li>9:45am - 10:50am: Data Wrangling and Processing for Genomics Part 1 of 3 - Resource: <a href="https://datacarpentry.org/wrangling-genomics/">wrangling-genomics</a></li>
<li>11am - 11:55am: Data Wrangling and processing for Genomics Part 2 of 3 - Resource: <a href="https://datacarpentry.org/wrangling-genomics/">wrangling-genomics</a></li>
<li>12:00pm - 1:00pm: Bring Your Own Lunch Session—Bioinformatics Datasets & Other Library Resources</li>
<li>1:15pm - 3:00pm: Data Wrangling and Processing for Genomics Part 3 of 3 - Resource: <a href="https://datacarpentry.org/wrangling-genomics/">wrangling-genomics</a></li>
<li>3:15pm - 3:55pm: Databases and SQL Part 3 of 5 - Resource: <a href="http://swcarpentry.github.io/sql-novice-survey/ ">sql-novice-survey</a></li>
<li>4:00pm - 4:55pm: Databases and SQL Part 4 of 5 - Resource: <a href="http://swcarpentry.github.io/sql-novice-survey/ ">sql-novice-survey</a></li>
</ul>
Wednesday, July 29
<ul>
<li>9:30am - 10:15am: Introduction to R and RStudio for Genomics Part 1 of 5 - Resource: <a href="https://datacarpentry.org/genomics-r-intro/">genomics-r-intro</a></li>
<li>10:30am - 11:50am: Introduction to R and RStudio for Genomics Part 2 of 5 - Resource: <a href="https://datacarpentry.org/genomics-r-intro/">genomics-r-intro</a></li>
<li>12:00pm - 1:00pm: Bring Your Own Lunch Session—Introduction to ORCID and OSF</li>
<li>1:15pm - 2:45pm: Introduction to R and RStudio for Genomics Part 3 of 5 - Resource: <a href="https://datacarpentry.org/genomics-r-intro/">genomics-r-intro</a></li>
<li>3:15 - 4:00pm: Databases and SQL Part 5 of 5 - Resource: <a href="http://swcarpentry.github.io/sql-novice-survey/11-prog-R/index.html">ql-novice-survey/11-prog-R</a></li>
</ul>
Thursday, July 30
<ul>
<li>9:30am - 10:30am: Introduction to R and RStudio for Genomics Part 4 of 5 - Resource: <a href="https://datacarpentry.org/genomics-r-intro/">genomics-r-intro</a></li>
<li>10:45am - 12:00pm: Introduction to R and RStudio for Genomics Part 5 of 5 - Resource: <a href="https://datacarpentry.org/genomics-r-intro/">genomics-r-intro</a></li>
<li>1:15pm - 2:00pm: Version Control with Git Part 1 of 3</li>
<li>2:15pm - 3:00pm: Version Control with Git Part 2 of 3</li>
<li>3:15pm - 4:15pm: Version Control with Git Part 3 of 3 - Resource: <a href="http://swcarpentry.github.io/git-novice/14-supplemental-rstudio/index.html">14-supplemental-rstudio</a> and <a href="https://librarycarpentry.org/lc-git/05-github-pages/index.html">05-github-pages</a></li>
<li>4:15pm - 4:30pm: Concluding Remarks from Michael Pfrender</li>
</ul>
</p>
<p>Learn more: <a href="libcal.library.nd.edu/calendar/bioinformatics-introductory-program">ND Lib Cal</a>, <a href="https://calendar.google.com/calendar?cid=NW1qM2IzYzY4N2hkZWpwcjJ1Mm8waGl2MGNAZ3JvdXAuY2FsZW5kYXIuZ29vZ2xlLmNvbQ">google calendar</a></p>
<p>Questions: <code>d m o l i k at nd.edu</code></p>
<p>
Registration for Bioinformatics Introductory Program (BIP) Week (https://libcal.library.nd.edu/calendar/bioinformatics-introductory-program) which requires each session to be registered for independently. If folks are interested in attending most or every session and are inquiring about how to more efficiently sign up, Julie Vecchio would be happy to manually register them for the sessions via email. Attendees would need to send their first/last name and email address to Julie Vecchio <code>j v e c c h i o at nd.edu</code> for a more comprehensive registration.
</p>
</section>
</div>
</body>
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