docker-compose.yml

version: '3.8'

services:
  snakemake:
    image: ghcr.io/nfdi4health/docker-vambn/vambn:latest
    volumes:
      - ./vambn_config.yml:/usr/src/app/vambn_config.yml
      - ./data:/usr/src/app/data
      - ./reports:/usr/src/app/reports
      - ./logs:/usr/src/app/logs
    depends_on:
      - postgres
      - mlflow
    networks:
      - backend
    entrypoint: tail -f /dev/null

  postgres:
    image: postgres:13
    environment:
      POSTGRES_USER: vambn
      POSTGRES_PASSWORD: app
      POSTGRES_DB: optuna
    volumes:
      - postgres_data:/var/lib/postgresql/data
    networks:
      - backend
    healthcheck:
      test: [ "CMD-SHELL", "pg_isready -U vambn -d optuna" ]
      interval: 10s
      timeout: 5s
      retries: 5
    entrypoint:
      - sh
      - -c
      - docker-entrypoint.sh postgres

  mlflow:
    image: ghcr.io/nfdi4health/docker-vambn/mlflow:latest
    volumes:
      - mlflow_artifacts:/usr/src/app/mlruns
    ports:
      - "5000:5000"
    depends_on:
      mlflow_postgres:
        condition: service_healthy
    networks:
      - backend

  mlflow_postgres:
    image: postgres:13
    environment:
      POSTGRES_USER: mlflow
      POSTGRES_PASSWORD: mlflow
      POSTGRES_DB: mlflow
    volumes:
      - mlflow_postgres_data:/var/lib/postgresql/data
    networks:
      - backend
    healthcheck:
      test: [ "CMD-SHELL", "pg_isready -U mlflow -d mlflow" ]
      interval: 10s
      timeout: 5s
      retries: 5

volumes:
  postgres_data:
  mlflow_artifacts:
  mlflow_postgres_data:


networks:
  backend: