From bd5a9f61850d62ce8e5fb8d9921a33fa36b297d8 Mon Sep 17 00:00:00 2001
From: LouisLeNezet <louislenezet@gmail.com>
Date: Thu, 21 Mar 2024 16:08:19 +0100
Subject: [PATCH] Delete test_panelprep as integrate in imputation

---
 conf/test_panelprep.config | 31 -------------------------------
 1 file changed, 31 deletions(-)
 delete mode 100644 conf/test_panelprep.config

diff --git a/conf/test_panelprep.config b/conf/test_panelprep.config
deleted file mode 100644
index cdcdeaf1..00000000
--- a/conf/test_panelprep.config
+++ /dev/null
@@ -1,31 +0,0 @@
-/*
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-    Nextflow config file for running minimal tests
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-    Defines input files and everything required to run a fast and simple pipeline test.
-
-    Use as follows:
-        nextflow run nf-core/phaseimpute -profile test_panelprep,<docker/singularity> --outdir <OUTDIR>
-
-----------------------------------------------------------------------------------------
-*/
-
-params {
-    config_profile_name        = 'Test Panel preparation mode'
-    config_profile_description = 'Minimal test dataset to check pipeline function'
-
-    // Limit resources so that this can run on GitHub Actions
-    max_cpus   = 2
-    max_memory = '6.GB'
-    max_time   = '6.h'
-
-    // Input data
-    input              = "${projectDir}/tests/csv/panel.csv"
-    input_region       = "${projectDir}/tests/csv/regionsheet.csv"
-    genome             = "GRCh38"
-
-    map                = "${projectDir}/tests/csv/map.csv"
-
-    step               = "panelprep"
-    tools              = ["glimpse2", "glimpse1"]
-}