From 535294e399e5909c860b3be22fe4d9909bab10e6 Mon Sep 17 00:00:00 2001 From: Richard Neher Date: Tue, 9 Jan 2024 17:39:55 +0100 Subject: [PATCH] nextclade: edit dataset shortcuts --- nextclade/dataset_config/h1n1pdm/ha/CY121680/pathogen.json | 2 +- nextclade/dataset_config/h1n1pdm/ha/MW626062/pathogen.json | 2 +- nextclade/dataset_config/h1n1pdm/na/MW626056/pathogen.json | 2 +- nextclade/dataset_config/h3n2/ha/CY163680/pathogen.json | 2 +- nextclade/dataset_config/h3n2/ha/EPI1857216/pathogen.json | 2 +- nextclade/dataset_config/h3n2/na/EPI1857215/pathogen.json | 2 +- nextclade/dataset_config/vic/ha/KX058884/pathogen.json | 2 +- nextclade/dataset_config/vic/na/CY073894/pathogen.json | 2 +- 8 files changed, 8 insertions(+), 8 deletions(-) diff --git a/nextclade/dataset_config/h1n1pdm/ha/CY121680/pathogen.json b/nextclade/dataset_config/h1n1pdm/ha/CY121680/pathogen.json index b8cb10d8..589cc3e9 100644 --- a/nextclade/dataset_config/h1n1pdm/ha/CY121680/pathogen.json +++ b/nextclade/dataset_config/h1n1pdm/ha/CY121680/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h1n1pdm-ha-broad", + "flu_h1n1pdm_ha_broad", "nextstrain/flu/h1n1pdm/ha/california-7-2009" ], "aaMotifs": [ diff --git a/nextclade/dataset_config/h1n1pdm/ha/MW626062/pathogen.json b/nextclade/dataset_config/h1n1pdm/ha/MW626062/pathogen.json index b3e102df..7e0ea598 100644 --- a/nextclade/dataset_config/h1n1pdm/ha/MW626062/pathogen.json +++ b/nextclade/dataset_config/h1n1pdm/ha/MW626062/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h1n1pdm-ha", + "flu_h1n1pdm_ha", "nextstrain/flu/h1n1pdm", "nextstrain/flu/h1n1pdm/ha", "nextstrain/flu/h1n1pdm/ha/wisconsin-588-2019" diff --git a/nextclade/dataset_config/h1n1pdm/na/MW626056/pathogen.json b/nextclade/dataset_config/h1n1pdm/na/MW626056/pathogen.json index c90a8bd1..14e3f443 100644 --- a/nextclade/dataset_config/h1n1pdm/na/MW626056/pathogen.json +++ b/nextclade/dataset_config/h1n1pdm/na/MW626056/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h1n1pdm-na", + "flu_h1n1pdm_na", "nextstrain/flu/h1n1pdm/na", "nextstrain/flu/h1n1pdm/na/wisconsin-588-2019" ], diff --git a/nextclade/dataset_config/h3n2/ha/CY163680/pathogen.json b/nextclade/dataset_config/h3n2/ha/CY163680/pathogen.json index 9016a5dc..9bc0bc91 100644 --- a/nextclade/dataset_config/h3n2/ha/CY163680/pathogen.json +++ b/nextclade/dataset_config/h3n2/ha/CY163680/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h3n2-ha-broad", + "flu_h3n2_ha_broad", "nextstrain/flu/h3n2/ha/wisconsin-67-2005" ], "aaMotifs": [ diff --git a/nextclade/dataset_config/h3n2/ha/EPI1857216/pathogen.json b/nextclade/dataset_config/h3n2/ha/EPI1857216/pathogen.json index ec2a5e1c..913002c4 100644 --- a/nextclade/dataset_config/h3n2/ha/EPI1857216/pathogen.json +++ b/nextclade/dataset_config/h3n2/ha/EPI1857216/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h3n2-ha", + "flu_h3n2_ha", "nextstrain/flu/h3n2", "nextstrain/flu/h3n2/ha", "nextstrain/flu/h3n2/ha/darwin-6-2021" diff --git a/nextclade/dataset_config/h3n2/na/EPI1857215/pathogen.json b/nextclade/dataset_config/h3n2/na/EPI1857215/pathogen.json index 9bb62c02..a902b6c5 100644 --- a/nextclade/dataset_config/h3n2/na/EPI1857215/pathogen.json +++ b/nextclade/dataset_config/h3n2/na/EPI1857215/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-h3n2-na", + "flu_h3n2_na", "nextstrain/flu/h3n2/na", "nextstrain/flu/h3n2/na/darwin-6-2021" ], diff --git a/nextclade/dataset_config/vic/ha/KX058884/pathogen.json b/nextclade/dataset_config/vic/ha/KX058884/pathogen.json index 5a91345d..de8d5ea7 100644 --- a/nextclade/dataset_config/vic/ha/KX058884/pathogen.json +++ b/nextclade/dataset_config/vic/ha/KX058884/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-vic-ha", + "flu_vic_ha", "nextstrain/flu/vic", "nextstrain/flu/vic/ha", "nextstrain/flu/vic/ha/brisbane-60-2008" diff --git a/nextclade/dataset_config/vic/na/CY073894/pathogen.json b/nextclade/dataset_config/vic/na/CY073894/pathogen.json index f62d443a..e93ae9e1 100644 --- a/nextclade/dataset_config/vic/na/CY073894/pathogen.json +++ b/nextclade/dataset_config/vic/na/CY073894/pathogen.json @@ -2,7 +2,7 @@ "nucMutLabelMap": {}, "nucMutLabelMapReverse": {}, "shortcuts": [ - "flu-vic-na", + "flu_vic_na", "nextstrain/flu/vic/na", "nextstrain/flu/vic/na/brisbane-60-2008" ],