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modules.json
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modules.json
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{
"name": "nf-core/smrnaseq",
"homePage": "https://github.com/nf-core/smrnaseq",
"repos": {
"https://github.com/nf-core/modules.git": {
"modules": {
"nf-core": {
"bioawk": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"blat": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bowtie/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bowtie/build": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bowtie2/align": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"bowtie2/build": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"cat/fastq": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"csvtk/join": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"fastp": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"fastqc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"gawk": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"mirdeep2/mapper": {
"branch": "master",
"git_sha": "26757a6a54d05c3133c01c564c192ff617c5ea33",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"mirdeep2/mirdeep2": {
"branch": "master",
"git_sha": "757f60e5656283122cd6ec37d4679483bebb7312",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"mirtop/counts": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/export": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/gff": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtop/stats": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": ["bam_stats_mirna_mirtop"]
},
"mirtrace/qc": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"multiqc": {
"branch": "master",
"git_sha": "cf17ca47590cc578dfb47db1c2a44ef86f89976d",
"installed_by": ["modules"]
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["bam_stats_samtools"]
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["bam_stats_samtools"]
},
"samtools/index": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/sort": {
"branch": "master",
"git_sha": "b7800db9b069ed505db3f9d91b8c72faea9be17b",
"installed_by": ["bam_sort_stats_samtools"]
},
"samtools/stats": {
"branch": "master",
"git_sha": "b13f07be4c508d6ff6312d354d09f2493243e208",
"installed_by": ["bam_stats_samtools"]
},
"seqcluster/collapse": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"seqkit/fq2fa": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"seqkit/grep": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"seqkit/replace": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_find_mirna_mirdeep2"]
},
"umicollapse": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
},
"umitools/extract": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["fastq_fastqc_umitools_fastp"]
},
"untar": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"installed_by": ["modules"]
}
}
},
"subworkflows": {
"nf-core": {
"bam_sort_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": ["subworkflows"]
},
"bam_stats_mirna_mirtop": {
"branch": "master",
"git_sha": "196062335bb9ec979075bf2212f64a369b927b0d",
"installed_by": ["subworkflows"]
},
"bam_stats_samtools": {
"branch": "master",
"git_sha": "763d4b5c05ffda3ac1ac969dc67f7458cfb2eb1d",
"installed_by": ["bam_sort_stats_samtools"]
},
"fastq_fastqc_umitools_fastp": {
"branch": "master",
"git_sha": "46eca555142d6e597729fcb682adcc791796f514",
"installed_by": ["subworkflows"]
},
"fastq_find_mirna_mirdeep2": {
"branch": "master",
"git_sha": "757f60e5656283122cd6ec37d4679483bebb7312",
"installed_by": ["subworkflows"]
},
"utils_nextflow_pipeline": {
"branch": "master",
"git_sha": "3aa0aec1d52d492fe241919f0c6100ebf0074082",
"installed_by": ["subworkflows"]
},
"utils_nfcore_pipeline": {
"branch": "master",
"git_sha": "1b6b9a3338d011367137808b49b923515080e3ba",
"installed_by": ["subworkflows"]
},
"utils_nfschema_plugin": {
"branch": "master",
"git_sha": "bbd5a41f4535a8defafe6080e00ea74c45f4f96c",
"installed_by": ["subworkflows"]
}
}
}
}
}
}