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Gemfile.lock
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GIT
remote: https://github.com/SysMO-DB/bioportal.git
revision: 5b2f2e506a406a002413424de9b37177e4d2df0b
specs:
bioportal (3.0)
GIT
remote: https://github.com/SysMO-DB/fleximage.git
revision: bb1182f2716a9bf1b5d85e186d8bb7eec436797b
ref: bb1182f2716a9bf1b5d85e186d8bb7eec436797b
specs:
fleximage (0.1)
GIT
remote: https://github.com/SysMO-DB/my_responds_to_parent.git
revision: 5fadfd0cd85a0a70caaddd36f9617cb743047e0b
specs:
my_responds_to_parent (1.0.0)
GIT
remote: https://github.com/seek4science/DOI-query-tool.git
revision: 7c2ba934885ad404d964cd371e236d3348efb63c
specs:
doi_query_tool (1.0.1)
libxml-ruby (>= 2.6.0)
GIT
remote: https://github.com/seek4science/zenodo-client.git
revision: 72c19d105ec2aab5298bf6c5bd50d30c798f169e
specs:
zenodo-client (0.3.0)
rest-client (~> 2.0)
GEM
remote: https://rubygems.org/
specs:
RedCloth (4.3.2)
actioncable (5.2.4.6)
actionpack (= 5.2.4.6)
nio4r (~> 2.0)
websocket-driver (>= 0.6.1)
actionmailer (5.2.4.6)
actionpack (= 5.2.4.6)
actionview (= 5.2.4.6)
activejob (= 5.2.4.6)
mail (~> 2.5, >= 2.5.4)
rails-dom-testing (~> 2.0)
actionpack (5.2.4.6)
actionview (= 5.2.4.6)
activesupport (= 5.2.4.6)
rack (~> 2.0, >= 2.0.8)
rack-test (>= 0.6.3)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.0, >= 1.0.2)
actionview (5.2.4.6)
activesupport (= 5.2.4.6)
builder (~> 3.1)
erubi (~> 1.4)
rails-dom-testing (~> 2.0)
rails-html-sanitizer (~> 1.0, >= 1.0.3)
active_model_serializers (0.10.6)
actionpack (>= 4.1, < 6)
activemodel (>= 4.1, < 6)
case_transform (>= 0.2)
jsonapi-renderer (>= 0.1.1.beta1, < 0.2)
activejob (5.2.4.6)
activesupport (= 5.2.4.6)
globalid (>= 0.3.6)
activemodel (5.2.4.6)
activesupport (= 5.2.4.6)
activerecord (5.2.4.6)
activemodel (= 5.2.4.6)
activesupport (= 5.2.4.6)
arel (>= 9.0)
activerecord-import (1.0.2)
activerecord (>= 3.2)
activerecord-session_store (2.0.0)
actionpack (>= 5.2.4.1)
activerecord (>= 5.2.4.1)
multi_json (~> 1.11, >= 1.11.2)
rack (>= 2.0.8, < 3)
railties (>= 5.2.4.1)
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actionpack (= 5.2.4.6)
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marcel (~> 0.3.1)
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minitest (~> 5.1)
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gyoku (>= 0.4.0)
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hashie (>= 1.0, < 3.0)
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execjs
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coderay (>= 1.0.0)
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rack (>= 0.9.0)
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latex-decode (~> 0.0)
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debug_inspector (>= 0.0.1)
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terrapin
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sassc (>= 2.0.0)
builder (3.2.4)
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coffee-script (>= 2.2.0)
railties (>= 4.0.0)
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coffee-script-source
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diff-lcs (1.4.4)
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faraday
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git (1.10.2)
rchardet (~> 1.8)
globalid (0.4.2)
activesupport (>= 4.2.0)
google-analytics-rails (1.1.0)
gyoku (0.4.6)
builder (>= 2.1.2)
haml (5.0.4)
temple (>= 0.8.0)
tilt
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handlebars_assets (0.23.1)
execjs (~> 2.0)
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tilt (>= 1.2)
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domain_name (~> 0.5)
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mime-types (~> 3.0)
multi_xml (>= 0.5.2)
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rack
i18n (1.8.11)
concurrent-ruby (~> 1.0)
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i18n (>= 0.6.6)
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indefinite_article (0.2.4)
activesupport
jbuilder (2.8.0)
activesupport (>= 4.2.0)
multi_json (>= 1.2)
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jbuilder (~> 2)
jquery-rails (4.2.2)
rails-dom-testing (>= 1, < 3)
railties (>= 4.2.0)
thor (>= 0.14, < 2.0)
jquery-ui-rails (6.0.1)
railties (>= 3.2.16)
json (2.3.1)
json-diff (0.4.1)
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activesupport (>= 4.2)
aes_key_wrap
bindata
json-ld (3.0.2)
multi_json (~> 1.12)
rdf (>= 2.2.8, < 4.0)
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rdf (~> 3.0)
json-schema (2.8.0)
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uri_template (~> 0.7)
jsonapi-renderer (0.1.3)
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ld-patch (0.3.3)
ebnf (~> 1.1)
rdf (>= 2.2, < 4.0)
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ld-patch (~> 0.3, >= 0.3.3)
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rdf (~> 3.0)
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rdf-json (>= 2.2, < 4.0)
rdf-microdata (>= 2.2.3, < 4.0)
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rdf-rdfxml (>= 2.2.1, < 4.0)
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rdf-tabular (>= 2.2.1, < 4.0)
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rails (>= 4.0.0)
rake
mail (2.7.1)
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nesty (~> 1.0)
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method_source (1.0.0)
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mime-types-data (3.2021.0225)
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nokogiri (~> 1)
rake
mini_mime (1.1.1)
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ansi
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nesty (1.0.2)
net-http-digest_auth (1.4.1)
net-http-persistent (3.1.0)
connection_pool (~> 2.2)
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netrc (0.11.0)
nio4r (2.5.8)
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nokogiri
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ntlm-http (0.1.1)
oauth2 (1.4.4)
faraday (>= 0.8, < 2.0)
jwt (>= 1.0, < 3.0)
multi_json (~> 1.3)
multi_xml (~> 0.5)
rack (>= 1.2, < 3)
omniauth (1.3.2)
hashie (>= 1.2, < 4)
rack (>= 1.0, < 3)
omniauth-github (1.2.0)
omniauth (~> 1.3.2)
omniauth-oauth2 (>= 1.4.0, < 2.0)
omniauth-ldap (1.0.5)
net-ldap (~> 0.12)
omniauth (~> 1.0)
pyu-ruby-sasl (~> 0.0.3.2)
rubyntlm (~> 0.3.4)
omniauth-oauth2 (1.5.0)
oauth2 (~> 1.1)
omniauth (~> 1.2)
omniauth-rails_csrf_protection (0.1.2)
actionpack (>= 4.2)
omniauth (>= 1.3.1)
omniauth_openid_connect (0.3.1)
addressable (~> 2.5)
omniauth (~> 1.3)
openid_connect (~> 1.1)
open4 (1.3.0)
openid_connect (1.3.0)
activemodel
attr_required (>= 1.0.0)
json-jwt (>= 1.5.0)
rack-oauth2 (>= 1.6.1)
swd (>= 1.0.0)
tzinfo
validate_email
validate_url
webfinger (>= 1.0.1)
openseek-api (0.17.3)
terrapin
options (2.3.2)
parallel (1.20.1)
parser (2.7.2.0)
ast (~> 2.4.1)
passenger (5.1.2)
rack
rake (>= 0.8.1)
pg (1.1.3)
pothoven-attachment_fu (3.3.0)
pr_geohash (1.0.0)
private_address_check (0.5.0)
progress_bar (1.1.0)
highline (~> 1.6)
options (~> 2.3.0)
pry (0.13.1)
coderay (~> 1.1)
method_source (~> 1.0)
pry-doc (1.1.0)
pry (~> 0.11)
yard (~> 0.9.11)
pry-remote (0.1.8)
pry (~> 0.9)
slop (~> 3.0)
psych (2.2.4)
public_suffix (4.0.6)
puma (4.3.11)
nio4r (~> 2.0)
pyu-ruby-sasl (0.0.3.3)
racc (1.6.0)
rack (2.2.3)
rack-attack (6.6.0)
rack (>= 1.0, < 3)
rack-cors (1.1.1)
rack (>= 2.0.0)
rack-oauth2 (1.19.0)
activesupport
attr_required
httpclient
json-jwt (>= 1.11.0)
rack (>= 2.1.0)
rack-test (1.1.0)
rack (>= 1.0, < 3)
rails (5.2.4.6)
actioncable (= 5.2.4.6)
actionmailer (= 5.2.4.6)
actionpack (= 5.2.4.6)
actionview (= 5.2.4.6)
activejob (= 5.2.4.6)
activemodel (= 5.2.4.6)
activerecord (= 5.2.4.6)
activestorage (= 5.2.4.6)
activesupport (= 5.2.4.6)
bundler (>= 1.3.0)
railties (= 5.2.4.6)
sprockets-rails (>= 2.0.0)
rails-controller-testing (1.0.2)
actionpack (~> 5.x, >= 5.0.1)
actionview (~> 5.x, >= 5.0.1)
activesupport (~> 5.x)
rails-dom-testing (2.0.3)
activesupport (>= 4.2.0)
nokogiri (>= 1.6)
rails-html-sanitizer (1.3.0)
loofah (~> 2.3)
rails-observers (0.1.5)
activemodel (>= 4.0)
rails-perftest (0.0.7)
rails_autolink (1.1.6)
rails (> 3.1)
rails_best_practices (1.18.0)
activesupport
code_analyzer (>= 0.4.3)
erubis
i18n
json
require_all
ruby-progressbar
railties (5.2.4.6)
actionpack (= 5.2.4.6)
activesupport (= 5.2.4.6)
method_source
rake (>= 0.8.7)
thor (>= 0.19.0, < 2.0)
rainbow (3.0.0)
raindrops (0.18.0)
rake (13.0.3)
ransack (2.1.1)
actionpack (>= 5.0)
activerecord (>= 5.0)
activesupport (>= 5.0)
i18n
rchardet (1.8.0)
rdf (3.1.13)
hamster (~> 3.0)
link_header (~> 0.0, >= 0.0.8)
rdf-aggregate-repo (2.2.1)
rdf (>= 2.2, < 4.0)
rdf-isomorphic (3.0.0)
rdf (~> 3.0)
rdf-json (2.2.0)
rdf (>= 2.2, < 4.0)
rdf-microdata (2.2.3)
htmlentities (~> 4.3)
nokogiri (~> 1.8)
rdf (>= 2.2.8, < 4.0)
rdf-xsd (>= 2.2, < 4.0)
rdf-n3 (3.0.1)
rdf (~> 3.0)
rdf-normalize (0.3.3)
rdf (>= 2.2, < 4.0)
rdf-rdfa (3.0.1)
haml (~> 5.0)
htmlentities (~> 4.3)
rdf (~> 3.0)
rdf-aggregate-repo (>= 2.2, < 4.0)
rdf-xsd (~> 3.0)
rdf-rdfxml (2.2.1)
htmlentities (~> 4.3)
rdf (>= 2.2, < 4.0)
rdf-rdfa (>= 2.2, < 4.0)
rdf-xsd (>= 2.2, < 4.0)
rdf-reasoner (0.5.1)
rdf (~> 3.0)
rdf-vocab (~> 3.0)
rdf-xsd (~> 3.0)
rdf-tabular (2.2.1)
addressable (~> 2.3)
bcp47 (~> 0.3, >= 0.3.3)
json-ld (>= 2.1, < 4.0)
rdf (>= 2.2, < 4.0)
rdf-vocab (>= 2.2, < 4.0)
rdf-xsd (>= 2.2, < 4.0)
rdf-trig (3.0.1)
ebnf (~> 1.1)
rdf (~> 3.0)
rdf-turtle (~> 3.0, >= 3.0.3)
rdf-trix (2.2.1)
rdf (>= 2.2, < 4.0)
rdf-turtle (3.0.5)
ebnf (~> 1.1)
rdf (~> 3.0)
rdf-virtuoso (0.2.0)
api_smith (~> 1.3.0)
httparty (~> 0.18.1)
rdf (~> 3.1)
rdf-vocab (3.0.4)
rdf (~> 3.0)
rdf-xsd (3.0.1)
rdf (~> 3.0)
rdoc (6.3.1)
recaptcha (4.1.0)
json
regexp_parser (2.0.0)
request-log-analyzer (1.13.4)
request_store (1.4.1)
rack (>= 1.4)
require_all (1.3.3)
responders (2.4.0)
actionpack (>= 4.2.0, < 5.3)
railties (>= 4.2.0, < 5.3)
rest-client (2.1.0)
http-accept (>= 1.7.0, < 2.0)
http-cookie (>= 1.0.2, < 2.0)
mime-types (>= 1.16, < 4.0)
netrc (~> 0.8)
rexml (3.2.5)
rfc-822 (0.4.1)
rmagick (2.15.2)
ro-bundle (0.3.0)
addressable (~> 2.8.0)
json (~> 2.3.0)
ucf (~> 2.0.2)
uuid (~> 2.3)
ro-crate (0.4.16)
addressable (>= 2.7, < 2.9)
rubyzip (~> 2.0.0)
rsolr (2.3.0)
builder (>= 2.1.2)
faraday (>= 0.9.0)
rspec-core (3.9.3)
rspec-support (~> 3.9.3)
rspec-expectations (3.9.4)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.9.0)
rspec-mocks (3.9.1)
diff-lcs (>= 1.2.0, < 2.0)
rspec-support (~> 3.9.0)
rspec-rails (3.9.1)
actionpack (>= 3.0)
activesupport (>= 3.0)
railties (>= 3.0)
rspec-core (~> 3.9.0)
rspec-expectations (~> 3.9.0)
rspec-mocks (~> 3.9.0)
rspec-support (~> 3.9.0)
rspec-support (3.9.4)
rubocop (1.6.1)
parallel (~> 1.10)
parser (>= 2.7.1.5)
rainbow (>= 2.2.2, < 4.0)
regexp_parser (>= 1.8, < 3.0)
rexml
rubocop-ast (>= 1.2.0, < 2.0)
ruby-progressbar (~> 1.7)
unicode-display_width (>= 1.4.0, < 2.0)
rubocop-ast (1.3.0)
parser (>= 2.7.1.5)
ruby-prof (1.4.2)
ruby-progressbar (1.10.1)
rubyntlm (0.3.4)
rubyzip (2.0.0)
sample-template-generator (0.6.0)
rdoc (~> 6.0)
terrapin (~> 0.6)
sass (3.4.23)
sass-rails (5.0.6)
railties (>= 4.0.0, < 6)
sass (~> 3.1)
sprockets (>= 2.8, < 4.0)
sprockets-rails (>= 2.0, < 4.0)
tilt (>= 1.1, < 3)
sassc (2.0.1)
ffi (~> 1.9)
rake
savon (1.1.0)
akami (~> 1.2.0)
builder (>= 2.1.2)
gyoku (~> 0.4.5)
httpi (~> 1.1.0)
nokogiri (>= 1.4.0)
nori (~> 1.1.0)
wasabi (~> 2.5.0)
sax-machine (1.3.2)
seedbank (0.4.0)
sexp_processor (4.15.1)
shex (0.5.2)
ebnf (~> 1.1)
json-ld (>= 2.2, < 4.0)
json-ld-preloaded (>= 2.2, < 4.0)
rdf (>= 2.2, < 4.0)
rdf-xsd (>= 2.2, < 4.0)
sparql (>= 2.2, < 4.0)
sxp (~> 1.0)
simple-spreadsheet-extractor (0.16.1)
libxml-ruby (~> 2.8)
open4 (= 1.3.0)
simplecov (0.16.1)
docile (~> 1.1)
json (>= 1.8, < 3)
simplecov-html (~> 0.10.0)
simplecov-html (0.10.2)
sixarm_ruby_unaccent (1.1.1)
slop (3.6.0)
sort_alphabetical (1.1.0)
unicode_utils (>= 1.2.2)
sparql (3.0.2)
builder (~> 3.2)
ebnf (~> 1.1)
rdf (~> 3.0)
rdf-aggregate-repo (>= 2.2, < 4.0)
rdf-xsd (~> 3.0)
sparql-client (~> 3.0)
sxp (~> 1.0)
sparql-client (3.0.1)
net-http-persistent (>= 2.9, < 4)
rdf (~> 3.0)
sprockets (3.7.2)
concurrent-ruby (~> 1.0)
rack (> 1, < 3)
sprockets-rails (3.2.2)
actionpack (>= 4.0)
activesupport (>= 4.0)
sprockets (>= 3.0.0)
sqlite3 (1.4.2)
sunspot (2.5.0)
pr_geohash (~> 1.0)
rsolr (>= 1.1.1, < 3)
sunspot_matchers (2.2.5.0)
sunspot_rails (2.5.0)
rails (>= 3)
sunspot (= 2.5.0)
swd (1.3.0)
activesupport (>= 3)
attr_required (>= 0.0.5)
httpclient (>= 2.4)
sxp (1.0.2)
rdf (~> 3.0)
systemu (2.6.5)
teaspoon (1.2.0)
railties (>= 3.2.5)
teaspoon-mocha (2.3.3)
teaspoon (>= 1.0.0)
temple (0.8.1)
terrapin (0.6.0)
climate_control (>= 0.0.3, < 1.0)
test-prof (0.4.8)
thor (1.1.0)
thread_safe (0.3.6)
tilt (2.0.9)
tzinfo (1.2.9)
thread_safe (~> 0.1)
ucf (2.0.2)
zip-container (~> 4.0.1)
uglifier (3.2.0)
execjs (>= 0.3.0, < 3)
unf (0.1.4)
unf_ext
unf_ext (0.0.7.7)
unicode-display_width (1.7.0)
unicode_utils (1.4.0)
unicorn (5.3.0)
kgio (~> 2.6)
raindrops (~> 0.7)
unicorn-rails (2.2.1)
rack
unicorn
uri_template (0.7.0)
uuid (2.3.9)
macaddr (~> 1.0)
validate_email (0.1.6)
activemodel (>= 3.0)
mail (>= 2.2.5)
validate_url (1.0.13)
activemodel (>= 3.0.0)
public_suffix
vcr (2.9.3)
wasabi (2.5.1)
httpi (~> 1.0)
nokogiri (>= 1.4.0)
webfinger (1.2.0)
activesupport
httpclient (>= 2.4)
webmock (3.10.0)
addressable (>= 2.3.6)
crack (>= 0.3.2)
hashdiff (>= 0.4.0, < 2.0.0)
webrick (1.7.0)
webrobots (0.1.2)
websocket-driver (0.7.5)
websocket-extensions (>= 0.1.0)
websocket-extensions (0.1.5)
whenever (1.0.0)
chronic (>= 0.6.3)
whenever-test (1.0.1)
whenever
will_paginate (3.1.8)
yaml_db (0.7.0)
rails (>= 3.0)
rake (>= 0.8.7)
yard (0.9.25)
zip-container (4.0.2)
rubyzip (~> 2.0.0)
PLATFORMS
ruby
DEPENDENCIES
RedCloth (>= 4.3.0)
active_model_serializers (~> 0.10.2)
activerecord-import
activerecord-session_store
acts-as-taggable-on
acts_as_list
acts_as_tree
addressable (~> 2.8.0)
attr_encrypted (~> 3.0.0)
auto_strip_attributes
better_errors (~> 2.5.1)
bibtex-ruby (~> 5.1.0)
binding_of_caller
bio (~> 1.5.1)
bioportal (>= 3.0)!
bives (~> 2.0)
bootsnap (>= 1.1.0)
bootstrap-sass (>= 3.4.1)
bundler (>= 1.8.4)
citeproc-ruby (~> 2.0.0)
coffee-rails (~> 4.2)
commonmarker
country_select
csl-styles (~> 2.0.0)
daemons
database_cleaner (~> 1.7.0)
delayed_job_active_record
docsplit
doi_query_tool!
doorkeeper (>= 5.2.5)
dotenv-rails (~> 2.7.6)
dynamic_form
equivalent-xml
exception_notification
factory_girl (= 2.6.4)
feedjira (~> 1)
fleximage!
fssm
gem-licenses
git
google-analytics-rails
handlebars_assets
hpricot (~> 0.8.2)
i18n-js
indefinite_article
jbuilder
jbuilder-json_api
jquery-rails (~> 4.2.2)
jquery-ui-rails
json-diff
json-schema
json_schemer
libreconv
libxml-ruby (~> 2.9.0)
linkeddata
lograge
loofah
magic_lamp
mechanize
metainspector
mimemagic (~> 0.3.7)
minitest (~> 5.14)
minitest-reporters
my_responds_to_parent!
mysql2
nokogiri (~> 1.13.4)
omniauth (~> 1.3.1)
omniauth-github (~> 1.2.0)
omniauth-ldap (~> 1.0.5)
omniauth-rails_csrf_protection (~> 0.1)
omniauth_openid_connect
openseek-api
passenger
pg
pothoven-attachment_fu
private_address_check
progress_bar
pry
pry-doc
pry-remote
psych
puma (~> 4.3)
rack-attack (~> 6.6.0)
rack-cors
rails (~> 5.2.4.0)
rails-controller-testing
rails-html-sanitizer
rails-observers
rails-perftest
rails_autolink
rails_best_practices
ransack
rdf
rdf-virtuoso (>= 0.2.0)
rdoc
recaptcha (~> 4.1.0)
request-log-analyzer
request_store
responders
rest-client (~> 2.0)
rfc-822
rmagick (= 2.15.2)
ro-bundle (~> 0.3.0)
ro-crate (~> 0.4.16)
rspec-rails (~> 3.6)
rubocop
ruby-prof
rubyzip
sample-template-generator (~> 0.5)
sass-rails (~> 5.0)
savon (= 1.1.0)
seedbank
simple-spreadsheet-extractor (~> 0.16.0)
simplecov
sprockets-rails
sqlite3
sunspot_matchers
sunspot_rails
teaspoon
teaspoon-mocha
terrapin
test-prof
uglifier
unicorn-rails
uuid (~> 2.3)
validate_url
vcr (~> 2.9)
webmock
whenever (~> 1.0.0)
whenever-test
will_paginate (~> 3.1)
yaml_db
zenodo-client!
BUNDLED WITH
2.1.4