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[enhancement] do .yaml config parsing and puting into channels in groovy instead of python #205

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mathysgrapotte opened this issue Oct 29, 2024 · 0 comments
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enhancement New feature or request

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mathysgrapotte commented Oct 29, 2024

Description of feature

currently .yaml config parsing/splitting into multiple yamls happens in a python process, we would like this to happen in groovy for multiple reasons :

  • python programs do not use .yaml files, this is specific to the nextflow pipeline
  • would not require stimlus-py container to split .yaml files
  • more in line with nf-core/nextflow philosophy
@mathysgrapotte mathysgrapotte added the enhancement New feature or request label Oct 29, 2024
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