From ca67cbb9ad8f67a2446a930df101f1905ff1dce3 Mon Sep 17 00:00:00 2001 From: LouisLeNezet Date: Fri, 22 Nov 2024 15:49:47 +0100 Subject: [PATCH] Reset changes --- docs/output.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/output.md b/docs/output.md index 55dc7321..6e6777a4 100644 --- a/docs/output.md +++ b/docs/output.md @@ -168,7 +168,7 @@ The results from `--steps validate` will have the following directory structure: - `samples/*.vcf.gz`: A VCF of each truth sample. - `samples/*.vcf.gz.tbi`: A tbi for the truth VCF. - `stats/`: - - `*.bcftools_stats.txt`: The statistics of the truth VCF target file produced by [`BCFTOOLS_STATS`](https://samtools.github.io/bcftools/bcftools.html#stats.) + - `*.truth.bcftools_stats.txt`: The statistics of the truth VCF target file produced by [`BCFTOOLS_STATS`](https://samtools.github.io/bcftools/bcftools.html#stats.) - `*.P_T_SNP.txt`: Concordance metrics of the SNP variants obtained with [`GLIMPSE2_CONCORDANCE`](https://odelaneau.github.io/GLIMPSE/docs/documentation/concordance/). - `AllSamples.txt`: Aggregation of the above `GLIMPSE_CONCORDANCE` output across samples and tools.