From fc3c5f97b221dbdc956a342d287e0f9e94fdda60 Mon Sep 17 00:00:00 2001
From: nschcolnicov <nico.schcolnicov@gmail.com>
Date: Thu, 26 Sep 2024 14:45:04 +0000
Subject: [PATCH] Pre-commit

---
 modules.json | 149 +++++++++++++--------------------------------------
 1 file changed, 36 insertions(+), 113 deletions(-)

diff --git a/modules.json b/modules.json
index be3feea8..cd298de6 100644
--- a/modules.json
+++ b/modules.json
@@ -8,207 +8,144 @@
                     "bioawk": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ],
+                        "installed_by": ["modules"],
                         "patch": "modules/nf-core/bioawk/bioawk.diff"
                     },
                     "blat": {
                         "branch": "master",
                         "git_sha": "49852039cccef84bbf5a3c0e069fac81fa3f0202",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "bowtie/align": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "bowtie/build": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "bowtie2/align": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "bowtie2/build": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "cat/fastq": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "csvtk/join": {
                         "branch": "master",
                         "git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "fastp": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "fastq_fastqc_umitools_fastp",
-                            "modules"
-                        ]
+                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                     },
                     "fastqc": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "fastq_fastqc_umitools_fastp"
-                        ]
+                        "installed_by": ["fastq_fastqc_umitools_fastp"]
                     },
                     "gawk": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "mirtop/counts": {
                         "branch": "master",
                         "git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
-                        "installed_by": [
-                            "bam_stats_mirna_mirtop"
-                        ]
+                        "installed_by": ["bam_stats_mirna_mirtop"]
                     },
                     "mirtop/export": {
                         "branch": "master",
                         "git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
-                        "installed_by": [
-                            "bam_stats_mirna_mirtop"
-                        ]
+                        "installed_by": ["bam_stats_mirna_mirtop"]
                     },
                     "mirtop/gff": {
                         "branch": "master",
                         "git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
-                        "installed_by": [
-                            "bam_stats_mirna_mirtop"
-                        ]
+                        "installed_by": ["bam_stats_mirna_mirtop"]
                     },
                     "mirtop/stats": {
                         "branch": "master",
                         "git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
-                        "installed_by": [
-                            "bam_stats_mirna_mirtop"
-                        ]
+                        "installed_by": ["bam_stats_mirna_mirtop"]
                     },
                     "mirtrace/qc": {
                         "branch": "master",
                         "git_sha": "6dd363c9b9b7cf30c4418597d20b6861848f0475",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "multiqc": {
                         "branch": "master",
                         "git_sha": "7c316cae26baf55e0add993bed2b0c9f7105c653",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "pigz/uncompress": {
                         "branch": "master",
                         "git_sha": "c00055a0b13d622b4f1f51a8e5be31deaf99ded7",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "samtools/flagstat": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_stats_samtools",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "samtools/idxstats": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_stats_samtools",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "samtools/index": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_sort_stats_samtools",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_sort_stats_samtools", "modules"]
                     },
                     "samtools/sort": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_sort_stats_samtools",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_sort_stats_samtools", "modules"]
                     },
                     "samtools/stats": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_stats_samtools",
-                            "modules"
-                        ]
+                        "installed_by": ["bam_stats_samtools", "modules"]
                     },
                     "seqcluster/collapse": {
                         "branch": "master",
                         "git_sha": "407ff4b579f5ae5a3b842b675cd75005d112b8ba",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "seqkit/grep": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ],
+                        "installed_by": ["modules"],
                         "patch": "modules/nf-core/seqkit/grep/seqkit-grep.diff"
                     },
                     "umicollapse": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     },
                     "umitools/extract": {
                         "branch": "master",
                         "git_sha": "06c8865e36741e05ad32ef70ab3fac127486af48",
-                        "installed_by": [
-                            "fastq_fastqc_umitools_fastp",
-                            "modules"
-                        ]
+                        "installed_by": ["fastq_fastqc_umitools_fastp", "modules"]
                     },
                     "untarfiles": {
                         "branch": "master",
                         "git_sha": "958e4a6031deefa327f339f11d9baf1ab5a32d5f",
-                        "installed_by": [
-                            "modules"
-                        ]
+                        "installed_by": ["modules"]
                     }
                 }
             },
@@ -217,54 +154,40 @@
                     "bam_sort_stats_samtools": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "bam_stats_mirna_mirtop": {
                         "branch": "master",
                         "git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "bam_stats_samtools": {
                         "branch": "master",
                         "git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
-                        "installed_by": [
-                            "bam_sort_stats_samtools"
-                        ]
+                        "installed_by": ["bam_sort_stats_samtools"]
                     },
                     "fastq_fastqc_umitools_fastp": {
                         "branch": "master",
                         "git_sha": "46eca555142d6e597729fcb682adcc791796f514",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nextflow_pipeline": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfcore_pipeline": {
                         "branch": "master",
                         "git_sha": "92de218a329bfc9a9033116eb5f65fd270e72ba3",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     },
                     "utils_nfvalidation_plugin": {
                         "branch": "master",
                         "git_sha": "5caf7640a9ef1d18d765d55339be751bb0969dfa",
-                        "installed_by": [
-                            "subworkflows"
-                        ]
+                        "installed_by": ["subworkflows"]
                     }
                 }
             }
         }
     }
-}
\ No newline at end of file
+}