SBO.md

SBO - Systems Biology Ontology

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Ontology

Aspect	Description
Full Name	Systems Biology Ontology
Synonyms/Alternative Names	-
Ontology Acronym	SBO
Creator(s) & Issuing Organisation	Tung Nguyen, Jonathan Karr, Rahuman Sheriff
Nature of Organisational Structure	Maintained by community via GitHub

References

Aspect	Description
Organisational Website	https://www.ebi.ac.uk/ols/ontologies/sbo
Persistent URI of Ontology File	https://raw.githubusercontent.com/EBI-BioModels/SBO/master/SBO_OWL.owl
Link to Documentation	-
Link to Version directory	https://github.com/EBI-BioModels/SBO/blob/master/SBO_OWL.owl
Optional links (Papers, Repos,...)	https://github.com/EBI-BioModels/SBO/

Ontology Modeling And Availability

Aspect	Description
Ontology Formats Provided	owl, obo
Degree of Inference/Composition	non inferred
License	Artistic-2.0 license
Validated Resoning with	HermiT, FaCT++
Shortest reasoning time	11 ms
Aligned with Top Level Ontology	OBO
Imports Ontology(ies)	-
Prefixes used	daml; mathml
Class annotation types	rdfs:label, rdfs:comment

Domain of Interest Represented (contained, related: broader/narrower, missing)

Aspect	Description
Top Level Ontology	related: narrower
Process Design, Energy and Cost Data	missing
Heat, Transport and Kinetic Data	missing
Characterisation Data	missing
Performance Data	related:narrower
Operando Data	missing
Synthesis Data	related: broader
Process Modeling	contained: broader
Material Modeling	contained: broader
Chemical Substance Modeling	contained: narrower
Photocatalysis	related:broader
Electrocatalysis	missing
Heterogenous catalysis	missing
Homogenous catalysis	missing
Biocatalysis	contained

Ontology Characteristics

Aspect	Description
Axioms	2982
Logical	745
Declaration	695
Class count	694
Object property count	1
Data property count	0
Individual count	0
Annotation Property count	4

Comments

Controlled vocabulary for Systems Biology and computational modeling in Systems Biology.