BAO.md

BAO - BioAssay Ontology

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Ontology

Aspect	Description
Full Name	BioAssay Ontology
Synonyms/Alternative Names	-
Ontology Acronym	BAO
Creator(s) & Issuing Organisation	Hande Küçük McGinty, Janice Kranz, Joseph Ostrow, Alex Clark, Yu Lin, Saminda Abeyruwan, Uma Vempati, Kunie Sakurai, Vance Lemmon, Ubbo Visser, John Turner, Nicolette Ross, Joan Glenny-Pescov, Jiaming Hu, Caty Chung, Stephan Schurer*
Nature of Organisational Structure	University of Miami, Ontology is still actively maintained

References

Aspect	Description
Organisational Website	http://bioassayontology.org/
Persistent URI of Ontology File	https://raw.githubusercontent.com/BioAssayOntology/BAO/master/bao_complete_merged.owl
Link to Documentation	-
Link to Version directory	https://github.com/BioAssayOntology
Optional links (Papers, Repos,...)	doi:10.1186/2041-1480-5-S1-S5 ; doi:10.1371/journal.pone.0049198 ; doi:10.1186/1471-2105-12-257

Ontology Modeling And Availability

Aspect	Description
Ontology Formats Provided	owl
Degree of Inference/Composition	non inferred, available as merged version
License	CC-BY-4.0
Validated Resoning with	FaCT++, HermiT
Shortest reasoning time	215 ms
Aligned with Top Level Ontology	-
Imports Ontology(ies)	-
Prefixes used	bao,bao1,cellline,core,dc,efo,foaf,obo,oboInOwl,owl,protege,rdf,rdfs,skos,xml,xsd
Class annotation types	rdfs:label, OBO:IAO_0000115 for textual definitions

Domain of Interest Represented (contained, related: broader/narrower, missing)

Aspect	Description
Top Level Ontology	missing
Process Design, Energy and Cost Data	missing
Heat, Transport and Kinetic Data	missing
Characterisation Data	contained
Performance Data	missing
Operando Data	missing
Synthesis Data	related: broader
Process Modeling	related: narrower
Material Modeling	related: broader
Chemical Substance Modeling	related: narrower
Photocatalysis	related:broader
Electrocatalysis	missing
Heterogenous catalysis	missing
Homogenous catalysis	missing
Biocatalysis	related:narrower

Ontology Characteristics

Aspect	Description
Axioms	92149
Logical	10052
Declaration	7838
Class count	7512
Object property count	170
Data property count	58
Individual count	1
Annotation Property count	100

Comments

Describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. Quite applied and in active development, see also here: http://bioassayontology.org/bao-bioportal/