Conda env fails to create #71

JohnRachid · 2023-04-10T18:51:02Z

Check Documentation

I have checked the following places for your error:

Description of the bug

The conda environment fails to create both with nextflow and by itself.

Steps to reproduce

Steps to reproduce the behavior:
for the documented install process:

`conda config --add channels defaults
conda config --add channels bioconda
conda config --add channels conda-forge

conda create --name env_nf nextflow`

for just trying the clipseq conda environment

conda env create -f clipseq/environment.yml -n clipseq

Expected behaviour

conda environment creates successfully

Log files

Have you provided the following extra information/files:

The command used to run the pipeline
The .nextflow.log file

System

Hardware:
Executor:
OS:
Version

Nextflow Installation

Version:

Container engine

Engine:
version:
Image tag:

Additional context

after just trying to create the base conda image i get

`Collecting package metadata (repodata.json): done
Solving environment: -
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
Building graph of deps: 0%| Examining conda-forge::pigz=2.3.4: 0%| Examining bioconda::fastqc=0.11.9: 4%|███████▉ Examining @/linux-64::__archspec==x86_64=0: 8%|███████████████▏ Examining bioconda::preseq=2.0.3: 12%|████████████████████████ Examining bioconda::pureclip=1.3.1: 16%|███████████████████████████████▋ Examining bioconda::pureclip=1.3.1: 20%|███████████████████████████████████████▌ Examining conda-forge::python=3.7.3: 20%|███████████████████████████████████████▍ Examining bioconda::samtools=1.11: 24%|███████████████████████████████████████████████▊ Examining bioconda::umi_tools=1.1.1: 28%|███████████████████████████████████████████████████████▏ Examining @/linux-64::__glibc==2.31=0: 32%|██████████████████████████████████████████████████████████████▍ Examining @/linux-64::__glibc==2.31=0: 36%|██████████████████████████████████████████████████████████████████████▏ Examining bioconda::star=2.6.1d: 36%|████████████████████████████████████████████████████████████████████████▎ Examining bioconda::cutadapt=3.0: 40%|███████████████████████████████████████████████████████████████████████████████▌ Examining bioconda::piranha=1.2.1: 44%|███████████████████████████████████████████████████████████████████████████████████████ Examining bioconda::piranha=1.2.1: 48%|███████████████████████████████████████████████████████████████████████████████████████████████ Examining bioconda::bowtie2=2.4.2: 48%|███████████████████████████████████████████████████████████████████████████████████████████████ Examining conda-forge::pygments=2.5.2: 52%|████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining conda-forge::pygments=2.5.2: 56%|████████████████████████████████████████████████████████████████████████████████████████████████████████████▋ Examining bioconda::subread=2.0.1: 56%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining bioconda::paraclu=9: 60%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining bioconda::paraclu=9: 64%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining bioconda::rseqc=4.0.0: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Examining @/linux-64::__linux==5.4.0=0: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining @/linux-64::__linux==5.4.0=0: 72%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining bioconda::bedtools=2.29.2: 72%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Examining conda-forge::perl=5.26.2: 76%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▋Examining bioconda::meme=5.1.1: 80%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::meme=5.1.1: 84%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::icount=2.0.0: 84%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::pymdown-extensions=6.0: 88%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::pymdown-extensions=6.0: 92%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::multiqc=1.9: 92%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining bioconda::multiqc=1.9: 96%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::markdown=3.1.1: 96%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conda-forge::markdown=3.1.1: 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████ Determining conflicts: 0%| Examining conflict for pigz cutadapt icount: 0%| Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools meme icount pymdown-extensions multiqc markdown: Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools meme icount pymdown-extensions multiqc markdown: Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme __glibc preseq python: 8%|███████▊ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme __glibc preseq python: 12%|███████████▊ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme preseq python: 12%|████████████▋ Examining conflict for cutadapt piranha bowtie2 samtools pigz umi_tools subread bedtools perl paraclu rseqc meme preseq python: 16%|████████████████▉ Examining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools perl meme icount pymdown-extensions multiqc markdExamining conflict for pigz fastqc preseq pureclip python samtools umi_tools cutadapt piranha bowtie2 pygments subread paraclu rseqc bedtools perl meme icount pymdown-extensions multiqc markdExamining conflict for fastqc pureclip meme: 20%|█████████████████████████████████████▊ Examining conflict for fastqc pureclip meme: 24%|█████████████████████████████████████████████▎ Examining conflict for umi_tools icount fastqc rseqc multiqc: 24%|█████████████████████████████████████████▎ Examining conflict for umi_tools icount fastqc rseqc multiqc: 28%|████████████████████████████████████████████████▏ Examining conflict for fastqc bowtie2: 28%|██████████████████████████████████████████████████████▌ Examining conflict for fastqc bowtie2: 32%|██████████████████████████████████████████████████████████████▍ Examining conflict for fastqc rseqc: 32%|███████████████████████████████████████████████████████████████ Examining conflict for fastqc rseqc: 36%|██████████████████████████████████████████████████████████████████████▉ Examining conflict for umi_tools meme icount fastqc rseqc pureclip multiqc: 36%|████████████████████████████████████████████████████████▉ Examining conflict for umi_tools meme icount fastqc rseqc pureclip multiqc: 40%|██████████████████████████████████████████████████████████████▊ Examining conflict for fastqc pureclip rseqc meme: 40%|████████████████████████████████████████████████████████████████████████▊ Examining conflict for fastqc pureclip rseqc meme: 44%|████████████████████████████████████████████████████████████████████████████████ Examining conflict for bowtie2 perl meme fastqc pureclip: 44%|█████████████████████████████████████████████████████████████████████████████ Examining conflict for bowtie2 perl meme fastqc pureclip: 48%|████████████████████████████████████████████████████████████████████████████████████ Examining conflict for cutadapt bowtie2 pygments umi_tools meme icount fastqc rseqc pymdown-extensions multiqc markdown: 48%|█████████████████████████████████████████████████████▊ Examining conflict for cutadapt bowtie2 pygments umi_tools meme icount fastqc rseqc pymdown-extensions multiqc markdown: 52%|██████████████████████████████████████████████████████████▏ Examining conflict for cutadapt piranha bowtie2 samtools umi_tools pygments bedtools meme icount paraclu fastqc rseqc pymdown-extensions multiqc preseq pureclip python markdown: 52%|████████Examining conflict for cutadapt piranha bowtie2 samtools umi_tools pygments bedtools meme icount paraclu fastqc rseqc pymdown-extensions multiqc preseq pureclip python markdown: 56%|████████Examining conflict for fastqc meme: 56%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining conflict for fastqc meme: 60%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining conflict for piranha umi_tools icount rseqc preseq multiqc: 60%|█████████████████████████████████████████████████████████████████████████████████████████████████▊ Examining conflict for piranha umi_tools icount rseqc preseq multiqc: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████▎ Examining conflict for preseq piranha: 64%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ Examining conflict for preseq piranha: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▉ Examining conflict for piranha umi_tools meme icount rseqc preseq multiqc: 68%|███████████████████████████████████████████████████████████████████████████████████████████████████████████▍ Examining conflict for piranha umi_tools meme icount rseqc preseq multiqc: 72%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme icount rseqc preseq pureclip: 72%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme icount rseqc preseq pureclip: 76%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for rseqc preseq piranha: 76%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for rseqc preseq piranha: 80%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme rseqc preseq: 80%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for piranha umi_tools meme rseqc preseq: 84%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for samtools umi_tools icount rseqc pureclip: 84%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for samtools umi_tools icount rseqc pureclip: 88%|█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 88%|████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 92%|████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions pureclip multiqc markdown: 92%|███████████████████████████████████████████████████████Examining conflict for cutadapt piranha bowtie2 pygments umi_tools meme icount rseqc pymdown-extensions pureclip multiqc markdown: 96%|███████████████████████████████████████████████████████Examining conflict for pureclip meme: 96%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for pureclip meme: 100%|████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████Examining conflict for cutadapt bowtie2 samtools umi_tools pygments bedtools meme icount rseqc pymdown-extensions multiqc pureclip python markdown: 100%|██████████████████████████████████████Examining conflict for rseqc pureclip icount: : 26it [04:44, 15.13s/it] failed - /
Solving environment: |
Found conflicts! Looking for incompatible packages.
This can take several minutes. Press CTRL-C to abort.
failed -

UnsatisfiableError: The following specifications were found to be incompatible with each other:

Output in format: Requested package -> Available versions

Package pypy3.9 conflicts for:
bioconda::multiqc=1.9 -> click -> pypy3.9[version='7.3.11.|>=7.3.11|>=7.3.8|>=7.3.9|7.3.9.|7.3.8.']
bioconda::umi_tools=1.1.1 -> future -> pypy3.9[version='>=7.3.11|>=7.3.8|>=7.3.9']
bioconda::bowtie2=2.4.2 -> python[version='>=3.9,<3.10.0a0'] -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.']
conda-forge::pymdown-extensions=6.0 -> python -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.']
conda-forge::markdown=3.1.1 -> python -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.|>=7.3.9|>=7.3.8']
conda-forge::pygments=2.5.2 -> python -> pypy3.9[version='7.3.11.|7.3.9.|7.3.8.|>=7.3.9|>=7.3.8']
bioconda::rseqc=4.0.0 -> numpy -> pypy3.9[version='7.3.11.|>=7.3.11|>=7.3.9|>=7.3.8|7.3.9.|7.3.8.']
bioconda::icount=2.0.0 -> matplotlib -> pypy3.9[version='7.3.11.|>=7.3.11|>=7.3.9|>=7.3.8|7.3.9.|7.3.8.*']

Package libgcc-ng conflicts for:
bioconda::umi_tools=1.1.1 -> libgcc-ng[version='>=7.5.0|>=9.3.0']
bioconda::meme=5.1.1 -> expat[version='>=2.2.9,<2.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=9.3.0|>=4.9|>=12|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::cutadapt=3.0 -> libgcc-ng[version='>=7.5.0']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
conda-forge::pigz=2.3.4 -> libgcc-ng[version='>=7.3.0']
bioconda::subread=2.0.1 -> libgcc-ng[version='>=10.3.0|>=9.3.0|>=7.3.0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=12|>=7.2.0|>=4.9|>=11.2.0']
bioconda::samtools=1.11 -> libgcc-ng[version='>=7.5.0']
bioconda::rseqc=4.0.0 -> libgcc-ng[version='>=10.3.0|>=12|>=9.3.0|>=7.5.0']
bioconda::cutadapt=3.0 -> dnaio[version='>=0.4.2'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.3.0|>=7.2.0|>=4.9|>=11.2.0']
bioconda::preseq=2.0.3 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0']
bioconda::fastqc=0.11.9 -> fontconfig -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::preseq=2.0.3 -> gsl[version='>=2.6,<2.7.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.3.0|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::paraclu=9 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::piranha=1.2.1 -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9']
conda-forge::pymdown-extensions=6.0 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
conda-forge::python=3.7.3 -> libgcc-ng[version='>=7.3.0']
conda-forge::perl=5.26.2 -> libgcc-ng[version='>=4.9|>=7.3.0|>=7.5.0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::bedtools=2.29.2 -> bzip2[version='>=1.0.8,<2.0a0'] -> libgcc-ng[version='>=10.3.0|>=11.2.0|>=12|>=7.5.0|>=9.3.0|>=4.9|>=7.2.0']
bioconda::pureclip=1.3.1 -> bedtools -> libgcc-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=12|>=4.9']
conda-forge::pigz=2.3.4 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=10.3.0|>=12|>=7.5.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::piranha=1.2.1 -> gsl[version='>=2.7,<2.8.0a0'] -> libgcc-ng[version='>=11.2.0|>=7.2.0|>=12']
conda-forge::pygments=2.5.2 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::rseqc=4.0.0 -> bx-python -> libgcc-ng[version='7.2.0.*|>=11.2.0|>=4.9|>=7.3.0|>=9.4.0|>=7.2.0']
conda-forge::python=3.7.3 -> bzip2[version='>=1.0.8,<2.0a0'] -> libgcc-ng[version='>=10.3.0|>=4.9|>=7.5.0|>=9.3.0|>=7.2.0|>=9.4.0|>=11.2.0|>=12']
conda-forge::markdown=3.1.1 -> python -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=11.2.0|>=7.2.0']
bioconda::bowtie2=2.4.2 -> perl -> libgcc-ng[version='>=10.3.0|>=11.2.0|>=4.9|>=7.3.0|>=9.4.0|>=7.2.0|>=12']
bioconda::meme=5.1.1 -> libgcc-ng[version='>=7.3.0|>=7.5.0']
bioconda::bowtie2=2.4.2 -> libgcc-ng[version='>=7.5.0|>=9.3.0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libgcc-ng[version='>=10.3.0|>=12|>=9.4.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::paraclu=9 -> libgcc-ng[version='>=7.5.0']
bioconda::bedtools=2.29.2 -> libgcc-ng[version='>=7.3.0']
bioconda::subread=2.0.1 -> libzlib[version='>=1.2.11,<1.3.0a0'] -> libgcc-ng[version='>=11.2.0|>=12|>=7.5.0|>=4.9|>=7.2.0']

Package cutadapt conflicts for:
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10']
bioconda|bioconda::cutadapt=3.0
bioconda::cutadapt=3.0

Package readline conflicts for:
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.|7.0.']
conda-forge::python=3.7.3 -> readline[version='>=7.0,<8.0a0|>=8.0,<9.0a0']
conda-forge::markdown=3.1.1 -> python -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
conda-forge::pygments=2.5.2 -> python -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|7.|>=8.1.2,<9.0a0|>=8.2,<9.0a0']
bioconda::icount=2.0.0 -> python[version='>=3'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
conda-forge::pymdown-extensions=6.0 -> python -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.0.|7.']
conda-forge::python=3.7.3 -> sqlite[version='>=3.30.1,<4.0a0'] -> readline[version='>=8.1,<9.0a0|>=8.1.2,<9.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> readline[version='6.2.|7.0|>=7.0,<8.0a0|>=8.0,<9.0a0|>=8.1,<9.0a0|>=8.1.2,<9.0a0|>=8.2,<9.0a0|7.']

Package libpng conflicts for:
bioconda::icount=2.0.0 -> matplotlib -> libpng[version='>=1.6.23,<1.7|>=1.6.37,<1.7.0a0|>=1.6.36,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.34,<1.7.0a0|>=1.6.32,<1.7.0a0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libpng[version='>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libpng[version='>=1.6.21,<1.7|>=1.6.22,<1.6.31|>=1.6.32,<1.6.35|>=1.6.34,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0|>=1.6.28,<1.7|>=1.6.23,<1.7|>=1.6.32,<1.7.0a0|>=1.6.39,<1.7.0a0|>=1.6.38,<1.7.0a0']
bioconda::rseqc=4.0.0 -> r-base -> libpng[version='>=1.6.22,<1.6.31|>=1.6.32,<1.6.35|>=1.6.34,<1.7.0a0|>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0|>=1.6.38,<1.7.0a0|>=1.6.39,<1.7.0a0|>=1.6.28,<1.7|>=1.6.32,<1.7.0a0|>=1.6.27,<1.7']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libpng[version='>=1.6.35,<1.7.0a0|>=1.6.37,<1.7.0a0']

Package libgfortran4 conflicts for:
bioconda::preseq=2.0.3 -> openblas -> libgfortran4[version='>=7.5.0']
bioconda::rseqc=4.0.0 -> r-base -> libgfortran4[version='>=7.5.0']
bioconda::meme=5.1.1 -> openmpi[version='>=4.0.5,<4.1.0a0'] -> libgfortran4[version='>=7.5.0']
bioconda::umi_tools=1.1.1 -> scipy -> libgfortran4[version='>=7.5.0']
bioconda::piranha=1.2.1 -> openblas -> libgfortran4[version='>=7.5.0']

Package libxml2 conflicts for:
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0']
bioconda::pureclip=1.3.1 -> meme -> libxml2[version='2.9.|>=2.9.10,<2.10.0a0|>=2.9.12,<2.10.0a0|>=2.9.9,<2.10.0a0|>=2.9.8,<2.10.0a0']
bioconda::meme=5.1.1 -> libxslt[version='>=1.1.33,<2.0a0'] -> libxml2[version='>=2.10.3,<2.11.0a0|>=2.9.14,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.10,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.14,<2.10.0a0|>=2.9.8,<2.10.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libxml2[version='2.9.|>=2.9.10,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.8,<2.11.0a0|>=2.10.3,<2.11.0a0|>=2.9.14,<2.10.0a0|>=2.9.10,<2.10.0a0|>=2.9.8,<2.10.0a0|>=2.9.7,<2.10.0a0|>=2.9.4,<2.10.0a0']
bioconda::rseqc=4.0.0 -> r-base -> libxml2[version='2.9.*|>=2.10.3,<2.11.0a0|>=2.9.14,<2.11.0a0|>=2.9.12,<2.11.0a0|>=2.9.10,<2.11.0a0|>=2.9.9,<2.11.0a0|>=2.9.8,<2.11.0a0|>=2.9.9,<2.10.0a0|>=2.9.8,<2.10.0a0|>=2.9.7,<2.10.0a0|>=2.9.4,<2.10.0a0']

Package libstdcxx-ng conflicts for:
bioconda::rseqc=4.0.0 -> numpy -> libstdcxx-ng[version='7.2.0.*|>=10.3.0|>=12|>=9.4.0|>=7.3.0|>=4.9|>=11.2.0|>=7.5.0|>=9.3.0|>=7.2.0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9|>=7.2.0|>=12|>=11.2.0']
bioconda::bedtools=2.29.2 -> libstdcxx-ng[version='>=7.3.0']
bioconda::meme=5.1.1 -> expat[version='>=2.2.9,<2.3.0a0'] -> libstdcxx-ng[version='>=10.3.0|>=7.3.0|>=9.3.0|>=7.5.0|>=4.9|>=12|>=9.4.0|>=11.2.0|>=7.2.0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::pureclip=1.3.1 -> bedtools -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=4.9']
conda-forge::pygments=2.5.2 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
conda-forge::markdown=3.1.1 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
bioconda::fastqc=0.11.9 -> openjdk[version='>=8.0.144'] -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.3.0|>=7.5.0|>=7.3.0']
bioconda::piranha=1.2.1 -> bamtools[version='>=2.5.1,<2.5.2.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.2.0']
conda-forge::python=3.7.3 -> libffi[version='>=3.2.1,<3.3.0a0'] -> libstdcxx-ng[version='>=4.9|>=7.2.0|>=7.5.0']
bioconda::piranha=1.2.1 -> libstdcxx-ng[version='>=10.3.0|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']
bioconda::paraclu=9 -> libstdcxx-ng[version='>=7.5.0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> libstdcxx-ng[version='>=10.3.0|>=12|>=9.4.0|>=9.3.0|>=7.5.0|>=7.3.0|>=11.2.0|>=4.9|>=7.2.0']
bioconda::bowtie2=2.4.2 -> libstdcxx-ng[version='>=7.5.0|>=9.3.0']
bioconda::preseq=2.0.3 -> libstdcxx-ng[version='>=4.9|>=7.3.0|>=7.5.0']
conda-forge::python=3.7.3 -> libstdcxx-ng[version='>=7.3.0']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0'] -> libstdcxx-ng[version='>=7.3.0|>=7.5.0']
bioconda::preseq=2.0.3 -> libgcc -> libstdcxx-ng[version='>=7.2.0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> libstdcxx-ng[version='>=11.2.0|>=7.3.0|>=9.4.0|>=4.9|>=7.2.0']
conda-forge::pymdown-extensions=6.0 -> python -> libstdcxx-ng[version='>=11.2.0|>=4.9|>=7.3.0|>=7.5.0|>=9.3.0|>=9.4.0|>=7.2.0']

Package python_abi conflicts for:
conda-forge::pymdown-extensions=6.0 -> python -> python_abi[version='3.6|3.7|3.8.|3.8|3.9',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> python_abi[version='3.6|3.7|3.8|3.8.|3.9',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73']
bioconda::rseqc=4.0.0 -> python_abi[version='3.10.|3.6.|3.9.|3.7.|3.8.',build='_cp310|_cp36m|_cp39|_cp37m|_cp38']
bioconda::cutadapt=3.0 -> python_abi[version='3.6.|3.8.|3.7.',build='_cp36m|_cp38|_cp37m']
bioconda::umi_tools=1.1.1 -> python_abi[version='3.6.|3.7.|3.8.',build='_cp36m|_cp37m|_cp38']
bioconda::meme=5.1.1 -> python_abi[version='2.7.|3.6.|3.7.|3.8.',build='_cp27mu|_cp36m|_cp37m|_cp38']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> python_abi[version='3.6|3.7|3.8|3.8.',build='_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73']
bioconda::piranha=1.2.1 -> python_abi=2.7[build=_cp27mu]
bioconda::umi_tools=1.1.1 -> future -> python_abi[version='2.7.|3.10.|3.9|3.9.|3.8|3.7|3.6|3.11.|3.8.',build='_cp311|_cp27mu|_pypy36_pp73|_pypy37_pp73|_cp39|_cp310|_pypy39_pp73|_pypy38_pp73|_graalpy223_38_native']
conda-forge::pygments=2.5.2 -> python -> python_abi[version='3.10.|3.6|3.7|3.8.|3.8|3.9|3.9.|3.7.|3.8.|3.11.|3.6.',build='_cp36m|_cp311|_cp310|_cp37m|_cp39|_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73|_cp38']
conda-forge::markdown=3.1.1 -> python -> python_abi[version='3.10.|3.6|3.7|3.8.|3.8|3.9|3.9.|3.7.|3.8.|3.11.|3.6.',build='_cp36m|_cp311|_cp310|_cp37m|_cp39|_pypy36_pp73|_pypy37_pp73|_graalpy223_38_native|_pypy38_pp73|_pypy39_pp73|_cp38']
bioconda::multiqc=1.9 -> click -> python_abi[version='2.7.|3.10.|3.11.|3.8|3.8.|3.9.|3.9|3.7.|3.7|3.6|3.6.|3.8.',build='_graalpy223_38_native|_cp27mu|_cp36m|_pypy36_pp73|_cp37m|_cp310|_cp311|_cp39|_pypy38_pp73|_cp38|_pypy39_pp73|_pypy37_pp73']
bioconda::rseqc=4.0.0 -> bx-python -> python_abi[version='2.7.|3.8|3.9|3.11.|3.7|3.6|3.8.',build='_graalpy223_38_native|_pypy37_pp73|_cp311|_pypy39_pp73|_pypy38_pp73|_cp27mu|_pypy36_pp73']
bioconda::bowtie2=2.4.2 -> python_abi[version='3.6.|3.7.|3.8.|3.9.',build='_cp36m|_cp37m|_cp38|_cp39']
bioconda::pureclip=1.3.1 -> meme -> python_abi[version='2.7.|3.10.|3.6.|3.7.|3.9.|3.8.',build='_cp39|_cp310|_cp36m|_cp37m|_cp27mu|_cp38']
bioconda::cutadapt=3.0 -> dnaio[version='>=0.4.2'] -> python_abi[version='3.10.|3.9.|3.6|3.11.|3.7|3.8|3.8.',build='_graalpy223_38_native|_pypy38_pp73|_pypy37_pp73|_cp311|_pypy36_pp73|_cp310|_cp39']
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10'] -> python_abi[version='2.7.|3.10.|3.7.|3.8.|3.9.|3.6.|3.9|3.11.|3.8|3.7|3.6|3.8.',build='_graalpy223_38_native|_pypy36_pp73|_pypy37_pp73|_pypy38_pp73|_cp311|_cp36m|_cp310|_cp37m|_cp38|_cp39|_pypy39_pp73|*_cp27mu']

Package libuuid conflicts for:
conda-forge::markdown=3.1.1 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
bioconda::icount=2.0.0 -> python[version='>=3'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0']
conda-forge::pygments=2.5.2 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']
conda-forge::pymdown-extensions=6.0 -> python -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> libuuid[version='>=1.0.3,<2.0a0|>=1.41.5,<2.0a0|>=2.32.1,<3.0a0|>=2.38.1,<3.0a0']
bioconda::cutadapt=3.0 -> python[version='>=3.8,<3.9.0a0'] -> libuuid[version='>=2.32.1,<3.0a0']

Package importlib-metadata conflicts for:
bioconda::multiqc=1.9 -> click -> importlib-metadata[version='>=4.4']
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> importlib-metadata[version='>=4.4|>=4.8']
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1'] -> importlib-metadata[version='>=4.4']

Package tzdata conflicts for:
conda-forge::pymdown-extensions=6.0 -> python -> tzdata
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> tzdata
bioconda::icount=2.0.0 -> python[version='>=3'] -> tzdata
conda-forge::markdown=3.1.1 -> python -> tzdata
bioconda::bowtie2=2.4.2 -> python[version='>=3.9,<3.10.0a0'] -> tzdata
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> tzdata
conda-forge::pygments=2.5.2 -> python -> tzdata

Package bedtools conflicts for:
bioconda|bioconda::bedtools=2.29.2
bioconda::pureclip=1.3.1 -> bedtools
bioconda::bedtools=2.29.2
bioconda::icount=2.0.0 -> pybedtools -> bedtools
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0']

Package certifi conflicts for:
bioconda::umi_tools=1.1.1 -> matplotlib-base -> certifi[version='>=2020.06.20']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> certifi[version='>=2016.09|>=2016.9.26|>=2017.4.17|>=2020.06.20']
conda-forge::pygments=2.5.2 -> setuptools -> certifi[version='>=2016.09|>=2016.9.26']
conda-forge::markdown=3.1.1 -> setuptools[version='>=36'] -> certifi[version='>=2016.09|>=2016.9.26']

Package star conflicts for:
bioconda::star=2.6.1d
bioconda::icount=2.0.0 -> star
bioconda|bioconda::star=2.6.1d

Package gsl conflicts for:
bioconda::preseq=2.0.3 -> gsl[version='1.16.|2.2.|>=2.2.1,<2.3.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0']
bioconda::rseqc=4.0.0 -> r-base -> gsl[version='>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.5,<2.6.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']
bioconda::piranha=1.2.1 -> gsl[version='1.16.|2.2.|>=2.2.1,<2.3.0a0|>=2.4,<2.5.0a0|>=2.6,<2.7.0a0|>=2.7,<2.8.0a0']

Package setuptools conflicts for:
bioconda::multiqc=1.9 -> setuptools
bioconda::rseqc=4.0.0 -> bx-python -> setuptools
bioconda::umi_tools=1.1.1 -> matplotlib-base -> setuptools[version='<60.0.0']
bioconda::multiqc=1.9 -> markdown -> setuptools[version='>=36']
conda-forge::markdown=3.1.1 -> setuptools[version='>=36']
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1'] -> setuptools[version='>=36']
conda-forge::python=3.7.3 -> pip -> setuptools
bioconda::icount=2.0.0 -> matplotlib -> setuptools[version='<60.0.0']
conda-forge::pygments=2.5.2 -> setuptools

Package pygments conflicts for:
conda-forge::pygments=2.5.2
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> pygments[version='>2.0|>=2.0|>=2.12|>=2.13']
conda-forge|conda-forge::pygments=2.5.2

Package bcftools conflicts for:
bioconda::icount=2.0.0 -> pysam -> bcftools[version='1.3|1.3.1.|1.3.1|1.5.|1.6.|1.6|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']
bioconda::rseqc=4.0.0 -> pysam -> bcftools[version='1.3|1.3.1.|1.3.1|1.5.|1.6.|1.6|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']

Package ncurses conflicts for:
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::icount=2.0.0 -> python[version='>=3'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::markdown=3.1.1 -> python -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.|>=6.3,<7.0a0|>=6.4,<7.0a0']
bioconda::meme=5.1.1 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::pygments=2.5.2 -> python -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::python=3.7.3 -> ncurses[version='>=6.1,<7.0.0a0']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|6.0.|>=6.0,<7.0a0|>=5.9*|>=5.9.']
bioconda::umi_tools=1.1.1 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
conda-forge::pymdown-extensions=6.0 -> python -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<6.3.0a0|>=6.3,<7.0a0|>=6.2,<7.0.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> ncurses[version='5.9.|5.9|>=6.1,<7.0.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.4,<7.0a0|>=6.2,<7.0a0|>=6.1,<7.0a0|>=6.0,<7.0a0|6.0.']
bioconda::samtools=1.11 -> ncurses[version='>=6.2,<6.3.0a0']
conda-forge::python=3.7.3 -> readline[version='>=8.0,<9.0a0'] -> ncurses[version='5.9.|>=6.1,<7.0a0|>=6.2,<7.0.0a0|>=6.3,<7.0a0|>=6.2,<7.0a0|>=6.4,<7.0a0|>=6.0,<7.0a0|6.0.*']

Package numpy-base conflicts for:
bioconda::multiqc=1.9 -> numpy -> 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bioconda::rseqc=4.0.0 -> numpy -> 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bioconda::umi_tools=1.1.1 -> numpy[version='>=1.7'] -> 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bioconda::icount=2.0.0 -> numpy -> 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Package pypy3.7 conflicts for:
bioconda::umi_tools=1.1.1 -> future -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.3|>=7.3.7|>=7.3.5|>=7.3.4']
conda-forge::pymdown-extensions=6.0 -> python -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.']
bioconda::meme=5.1.1 -> python[version='>=3.7,<3.8.0a0'] -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.']
conda-forge::pygments=2.5.2 -> python -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.7|>=7.3.5|>=7.3.3']
bioconda::multiqc=1.9 -> click -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.3|>=7.3.4|>=7.3.5|>=7.3.7']
bioconda::rseqc=4.0.0 -> numpy -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.3|>=7.3.4|>=7.3.5|>=7.3.7']
bioconda::icount=2.0.0 -> matplotlib -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.3|>=7.3.4|>=7.3.5|>=7.3.7']
bioconda::bowtie2=2.4.2 -> python[version='>=3.7,<3.8.0a0'] -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.']
conda-forge::markdown=3.1.1 -> python -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.7|>=7.3.5|>=7.3.3']
bioconda::cutadapt=3.0 -> xopen[version='>=1.0.0'] -> pypy3.7[version='7.3.3.|7.3.4.|7.3.5.|7.3.7.|>=7.3.3|>=7.3.4|>=7.3.5|>=7.3.7']

Package markdown conflicts for:
conda-forge::markdown=3.1.1
bioconda::multiqc=1.9 -> markdown
conda-forge|conda-forge::markdown=3.1.1
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1']

Package yaml conflicts for:
bioconda::multiqc=1.9 -> pyyaml[version='>=4'] -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.5,<0.3.0a0']
bioconda::pureclip=1.3.1 -> meme -> yaml[version='>=0.1.7,<0.2.0a0|>=0.2.2,<0.3.0a0|>=0.2.4,<0.3.0a0|>=0.2.5,<0.3.0a0']
bioconda::meme=5.1.1 -> yaml[version='>=0.2.4,<0.3.0a0|>=0.2.5,<0.3.0a0']

Package libdeflate conflicts for:
bioconda::rseqc=4.0.0 -> pysam -> libdeflate[version='>=1.0,<1.1.0a0|>=1.10,<1.11.0a0|>=1.13,<1.14.0a0|>=1.9,<1.10.0a0|>=1.7,<1.8.0a0|>=1.6,<1.7.0a0|>=1.5,<1.6.0a0|>=1.3,<1.4.0a0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libdeflate[version='>=1.0,<1.1.0a0|>=1.13,<1.14.0a0|>=1.10,<1.11.0a0|>=1.9,<1.10.0a0|>=1.7,<1.8.0a0|>=1.6,<1.7.0a0|>=1.5,<1.6.0a0|>=1.3,<1.4.0a0']
bioconda::umi_tools=1.1.1 -> pysam[version='>=0.16.0.1'] -> libdeflate[version='>=1.10,<1.11.0a0|>=1.13,<1.14.0a0|>=1.9,<1.10.0a0|>=1.7,<1.8.0a0|>=1.6,<1.7.0a0']
bioconda::pureclip=1.3.1 -> bedtools -> libdeflate[version='>=1.0,<1.1.0a0']
bioconda::samtools=1.11 -> htslib[version='>=1.11,<1.12.0a0'] -> libdeflate[version='>=1.6,<1.7.0a0|>=1.7,<1.8.0a0']

Package ca-certificates conflicts for:
bioconda::meme=5.1.1 -> python[version='>=2.7,<2.8.0a0'] -> ca-certificates
conda-forge::python=3.7.3 -> openssl[version='>=1.1.1a,<1.1.2a'] -> ca-certificates
conda-forge::pygments=2.5.2 -> python -> ca-certificates
conda-forge::markdown=3.1.1 -> python -> ca-certificates
conda-forge::pymdown-extensions=6.0 -> python -> ca-certificates

Package libcurl conflicts for:
bioconda::rseqc=4.0.0 -> pybigwig -> libcurl[version='>=7.58.0,<8.0a0|>=7.60.0,<8.0a0|>=7.61.0,<8.0a0|>=7.61.1,<8.0a0|>=7.64.0,<8.0a0|>=7.64.1,<8.0a0|>=7.69.1,<8.0a0|>=7.71.1,<8.0a0|>=7.75.0,<8.0a0|>=7.81.0,<8.0a0|>=7.83.1,<8.0a0|>=7.87.0,<8.0a0|>=7.86.0,<8.0a0|>=7.82.0,<8.0a0|>=7.79.1,<8.0a0|>=7.88.1,<8.0a0|>=7.85.0,<8.0a0|>=7.80.0,<8.0a0|>=7.78.0,<8.0a0|>=7.77.0,<8.0a0|>=7.76.1,<8.0a0|>=7.71.0,<8.0a0|>=7.62.0,<8.0a0']
bioconda::umi_tools=1.1.1 -> pysam[version='>=0.16.0.1'] -> libcurl[version='>=7.69.1,<8.0a0|>=7.71.1,<8.0a0|>=7.75.0,<8.0a0|>=7.79.1,<8.0a0|>=7.81.0,<8.0a0|>=7.82.0,<8.0a0|>=7.83.1,<8.0a0|>=7.86.0,<8.0a0|>=7.87.0,<8.0a0']
bioconda::icount=2.0.0 -> pysam -> libcurl[version='>=7.69.1,<8.0a0|>=7.71.1,<8.0a0|>=7.75.0,<8.0a0|>=7.79.1,<8.0a0|>=7.81.0,<8.0a0|>=7.82.0,<8.0a0|>=7.83.1,<8.0a0|>=7.86.0,<8.0a0|>=7.87.0,<8.0a0']
bioconda::samtools=1.11 -> htslib[version='>=1.11,<1.12.0a0'] -> libcurl[version='>=7.71.1,<8.0a0']

Package python conflicts for:
bioconda::multiqc=1.9 -> python[version='>=3.6']
bioconda::rseqc=4.0.0 -> python[version='>=3.10,<3.11.0a0|>=3.6,<3.7.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
bioconda::umi_tools=1.1.1 -> future -> python[version='2.7.|3.4.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.8|>=3.9,<3.10.0a0|>=3.5,<3.6.0a0|>=3.11,<3.12.0a0|>=3.7.1,<3.8.0a0|3.8.|3.7.']
bioconda::rseqc=4.0.0 -> bx-python -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.11,<3.12.0a0|3.4.|>=3.7|>=3.6|>=3|<3.0.0|3.10.|3.9.|3.7.|3.8.']
bioconda::multiqc=1.9 -> click -> python[version='2.7.|3.5.|3.6.|>=3.10,<3.11.0a0|>=3.11,<3.12.0a0|>=3.8|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|>=3.7,<3.8.0a0|>=3.6,<3.7.0a0|3.4.|>=3|>=2.7,<2.8.0a0|>=3.5,<3.6.0a0|>=3.7|>=3.5|>=3.7,<4.0|>=3.6,<4.0']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0|>=3.8,<3.9.0a0|>=3.7,<3.8.0a0']
conda-forge|conda-forge::python=3.7.3
conda-forge::python=3.7.3
bioconda::piranha=1.2.1 -> python_abi=2.7[build=_cp27mu] -> python=2.7
conda-forge::pygments=2.5.2 -> setuptools -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.7,<3.8.0a0|>=3.7|>=3.8|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.11,<3.12.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0|3.4.']
bioconda::umi_tools=1.1.1 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0']
conda-forge::markdown=3.1.1 -> python
conda-forge::markdown=3.1.1 -> setuptools[version='>=36'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.7,<3.8.0a0|>=3.7|>=3.8|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.11,<3.12.0a0|>=3.6,<3.7.0a0|>=3.5,<3.6.0a0']
conda-forge::pygments=2.5.2 -> python
bioconda::cutadapt=3.0 -> dnaio[version='>=0.4.2'] -> python[version='3.6.|>=3.10,<3.11.0a0|>=3.9,<3.10.0a0|>=3.11,<3.12.0a0|3.8.|3.7.']
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10'] -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0|>=3.9,<3.10.0a0|3.4.|>=3.11,<3.12.0a0|>=3.7|>=3.5|>=3.7.1,<3.8.0a0|<3.0.0|>=3.8|>=3.6']
bioconda::pureclip=1.3.1 -> meme -> python[version='2.7.|3.5.|3.6.|>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.5,<3.6.0a0|3.4.']
conda-forge::pymdown-extensions=6.0 -> markdown[version='>=3.0.1'] -> python[version='>=2.7,<2.8.0a0|>=3.10,<3.11.0a0|>=3.11,<3.12.0a0|>=3.5|>=3.6|>=3.7,<3.8.0a0|>=3.9,<3.10.0a0|>=3.8,<3.9.0a0|>=3.6,<3.7.0a0']
bioconda::bowtie2=2.4.2 -> python_abi=3.8[build=_cp38] -> python[version='3.6.|3.7.|3.8.|3.9.']
conda-forge::pymdown-extensions=6.0 -> python
bioconda::icount=2.0.0 -> python[version='>=3.6,<3.7.0a0|>=3|>=3.5,<3.6.0a0']
bioconda::meme=5.1.1 -> python_abi=3.8[build=_cp38] -> python[version='2.7.|3.6.|3.7.|3.8.*']
bioconda::meme=5.1.1 -> python[version='>=2.7,<2.8.0a0|>=3.6,<3.7.0a0|>=3.7,<3.8.0a0|>=3.8,<3.9.0a0']

Package libzlib conflicts for:
bioconda::piranha=1.2.1 -> bamtools[version='>=2.5.1,<2.5.2.0a0'] -> libzlib[version='>=1.2.11,<1.3.0a0']
bioconda::subread=2.0.1 -> libzlib[version='>=1.2.11,<1.3.0a0']
bioconda::preseq=2.0.3 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
conda-forge::python=3.7.3 -> sqlite[version='>=3.30.1,<4.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13|>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
conda-forge::pygments=2.5.2 -> python -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::rseqc=4.0.0 -> bx-python -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::subread=2.0.1 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
bioconda::umi_tools=1.1.1 -> pysam[version='>=0.16.0.1'] -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::samtools=1.11 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
conda-forge::markdown=3.1.1 -> python -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
conda-forge::pigz=2.3.4 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13|>=1.2.11,<1.3.0a0|>=1.2.13,<1.3.0a0',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
conda-forge::pymdown-extensions=6.0 -> python -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::paraclu=9 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
bioconda::bedtools=2.29.2 -> zlib[version='>=1.2.11,<1.3.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0'] -> libzlib[version='1.2.11|1.2.11|1.2.11|1.2.12|1.2.12|1.2.12|1.2.12|1.2.12|1.2.13|>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0',build='h166bdaf_1014|h166bdaf_0|h166bdaf_1|h166bdaf_2|h166bdaf_3|h166bdaf_4|h36c2ea0_1013|h36c2ea0_1012']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.13,<1.3.0a0']
bioconda::pureclip=1.3.1 -> bedtools -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> libzlib[version='>=1.2.11,<1.3.0a0|>=1.2.12,<1.3.0a0|>=1.2.13,<1.3.0a0']

Package gdbm conflicts for:
bioconda::bowtie2=2.4.2 -> perl -> gdbm[version='>=1.18|>=1.18,<1.19.0a0']
bioconda::fastqc=0.11.9 -> perl -> gdbm[version='>=1.18|>=1.18,<1.19.0a0']

Package pigz conflicts for:
conda-forge::pigz=2.3.4
bioconda::cutadapt=3.0 -> pigz
bioconda::icount=2.0.0 -> cutadapt[version='>=1.10'] -> pigz

Package xz conflicts for:
bioconda::pureclip=1.3.1 -> bedtools -> xz[version='>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0']
bioconda::samtools=1.11 -> htslib[version='>=1.11,<1.12.0a0'] -> xz[version='>=5.2.5,<5.3.0a0']
bioconda::bedtools=2.29.2 -> xz[version='>=5.2.4,<5.3.0a0']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> xz[version='5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0'] -> xz[version='5.2.|>=5.2.10,<6.0a0|>=5.2.4,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<5.3.0a0|>=5.2.3,<6.0a0']
bioconda::cutadapt=3.0 -> python[version='>=3.6,<3.7.0a0'] -> xz[version='5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0']
bioconda::bowtie2=2.4.2 -> python[version='>=3.8,<3.9.0a0'] -> xz[version='5.2.|>=5.2.10,<6.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<5.3.0a0|>=5.2.8,<6.0a0|>=5.2.3,<6.0a0']
conda-forge::pygments=2.5.2 -> python -> xz[version='5.0.|5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bioconda::umi_tools=1.1.1 -> pysam[version='>=0.16.0.1'] -> xz[version='5.2.|>=5.2.10,<6.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<5.3.0a0|>=5.2.3,<6.0a0']
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> xz[version='5.0.|5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
conda-forge::python=3.7.3 -> xz[version='>=5.2.4,<5.3.0a0']
conda-forge::markdown=3.1.1 -> python -> xz[version='5.0.|5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
conda-forge::pymdown-extensions=6.0 -> python -> xz[version='5.0.|5.2.|>=5.2.3,<5.3.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.10,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bioconda::rseqc=4.0.0 -> pysam -> xz[version='5.2.|>=5.2.10,<6.0a0|>=5.2.4,<5.3.0a0|>=5.2.5,<5.3.0a0|>=5.2.6,<5.3.0a0|>=5.2.6,<6.0a0|>=5.2.8,<6.0a0|>=5.2.5,<6.0a0|>=5.2.3,<5.3.0a0|>=5.2.4,<6.0a0|>=5.2.3,<6.0a0']
bioconda::meme=5.1.1 -> xz[version='>=5.2.5,<5.3.0a0']

Package libexpat conflicts for:
conda-forge::pymdown-extensions=6.0 -> python -> libexpat[version='>=2.5.0,<3.0a0']
bioconda::multiqc=1.9 -> python[version='>=3.6'] -> libexpat[version='>=2.5.0,<3.0a0']
conda-forge::markdown=3.1.1 -> python -> libexpat[version='>=2.5.0,<3.0a0']
conda-forge::pygments=2.5.2 -> python -> libexpat[version='>=2.5.0,<3.0a0']
bioconda::icount=2.0.0 -> python[version='>=3'] -> libexpat[version='>=2.5.0,<3.0a0']

Package pysam conflicts for:
bioconda::icount=2.0.0 -> pybedtools -> pysam[version='>=0.16|>=0.8.1']
bioconda::umi_tools=1.1.1 -> pysam[version='>=0.16.0.1']
bioconda::icount=2.0.0 -> pysam
bioconda::rseqc=4.0.0 -> pysam

Package packaging conflicts for:
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> packaging[version='>=21.0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> packaging[version='>=20.0']
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> packaging[version='>=20.0']

Package expat conflicts for:
bioconda::pureclip=1.3.1 -> meme -> expat[version='>=2.2.10,<2.3.0a0|>=2.4.2,<3.0a0|>=2.4.3,<3.0a0|>=2.4.6,<3.0a0|>=2.4.8,<3.0a0|>=2.2.9,<2.3.0a0|>=2.2.5,<2.3.0a0']
bioconda::meme=5.1.1 -> expat[version='>=2.2.9,<2.3.0a0']
bioconda::meme=5.1.1 -> perl-xml-parser -> expat[version='2.2.*|>=2.2.5,<3.0.0a0|>=2.3.0,<3.0a0|>=2.4.1,<3.0a0|>=2.2.5,<2.3.0a0|>=2.4.9,<3.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> expat[version='>=2.4.6,<3.0a0|>=2.4.7,<3.0a0|>=2.4.8,<3.0a0|>=2.4.9,<3.0a0|>=2.5.0,<3.0a0']

Package libgfortran5 conflicts for:
bioconda::preseq=2.0.3 -> openblas -> libgfortran5[version='>=10.3.0|>=10.4.0|>=9.4.0|>=9.3.0']
bioconda::rseqc=4.0.0 -> numpy -> libgfortran5[version='>=10.3.0|>=10.4.0|>=11.2.0|>=11.3.0|>=9.4.0|>=9.3.0']
bioconda::umi_tools=1.1.1 -> numpy[version='>=1.7'] -> libgfortran5[version='>=10.3.0|>=10.4.0|>=11.2.0|>=11.3.0|>=9.4.0|>=9.3.0']
bioconda::icount=2.0.0 -> numpy -> libgfortran5[version='>=11.2.0']
bioconda::multiqc=1.9 -> numpy -> libgfortran5[version='>=11.2.0']
bioconda::meme=5.1.1 -> openmpi[version='>=4.0.5,<4.1.0a0'] -> libgfortran5[version='>=9.3.0']
bioconda::piranha=1.2.1 -> openblas -> libgfortran5[version='>=10.3.0|>=10.4.0|>=9.4.0|>=9.3.0']

Package libopenblas conflicts for:
bioconda::multiqc=1.9 -> numpy -> libopenblas[version='>=0.2.20,<0.2.21.0a0|>=0.3.2,<0.3.3.0a0|>=0.3.20,<1.0a0|>=0.3.3,<1.0a0']
bioconda::preseq=2.0.3 -> gsl[version='>=2.6,<2.7.0a0'] -> libopenblas[version='0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.13|0.3.13|0.3.15|0.3.15|0.3.15|0.3.15|0.3.16|0.3.16|0.3.17|0.3.17|0.3.17|0.3.17|0.3.18|0.3.18|0.3.20|0.3.20|0.3.20|0.3.20|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|>=0.3.3,<1.0a0|0.3.9|0.3.8|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.6|0.3.6|0.3.6|0.3.6|0.3.21|0.3.20|0.3.20|0.3.18|0.3.17|0.3.13|0.3.6|0.3.6|0.3.6|0.3.3|0.3.3|0.3.3|>=0.3.2,<0.3.3.0a0|>=0.2.20,<0.2.21.0a0',build='h5a2b251_2|h5a2b251_2|hf726d26_1|hf726d26_0|h6e990d7_3|h6e990d7_4|h6e990d7_6|h6e990d7_0|h6e990d7_3|h5ec1e0e_4|h5ec1e0e_7|h5ec1e0e_0|openmp_h709eae2_1|pthreads_hb3c22a3_1|openmp_h709eae2_3|pthreads_hb3c22a3_4|openmp_h709eae2_4|openmp_h709eae2_5|openmp_h59f9010_0|openmp_h709eae2_1|pthreads_h8fe5266_0|pthreads_h8fe5266_0|openmp_h3d5035f_1|pthreads_h8fe5266_1|openmp_h3d5035f_1|openmp_h74cd887_3|pthreads_h78a6416_3|openmp_h74cd887_2|pthreads_h78a6416_2|pthreads_h78a6416_1|pthreads_h78a6416_0|openmp_h74cd887_0|openmp_h74cd887_1|pthreads_h78a6416_1|openmp_h74cd887_0|pthreads_h78a6416_0|pthreads_h8fe5266_0|openmp_h3d5035f_0|pthreads_h8fe5266_0|openmp_h3d5035f_0|openmp_h3d5035f_0|pthreads_h8fe5266_0|pthreads_h8fe5266_1|openmp_h3d5035f_0|openmp_h3d5035f_0|pthreads_h4812303_1|openmp_h59f9010_1|pthreads_hb3c22a3_1|openmp_h709eae2_0|pthreads_hb3c22a3_0|pthreads_h4812303_0|pthreads_hb3c22a3_5|pthreads_h4812303_5|openmp_h59f9010_5|pthreads_hb3c22a3_3|pthreads_hb3c22a3_2|openmp_h709eae2_2|h5ec1e0e_0|h5ec1e0e_0|h5ec1e0e_6|h5ec1e0e_5|h6e990d7_2|h6e990d7_1|h6e990d7_5|h043d6bf_0|h043d6bf_1|h043d6bf_0|h4367d64_0|h5a2b251_0|h5a2b251_1|h5a2b251_0|h5a2b251_3|h5a2b251_1']
bioconda::umi_tools=1.1.1 -> numpy[version='>=1.7'] -> libopenblas[version='>=0.2.20,<0.2.21.0a0|>=0.3.2,<0.3.3.0a0|>=0.3.20,<1.0a0|>=0.3.3,<1.0a0|>=0.3.21,<1.0a0']
bioconda::icount=2.0.0 -> numpy -> libopenblas[version='>=0.2.20,<0.2.21.0a0|>=0.3.2,<0.3.3.0a0|>=0.3.20,<1.0a0|>=0.3.3,<1.0a0']
bioconda::rseqc=4.0.0 -> numpy -> libopenblas[version='>=0.2.20,<0.2.21.0a0|>=0.3.2,<0.3.3.0a0|>=0.3.20,<1.0a0|>=0.3.3,<1.0a0']
bioconda::piranha=1.2.1 -> gsl[version='>=2.7,<2.8.0a0'] -> libopenblas[version='0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.10|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.12|0.3.13|0.3.13|0.3.15|0.3.15|0.3.15|0.3.15|0.3.16|0.3.16|0.3.17|0.3.17|0.3.17|0.3.17|0.3.18|0.3.18|0.3.20|0.3.20|0.3.20|0.3.20|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|0.3.21|>=0.2.20,<0.2.21.0a0|>=0.3.20,<1.0a0|>=0.3.3,<1.0a0|0.3.9|0.3.8|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.7|0.3.6|0.3.6|0.3.6|0.3.6|0.3.21|0.3.20|0.3.20|0.3.18|0.3.17|0.3.13|0.3.6|0.3.6|0.3.6|0.3.3|0.3.3|0.3.3|>=0.3.2,<0.3.3.0a0',build='h5a2b251_2|h5a2b251_2|hf726d26_1|hf726d26_0|h6e990d7_3|h6e990d7_4|h6e990d7_6|h6e990d7_0|h6e990d7_3|h5ec1e0e_4|h5ec1e0e_7|h5ec1e0e_0|openmp_h709eae2_1|pthreads_hb3c22a3_1|openmp_h709eae2_3|pthreads_hb3c22a3_4|openmp_h709eae2_4|openmp_h709eae2_5|openmp_h59f9010_0|openmp_h709eae2_1|pthreads_h8fe5266_0|pthreads_h8fe5266_0|openmp_h3d5035f_1|pthreads_h8fe5266_1|openmp_h3d5035f_1|openmp_h74cd887_3|pthreads_h78a6416_3|openmp_h74cd887_2|pthreads_h78a6416_2|pthreads_h78a6416_1|pthreads_h78a6416_0|openmp_h74cd887_0|openmp_h74cd887_1|pthreads_h78a6416_1|openmp_h74cd887_0|pthreads_h78a6416_0|pthreads_h8fe5266_0|openmp_h3d5035f_0|pthreads_h8fe5266_0|openmp_h3d5035f_0|openmp_h3d5035f_0|pthreads_h8fe5266_0|pthreads_h8fe5266_1|openmp_h3d5035f_0|openmp_h3d5035f_0|pthreads_h4812303_1|openmp_h59f9010_1|pthreads_hb3c22a3_1|openmp_h709eae2_0|pthreads_hb3c22a3_0|pthreads_h4812303_0|pthreads_hb3c22a3_5|pthreads_h4812303_5|openmp_h59f9010_5|pthreads_hb3c22a3_3|pthreads_hb3c22a3_2|openmp_h709eae2_2|h5ec1e0e_0|h5ec1e0e_0|h5ec1e0e_6|h5ec1e0e_5|h6e990d7_2|h6e990d7_1|h6e990d7_5|h043d6bf_0|h043d6bf_1|h043d6bf_0|h4367d64_0|h5a2b251_0|h5a2b251_1|h5a2b251_0|h5a2b251_3|h5a2b251_1']

Package colorama conflicts for:
bioconda::icount=2.0.0 -> sphinx[version='>=1.4'] -> colorama[version='>=0.3.5|>=0.4.5']
bioconda::multiqc=1.9 -> click -> colorama

Package icu conflicts for:
bioconda::multiqc=1.9 -> matplotlib-base[version='>=2.1.1'] -> icu[version='>=58.2,<59.0a0|>=64.2,<65.0a0|>=67.1,<68.0a0']
bioconda::icount=2.0.0 -> matplotlib -> icu[version='>=58.2,<59.0a0']
bioconda::rseqc=4.0.0 -> r-base -> icu[version='54.|56.|58.|>=58.2,<59.0a0|>=64.2,<65.0a0|>=67.1,<68.0a0|>=68.1,<69.0a0|>=69.1,<70.0a0|>=70.1,<71.0a0|>=72.1,<73.0a0']
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0'] -> icu[version='69.|>=69.1,<70.0a0|>=70.1,<71.0a0|>=68.1,<69.0a0|>=67.1,<68.0a0|>=58.2,<59.0a0']
bioconda::umi_tools=1.1.1 -> matplotlib-base -> icu[version='>=58.2,<59.0a0|>=64.2,<65.0a0|>=67.1,<68.0a0']
bioconda::meme=5.1.1 -> icu[version='>=64.2,<65.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> icu[version='58.*|>=58.2,<59.0a0|>=64.2,<65.0a0|>=67.1,<68.0a0|>=68.1,<69.0a0']
bioconda::pureclip=1.3.1 -> meme -> icu[version='>=58.2,<59.0a0|>=64.2,<65.0a0|>=68.1,<69.0a0|>=68.2,<69.0a0|>=69.1,<70.0a0']

Package libgcc conflicts for:
bioconda::umi_tools=1.1.1 -> scipy -> libgcc
bioconda::rseqc=4.0.0 -> bx-python -> libgcc
bioconda::preseq=2.0.3 -> libgcc
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> libgcc
bioconda::pureclip=1.3.1 -> bedtools -> libgcc
bioconda::piranha=1.2.1 -> libgcc
bioconda::meme=5.1.1 -> ghostscript -> libgcc

Package meme conflicts for:
bioconda::meme=5.1.1
bioconda::pureclip=1.3.1 -> meme
bioconda|bioconda::meme=5.1.1

Package perl conflicts for:
bioconda::fastqc=0.11.9 -> perl
bioconda::pureclip=1.3.1 -> meme -> perl[version='5.22.0.|>=5.26.2,<5.26.3.0a0|>=5.32.1,<5.33.0a0',build=_perl5]
conda-forge::perl=5.26.2
conda-forge|conda-forge::perl=5.26.2
bioconda::meme=5.1.1 -> perl-cgi -> perl[version='5.22.0.|>=5.22.0,<5.23.0|>=5.26.2,<5.27.0a0|>=5.32.1,<5.33.0a0|>=5.32.1,<6.0a0|>=5.32.1,<5.32.2.0a0|>=5.32.1,<5.32.2.0a0|5.22.2.1|>=5.22.0.1,<5.23.0a0|>=5.22,<6.0',build=_perl5]
bioconda::bowtie2=2.4.2 -> perl
bioconda::meme=5.1.1 -> perl[version='>=5.26.2,<5.26.3.0a0']

Package wheel conflicts for:
conda-forge::python=3.7.3 -> pip -> wheel
bioconda::rseqc=4.0.0 -> pip -> wheel

Package numexpr conflicts for:
bioconda::umi_tools=1.1.1 -> pandas[version='>=0.12.0'] -> numexpr[version='>=2.6.8|>=2.7.0|>=2.7.1|>=2.7.3']
bioconda::icount=2.0.0 -> pandas -> numexpr[version='>=2.6.8|>=2.7.0|>=2.7.1|>=2.7.3']

Package openblas conflicts for:
bioconda::piranha=1.2.1 -> gsl[version='>=2.4,<2.5.0a0'] -> openblas[version='0.2.19|0.2.19.|0.2.20|0.2.20.|>=0.3.3,<0.3.4.0a0']
bioconda::piranha=1.2.1 -> openblas[version='>=0.2.20,<0.2.21.0a0']

Package libiconv conflicts for:
bioconda::meme=5.1.1 -> libxml2[version='>=2.9.10,<2.10.0a0'] -> libiconv[version='>=1.15,<2.0.0a0|>=1.16,<2.0.0a0|>=1.17,<2.0a0|>=1.16,<2.0a0']
bioconda::fastqc=0.11.9 -> fontconfig -> libiconv[version='1.15|>=1.15,<2.0.0a0']

Package xorg-libxrender conflicts for:
bioconda::rseqc=4.0.0 -> r-base -> xorg-libxrender
bioconda::fastqc=0.11.9 -> openjdk[version='>=8.0.144'] -> xorg-libxrender

Package curl conflicts for:
bioconda::icount=2.0.0 -> bedtools[version='>=2.26.0'] -> curl[version='>=7.59.0,<8.0a0|>=7.64.0,<8.0a0|>=7.64.1,<8.0a0|>=7.87.0,<8.0a0|>=7.83.1,<8.0a0|>=7.81.0,<8.0a0|>=7.76.0,<8.0a0|>=7.71.1,<8.0a0|>=7.69.1,<8.0a0|>=7.75.0,<8.0a0']
bioconda::pureclip=1.3.1 -> bedtools -> curl[version='>=7.64.1,<8.0a0']
bioconda::rseqc=4.0.0 -> pybigwig -> curl[version='>=7.44.0,<8|>=7.59.0,<8.0a0|>=7.64.1,<8.0a0|>=7.87.0,<8.0a0|>=7.83.1,<8.0a0|>=7.81.0,<8.0a0|>=7.76.0,<8.0a0|>=7.71.1,<8.0a0|>=7.69.1,<8.0a0|>=7.64.0,<8.0a0|>=7.75.0,<8.0a0']

Package future conflicts for:
bioconda::multiqc=1.9 -> future[version='>0.14.0']
bioconda::umi_tools=1.1.1 -> future
bioconda::multiqc=1.9 -> lzstring -> future

Package numpy conflicts for:
bioconda::rseqc=4.0.0 -> numpy
bioconda::rseqc=4.0.0 -> bx-python -> numpy[version='1.10.|1.12.|>=1.19.5,<2.0a0|>=1.21.6,<2.0a0|>=1.17.5,<2.0a0|>=1.16.5,<2.0a0|>=1.20.0,<2.0a0|>=1.19.1,<2.0a0|>=1.18.5,<2.0a0|>=1.18.4,<2.0a0|>=1.16.4,<2.0a0|>=1.17.0,<2.0a0|>=1.16.3,<2.0a0|>=1.16.2,<2.0a0|>=1.16.1,<2.0a0|>=1.15.4,<2.0a0|>=1.15.2,<2.0a0|>=1.15.1,<2.0a0|1.15.|>=1.9.3,<2.0a0|1.13.']

Package isl conflicts for:
bioconda::preseq=2.0.3 -> libgcc -> isl
bioconda::piranha=1.2.1 -> libgcc -> isl

Package samtools conflicts for:
bioconda::rseqc=4.0.0 -> pysam -> samtools[version='1.3|1.3.1.|1.3.1|1.5.|1.6.|1.7|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']
bioconda::samtools=1.11
bioconda|bioconda::samtools=1.11
bioconda::icount=2.0.0 -> pybedtools -> samtools[version='1.3|1.3.1.|1.3.1|1.5.|1.6.|1.7|1.7.|1.9.|>=1.4.1|>=1.4.1,<1.5|>=1.4,<1.5|>=1.3,<1.4|>=1.3']The following specifications were found to be incompatible with your system:

feature:/linux-64::__glibc==2.31=0
feature:|@/linux-64::__glibc==2.31=0
bioconda::bedtools=2.29.2 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']
bioconda::bowtie2=2.4.2 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
bioconda::cutadapt=3.0 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
bioconda::meme=5.1.1 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
bioconda::multiqc=1.9 -> click -> __win
bioconda::paraclu=9 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
bioconda::piranha=1.2.1 -> libgcc-ng[version='>=10.3.0'] -> __glibc[version='>=2.17']
bioconda::preseq=2.0.3 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
bioconda::rseqc=4.0.0 -> libgcc-ng[version='>=10.3.0'] -> __glibc[version='>=2.17']
bioconda::samtools=1.11 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
bioconda::subread=2.0.1 -> libgcc-ng[version='>=10.3.0'] -> __glibc[version='>=2.17']
bioconda::umi_tools=1.1.1 -> libgcc-ng[version='>=9.3.0'] -> __glibc[version='>=2.17']
conda-forge::perl=5.26.2 -> libgcc-ng[version='>=7.5.0'] -> __glibc[version='>=2.17']
conda-forge::python=3.7.3 -> libgcc-ng[version='>=7.3.0'] -> __glibc[version='>=2.17']

Your installed version is: 2.31 `

this continues solving forever and eventually fails for good. This is the same case if i just try to recreate the conda env for the repo itself and if i follow the docs and first create the nextflow env then add the packages. I would also like to say, I know a container service would be optimal here, but my HPC (U Iowa) does not allow for the usage of such.

The text was updated successfully, but these errors were encountered:

JohnRachid added the bug Something isn't working label Apr 10, 2023

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Conda env fails to create #71

Conda env fails to create #71

JohnRachid commented Apr 10, 2023 •

edited

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Conda env fails to create #71

Conda env fails to create #71

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JohnRachid commented Apr 10, 2023 • edited Loading

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Description of the bug

Steps to reproduce

Expected behaviour

Log files

System

Nextflow Installation

Container engine

Additional context

JohnRachid commented Apr 10, 2023 •

edited

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