.gitignore

# Automatically generated by `hgimportsvn`
.svn
.hgsvn

# Ignore local virtualenvs
lib/
bin/
include/
.Python/

# These lines are suggested according to the svn:ignore property
# Feel free to enable them by uncommenting them
*.pyc
*.pyo
*.swp
*.class
*.orig
*~
.hypothesis/

# autogenerated
src/_pytest/_version.py
# setuptools
.eggs/

doc/*/_build
doc/*/.doctrees
doc/*/_changelog_towncrier_draft.rst
build/
dist/
*.egg-info
htmlcov/
issue/
env/
.env/
.venv/
/pythonenv*/
3rdparty/
.tox
.cache
.pytest_cache
.mypy_cache
.coverage
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coverage.xml
.ropeproject
.idea
.hypothesis
.pydevproject
.project
.settings
.vscode
__pycache__/

# generated by pip
pip-wheel-metadata/

# pytest debug logs generated via --debug
pytestdebug.log

results/*
results/models/*
lightning_logs/*
__pycache__/*
vambn/log_files/*
.vscode/

*.egg-info
*cpython-39.pyc
*cpython-310.pyc
*.pyc
*.db
*.ckpt
*.log

launch.json

# Created by .ignore support plugin (hsz.mobi)

# Mlflow
lightning_logs/*
mlruns/*

### Python template
# Byte-compiled / optimized / DLL files
__pycache__/
*.py[cod]
*$py.class

.idea/*
.DS_Store
../.idea

# C extensions
*.so

# Distribution / packaging
.Python
build/
develop-eggs/
dist/
downloads/
eggs/
.eggs/
lib/
lib64/
parts/
sdist/
var/
wheels/
pip-wheel-metadata/
share/python-wheels/
*.egg-info/
.installed.cfg
*.egg
MANIFEST

# PyInstaller
#  Usually these files are written by a python script from a template
#  before PyInstaller builds the exe, so as to inject date/other infos into it.
*.manifest
*.spec

# Installer logs
pip-log.txt
pip-delete-this-directory.txt

# Unit test / coverage reports
htmlcov/
.tox/
.nox/
.coverage
.coverage.*
.cache
nosetests.xml
coverage.xml
*.cover
*.py,cover
.hypothesis/
.pytest_cache/
.hypothesis/

# Translations
*.mo
*.pot

# Django stuff:
*.log
local_settings.py
db.sqlite3
db.sqlite3-journal
.static_storage/
.media/
local_settings.py

# Flask stuff:
instance/
.webassets-cache

# Scrapy stuff:
.scrapy

# Sphinx documentation
docs/_build/

# PyBuilder
target/

# Jupyter Notebook
.ipynb_checkpoints

# IPython
profile_default/
ipython_config.py

# pyenv
.python-version

# pipenv
#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
#   However, in case of collaboration, if having platform-specific dependencies or dependencies
#   having no cross-platform support, pipenv may install dependencies that don't work, or not
#   install all needed dependencies.
#Pipfile.lock

# PEP 582; used by e.g. github.com/David-OConnor/pyflow
__pypackages__/

# Celery stuff
celerybeat-schedule
celerybeat.pid
# pyenv
.python-version

# celery beat schedule file
celerybeat-schedule

# SageMath parsed files
*.sage.py

# Environments
.env
.venv
env/
venv/
ENV/
env.bak/
venv.bak/

# VSCode settings
.vscode

# Spyder project settings
.spyderproject
.spyproject

# Rope project settings
.ropeproject

# mkdocs documentation
/site

# mypy
.mypy_cache/
.dmypy.json
dmypy.json

# Pyre type checker
.pyre/

*.aux
*.glo
*.idx
*.log
*.toc
*.ist
*.acn
*.acr
*.alg
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*.blg
*.dvi
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*.gls
*.ilg
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*.lof
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*.mtc
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*.out
*.synctex.gz
*.bcf

# hyrdra output
outputs/
multirun/

# snakemake outputs
.snakemake/
.r-setup-complete

#
reports/
reports*/
logs/
slurm/
data/
!vambn/data/
!hivae/data/
results_bn/

.snakemake/*
data/processed/*
data/raw/*
.RData
.Rhistory
Rplots.pdf
notebooks
lossTest
minMaxTest
testing/
*reports*/
*Reports*/

vambn_config.yml # requires forced add; default values should not be overwritten
poetry.lock
testAltoida/
testTexas/
tmux-start.sh
vambn_config_*
testBase*/
converted_data/
.pyre/
databases/
.utils/