From e46b0e6ff2a0403b832bc71de535e0d4088df93c Mon Sep 17 00:00:00 2001 From: "Christopher J. Markiewicz" Date: Mon, 20 Nov 2023 18:56:17 -0500 Subject: [PATCH] REL: 0.13.0 --- CHANGES.rst | 50 ++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 50 insertions(+) diff --git a/CHANGES.rst b/CHANGES.rst index ea2c4f7a13..8df7f4fbd4 100644 --- a/CHANGES.rst +++ b/CHANGES.rst @@ -1,3 +1,53 @@ +0.13.0 (November 20, 2023) +========================== +New feature release in the 0.13.x series. + +This release adds support for MSM-Sulc, improving the alignment of subject +surfaces to the fsLR template. This process is enabled by default, but may +be disabled with the ``--no-msm`` flag. + +The ``--fast-track`` flag has been deprecated in favor of a more flexible +``--derivatives`` flag. This flag can be used to specify one or more +directories to search for derivatives. Derivatives found in these +directories can be used to skip corresponding workflows. For derivatives +that can be deterministically generated from other derivatives, sMRIPrep +will regenerate the derivatives to avoid inconsistencies. + +This supports the 23.2.x series of fMRIPrep, which introduces a ``--level`` +flag to control the level of processing. This feature is not currently +available in sMRIPrep, but will be in a future release. To preview this +functionality, use fMRIPrep's ``--anat-only`` flag to run only structural +workflows. + +* FIX: Add missing fsLR reg sphere to io_spec (#382) +* FIX: Invert sulcal depth metric before passing to MSM, use HCP atlas files (#383) +* FIX: Update surfaces with fsnative2t1w_xfm (#384) +* FIX: Add surface-modify-sphere call to catch potential sphere elongation (#375) +* ENH: Add T2w/FLAIR usage to boilerplate (#392) +* ENH: Annotate mris_expand with thread usage (#386) +* ENH: Add sphere registration to fit workflow, check for precomputed (#370) +* ENH: Save msm registration sphere as desc-msm_sphere.surf.gii (#365) +* ENH: Add Multimodal Surface Matching (#358) +* ENH: Run pytest on CircleCI (#364) +* ENH: Separate surfaces and morphometrics into standalone outputs (#359) +* RF: Split template and fsLR resampling and sinking into isolated workflows (#388) +* RF: Replace most of anat_ribbon_wf with a Python function (#363) +* RF: Break up surface workflows for easier mix-and-match in fMRIPrep (#360) +* TEST: Add smoke tests for main anatomical workflows (#390) +* TEST: Add sloppy MSM configuration for use in debugging/CI (#366) +* DOC: http:// → https:// (#377) +* DOC: Fix misspelling found by codespell (#378) +* MNT: Remove AFNI from smriprep docker container (#387) +* MNT: Use a set literal, not a list literal (#379) +* MNT: Update installation environment (#361) +* MNT: Include 3T18yoSchwartzReactN32 FreeSurfer atlas in image (#357) +* MNT: Infrastructure updates (#351) +* MNT: fix flake8 warning (#349) +* MNT: apply pyupgrade suggestions (#348) +* MNT: fix typos found by codespell (#346) +* MNT: Python 3.11 should be supported (#347) + + 0.12.2 (August 16, 2023) ======================== Bug-fix release in the 0.12.x series.