From c51f54d491fbcb192c270ebad97da5b5a0d8c5b1 Mon Sep 17 00:00:00 2001
From: Alexander Peltzer <alex.peltzer@gmail.com>
Date: Thu, 18 Jan 2024 08:21:09 +0000
Subject: [PATCH] This should fix umitools extract

---
 conf/modules.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/conf/modules.config b/conf/modules.config
index 769f62f8..6e6820f5 100644
--- a/conf/modules.config
+++ b/conf/modules.config
@@ -153,7 +153,7 @@ if (!params.skip_fastp) {
 
 if (params.with_umi && !params.skip_umi_extract) {
     process {
-        withName: '.*:FASTQC_UMITOOLS_FASTP:UMITOOLS_EXTRACT' {
+        withName: '.*:FASTQ_FASTQC_UMITOOLS_FASTP:UMITOOLS_EXTRACT' {
             ext.args   = [
                     params.umitools_extract_method ? "--extract-method=${params.umitools_extract_method}" : '',
                     params.umitools_bc_pattern     ? "--bc-pattern='${params.umitools_bc_pattern}'" : '',