From 3d538e3a370b45a2543755fc2645f66fb4469a1f Mon Sep 17 00:00:00 2001
From: John Huddleston <huddlej@gmail.com>
Date: Fri, 15 Dec 2023 13:57:48 -0800
Subject: [PATCH] Add GitHub workflow to run nextflu-private builds

Adds a workflow to run nextflu-private builds through GitHub Actions, in
the first step toward automation of reports.
---
 .../workflows/run-nextflu-private-builds.yaml | 32 +++++++++++++++++++
 1 file changed, 32 insertions(+)
 create mode 100644 .github/workflows/run-nextflu-private-builds.yaml

diff --git a/.github/workflows/run-nextflu-private-builds.yaml b/.github/workflows/run-nextflu-private-builds.yaml
new file mode 100644
index 00000000..772e68d4
--- /dev/null
+++ b/.github/workflows/run-nextflu-private-builds.yaml
@@ -0,0 +1,32 @@
+name: Run Nextstrain builds for the nextflu-private group
+
+on:
+  workflow_dispatch:
+    inputs:
+      dockerImage:
+        description: "Specific container image to use for build (will override the default of `nextstrain build`)"
+        required: false
+        type: string
+
+jobs:
+  run-build:
+    permissions:
+      id-token: write
+    uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
+    secrets: inherit
+    with:
+      runtime: aws-batch
+      env: |
+        NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.dockerImage }}
+      run: |
+        nextstrain build \
+          --detach \
+          --cpus 36 \
+          --memory 72gib \
+          --env AWS_ACCESS_KEY_ID \
+          --env AWS_SECRET_ACCESS_KEY \
+          . \
+          all \
+          all_counts_of_recent_tips_by_clade \
+          -p \
+          --configfile profiles/nextflu-private.yaml