From 04598f0685a099182b8248637463876cce31b8df Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?=C3=96mer=20An?= <bounlu@gmail.com>
Date: Mon, 16 Oct 2023 17:35:46 +0800
Subject: [PATCH] fix vep_cache

---
 workflows/rnavar.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/workflows/rnavar.nf b/workflows/rnavar.nf
index 4e2724d5..746852ac 100755
--- a/workflows/rnavar.nf
+++ b/workflows/rnavar.nf
@@ -159,7 +159,7 @@ if (params.vep_cache && params.annotate_tools && (params.annotate_tools.split(',
     } else {
         vep_annotation_cache_key = params.use_annotation_cache_keys ? "${params.vep_cache_version}_${params.vep_genome}/" : ""
     }
-    def vep_cache_dir = "${vep_annotation_cache_key}${params.vep_species}/${params.vep_cache_version}_${params.vep_genome}"
+    def vep_cache_dir = "${vep_annotation_cache_key}${params.vep_cache_version}_${params.vep_genome}/${params.vep_species}"
     def vep_cache_path_full = file("$params.vep_cache/$vep_cache_dir", type: 'dir')
     if ( !vep_cache_path_full.exists() || !vep_cache_path_full.isDirectory() ) {
         if (params.vep_cache == "s3://annotation-cache/vep_cache") {