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The schema_input_panel.json required that the "panel index file cannot contain spaces and must have extension '.vcf' or '.bcf' with '.csi' or '.tbi' extension". However, 1000G index files, such as s3://1000genomes/release/20130502/ALL.chr20.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz.tbi
end with extension vcf.gz.tbi
Solution:
"index": {
"type": "string",
"pattern": "^\\S+\\.(vcf|bcf)(\\.gz)?\\.(tbi|csi)$",
"errorMessage": "Panel index file must be provided, cannot contain spaces and must have extension '.vcf' or '.bcf' with optional '.gz' extension and with '.csi' or '.tbi' extension"
}
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered:
Description of the bug
The
schema_input_panel.json
required that the "panel index file cannot contain spaces and must have extension '.vcf' or '.bcf' with '.csi' or '.tbi' extension
". However, 1000G index files, such as s3://1000genomes/release/20130502/ALL.chr20.phase3_shapeit2_mvncall_integrated_v5a.20130502.genotypes.vcf.gz.tbiend with extension
vcf.gz.tbi
Solution:
Command used and terminal output
No response
Relevant files
No response
System information
No response
The text was updated successfully, but these errors were encountered: