From 3b91f4f776be94d79653fe07539f0b1bd4b1364c Mon Sep 17 00:00:00 2001
From: marcDabad <marc.dabad@gmail.com>
Date: Sat, 29 Oct 2022 22:44:28 +0200
Subject: [PATCH] [ci skip] Merge PR 37080

Merge PR #37080, commits were:
 * Update meta.yaml
 * Update meta.yaml
 * Update meta.yaml
 * Merge branch 'master' into master
 * Merge branch 'master' into master
 * Merge pull request #8 from marcDabad/cvlr_package

new emas commit
 * new emas commit
 * Merge pull request #7 from marcDabad/cvlr_package

fix variable
 * fix variable
 * Merge branch 'master' into master
 * Merge pull request #6 from marcDabad/cvlr_package

gcc 2 cc
 * gcc 2 cc
 * Merge branch 'master' into master
 * Merge pull request #5 from marcDabad/cvlr_package

passes tests in local
 * passes tests in local
 * Merge branch 'master' into master
 * Merge pull request #4 from marcDabad/cvlr_package

cc
 * cc
 * Merge pull request #3 from marcDabad/cvlr_package

Cvlr package
 * Merge branch 'master' into master
 * Merge branch 'cvlr_package' of https://github.com/marcDabad/bioconda-recipes into cvlr_package
 * cvlr_recipe
 * Merge pull request #2 from marcDabad/cvlr_package

Cvlr package
 * Merge branch 'master' into cvlr_package
 * Merge pull request #1 from bioconda/master

update
 * cvlr_recipe
---
 recipes/cvlr/build.sh  |  8 ++++++++
 recipes/cvlr/meta.yaml | 42 ++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 50 insertions(+)
 create mode 100644 recipes/cvlr/build.sh
 create mode 100644 recipes/cvlr/meta.yaml

diff --git a/recipes/cvlr/build.sh b/recipes/cvlr/build.sh
new file mode 100644
index 0000000000000..d018c4ce446c2
--- /dev/null
+++ b/recipes/cvlr/build.sh
@@ -0,0 +1,8 @@
+export PREFIX=${PREFIX}
+make GCC=$CC --file=makefile-conda.mk
+
+cp cvlr-cluster ${PREFIX}/bin/.
+cp cvlr-meth-of-bam  ${PREFIX}/bin/.
+cp *py ${PREFIX}/bin/.
+
+
diff --git a/recipes/cvlr/meta.yaml b/recipes/cvlr/meta.yaml
new file mode 100644
index 0000000000000..ac5f78cb93855
--- /dev/null
+++ b/recipes/cvlr/meta.yaml
@@ -0,0 +1,42 @@
+{% set name = "cvlr" %}
+{% set version = "1.0" %}
+
+package:
+  name: "{{ name|lower }}"
+  version: "{{ version }}"
+
+source:
+  url: https://github.com/EmanueleRaineri/cvlr/archive/292190acc1bc1d954810d00be9a0c1fabd6a3646.zip
+  sha256: eaceaa530925cc42aafdda32d9d6dfb73c26cb6eccc06615947545a6126fb46a 
+build:
+  number: 0
+
+requirements:
+  build:
+    - make
+    - {{ compiler('c') }}
+  host:
+    - htslib
+    - libdeflate
+    - zlib
+    - curl
+    - xz
+    - openssl
+    - bzip2
+  run:
+    - python >=3
+    - numpy
+    - matplotlib-base
+
+test:
+  commands:
+    - which cvlr-cluster
+    - which cvlr-meth-of-bam
+    - cvlr-stats.py -h
+
+about:
+  home: https://github.com/EmanueleRaineri/releases/
+  license: MIT
+  license_family: MIT
+  summary: Clustering and Visualization of Long Reads
+