From 58c5b1a5c78c5618d6a7e1d5b4fe3f557c162c9c Mon Sep 17 00:00:00 2001
From: Gregor Sturm <gregor.sturm@boehringer-ingelheim.com>
Date: Tue, 23 Jan 2024 09:19:42 +0100
Subject: [PATCH] Increase java stack size

---
 modules/nf-core/umicollapse/main.nf | 1 +
 1 file changed, 1 insertion(+)

diff --git a/modules/nf-core/umicollapse/main.nf b/modules/nf-core/umicollapse/main.nf
index 314e0df1..fdecd6d9 100644
--- a/modules/nf-core/umicollapse/main.nf
+++ b/modules/nf-core/umicollapse/main.nf
@@ -26,6 +26,7 @@ process UMICOLLAPSE {
     """
     umicollapse \\
         -Xmx${(task.memory.toMega() * 0.8).intValue()}M \\
+        -Xss99M \\
         bam \\
         -i $bam \\
         -o ${prefix}.bam \\