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The config file contains all the definitions for the reference files, the vep_cache had to be specified manually because the automatic process for building its path is not currently working and is being addressed here: #106
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
When running the pipeline using the annotate_tools SnpEff and VEP I get the error:
publishDir path contains a variable with a null value
Command used and terminal output
nextflow run ../../main.nf -profile bi,cluster --input ../input.csv --genome GRCh38 --outdir . -c ../config.config --annotate_tools vep -resume --vep_cache 's3://annotation-cache/vep_cache/110_GRCh38/'
Relevant files
The config file contains all the definitions for the reference files, the vep_cache had to be specified manually because the automatic process for building its path is not currently working and is being addressed here: #106
System information
No response
The text was updated successfully, but these errors were encountered: