diff --git a/CHANGELOG.md b/CHANGELOG.md index 93362ac7..1ade665a 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -8,6 +8,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0 - [[#481]](https://github.com/nf-core/smrnaseq/pull/481) - Fix [MIRTOP_STATS IndexError](https://github.com/nf-core/smrnaseq/issues/477) - Fix mirtop process execution when mirgenedb is used. - [[#482]](https://github.com/nf-core/smrnaseq/pull/482) - Update documentation regarding MirgeneDB input files. - [[#486]](https://github.com/nf-core/smrnaseq/pull/486) - Replace `CSVTK_JOIN` to improve processing in large amount of files. +- [[#494]](https://github.com/nf-core/smrnaseq/pull/494) - Update [help text](https://github.com/nf-core/smrnaseq/issues/491) for `--fasta` parameter - [[#493]](https://github.com/nf-core/smrnaseq/pull/493) - Fix [[#488]](https://github.com/nf-core/smrnaseq/issues/488) - Fix runtime error that can occur when params.genome is set. ## v2.4.0 - 2024-10-14 - Navy Iron Boxer diff --git a/nextflow_schema.json b/nextflow_schema.json index 02984622..7ae422c4 100644 --- a/nextflow_schema.json +++ b/nextflow_schema.json @@ -133,7 +133,7 @@ "mimetype": "text/plain", "pattern": "^\\S+\\.fn?a(sta)?(\\.gz)?$", "description": "Path to FASTA genome file.", - "help_text": "This parameter is *mandatory* if `--genome` is not specified. If you don't have a BWA index available this will be generated for you automatically. Combine with `--save_reference` to save BWA index for future runs.", + "help_text": "FASTA file used for genome quantification and identification of novel miRNAs. If you don't have a Bowtie1 index available, this will be generated for you automatically. Combine with `--save_reference` to save Bowtie1 index for future runs.", "fa_icon": "far fa-file-code" }, "mirna_gtf": {