diff --git a/assets/multiqc_config.yml b/assets/multiqc_config.yml
index 646ff21..1ed94d1 100644
--- a/assets/multiqc_config.yml
+++ b/assets/multiqc_config.yml
@@ -1,7 +1,7 @@
 report_comment: >
-  This report has been generated by the <a href="https://github.com/nf-core/pairgenomealign/releases/tag/1.0.0" target="_blank">nf-core/pairgenomealign</a>
+  This report has been generated by the <a href="https://github.com/nf-core/pairgenomealign/releases/tag/1.1.0" target="_blank">nf-core/pairgenomealign</a>
   analysis pipeline. For information about how to interpret these results, please see the
-  <a href="https://nf-co.re/pairgenomealign/1.0.0/docs/output" target="_blank">documentation</a>.
+  <a href="https://nf-co.re/pairgenomealign/1.1.0/docs/output" target="_blank">documentation</a>.
 report_section_order:
   "nf-core-pairgenomealign-methods-description":
     order: -1000
diff --git a/nextflow.config b/nextflow.config
index 7d70898..e8c4bd3 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -261,7 +261,7 @@ manifest {
     description     = """Pairwise alignment pipeline (genome to genome or reads to genome)"""
     mainScript      = 'main.nf'
     nextflowVersion = '!>=23.04.0'
-    version         = '1.0.0'
+    version         = '1.1.0'
     doi             = ''
 }