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Get rid of empty processes #138

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LouisLeNezet opened this issue Oct 28, 2024 · 0 comments
Open

Get rid of empty processes #138

LouisLeNezet opened this issue Oct 28, 2024 · 0 comments
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enhancement New feature or request
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@LouisLeNezet
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Description of feature

The log is fill up with the processes populated after a branching event even if nothing is present in the branch.
It would be nice to have a if statement to not show the processes if no input is present in the branch.

[-        ] NFCORE_PHASEIMPUTE:CHRCHECK_INPUT:VCF_CHR_EXTRACT                               -
[00/8502fd] NFCORE_PHASEIMPUTE:CHRCHECK_INPUT:BAM_CHR_EXTRACT (NA20359)                     [100%] 3 of 3 ✔
[-        ] NFCORE_PHASEIMPUTE:CHRCHECK_TRUTH:VCF_CHR_EXTRACT                               -
[-        ] NFCORE_PHASEIMPUTE:CHRCHECK_TRUTH:BAM_CHR_EXTRACT                               -
[05/b842ad] NFCORE_PHASEIMPUTE:CHRCHECK_PANEL:VCF_CHR_EXTRACT (1000GP chr21)                [100%] 2 of 2 ✔
[-        ] NFCORE_PHASEIMPUTE:CHRCHECK_PANEL:BAM_CHR_EXTRACT                               -
[21/1007bf] NFCORE_PHASEIMPUTE:PHASEIMPUTE:LIST_TO_FILE (all)                               [100%] 1 of 1 ✔
[5c/c5ffe2] NFCORE_PHASEIMPUTE:PHASEIMPUTE:GL_GLIMPSE1:GAWK (1000GP chr22)                  [100%] 2 of 2 ✔
[44/8d9f5a] NFCORE_PHASEIMPUTE:PHASEIMPUTE:GL_GLIMPSE1:TABIX_BGZIP (1000GP chr21)           [100%] 2 of 2 ✔
[02/3998e3] NFCORE_PHASEIMPUTE:PHASEIMPUTE:GL_GLIMPSE1:BCFTOOLS_MPILEUP (NA20359 chr22)     [100%] 6 of 6 ✔
@LouisLeNezet LouisLeNezet added enhancement New feature or request good first issue Good for newcomers labels Oct 28, 2024
@LouisLeNezet LouisLeNezet modified the milestones: v0.99.0, v1.1.0 Oct 28, 2024
@LouisLeNezet LouisLeNezet removed the good first issue Good for newcomers label Oct 29, 2024
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Labels
enhancement New feature or request
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