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Is this a bug or a feature that has been removed ?
Thanks
Command used and terminal output
nextflow run repos/sarek/download_cache.nf \ --snpeff_cache $annCACHE \ --snpeff_db 4.3 \ --genome GRCh38 \ -profile singularity \ -work-dir $workDIR \ -r 1.0.0N E X T F L O W ~ version 21.10.6Pulling repos/sarek ...Remote resource not found: https://api.github.com/repos/repos/sarek/contents/download_cache.nf
Relevant files
No response
System information
]N E X T F L O W ~ version 21.10.6
HPC
either SLURm or command
nf-core/rnavar 1.0.0
The text was updated successfully, but these errors were encountered:
That is at least a bug in the docs. Until it has been fixed, I suggest that using the nf-core pipeline, Sarek, for downloading the snpeff-cache and vep-cache.
Description of the bug
HI,
I am trying to download cached annotations for VEP and SnpEff, but I get the following error
Remote resource not found: https://api.github.com/repos/repos/sarek/contents/download_cache.nf
Is this a bug or a feature that has been removed ?
Thanks
Command used and terminal output
Relevant files
No response
System information
]N E X T F L O W ~ version 21.10.6
HPC
either SLURm or command
nf-core/rnavar 1.0.0
The text was updated successfully, but these errors were encountered: