From aadaceeb8ad198a3ff1048483f8bbc0592f73e22 Mon Sep 17 00:00:00 2001 From: GRIGIS Antoine 239446 Date: Thu, 20 Jun 2024 15:54:53 +0200 Subject: [PATCH] Add site content. --- .gitignore | 1 + README.md | 81 +++--------- .../_collaborators/centrale-supelec.md | 9 -- _collections/_collaborators/kcl.md | 9 -- .../_collaborators/telecom-paristech.md | 9 -- _collections/_labs/ciel.md | 18 --- _collections/_labs/ciel_animal-facility.md | 19 --- _collections/_labs/ciel_animal-mri.md | 19 --- _collections/_labs/ciel_ciclops.md | 19 --- _collections/_labs/ciel_histology.md | 19 --- _collections/_labs/ciel_midas.md | 19 --- _collections/_labs/ciel_neurophysics.md | 20 --- _collections/_labs/gaia.md | 18 --- _collections/_labs/gaia_analyse.md | 25 ---- _collections/_labs/gaia_architecture.md | 35 ++++-- _collections/_labs/gaia_brainomics.md | 13 ++ _collections/_labs/gaia_cati.md | 14 +-- _collections/_labs/gaia_genetics.md | 13 -- _collections/_labs/gaia_it.md | 19 --- _collections/_labs/gaia_microstructure.md | 19 --- _collections/_labs/gaia_platform.md | 40 ++++++ _collections/_labs/gaia_signature.md | 50 ++++++++ _collections/_labs/gaia_signatures.md | 19 --- _collections/_labs/metric.md | 18 --- .../_labs/metric_acquisition-methodology.md | 21 ---- _collections/_labs/metric_instrumentation.md | 21 ---- _collections/_labs/metric_iseult.md | 23 ---- _collections/_labs/metric_mri.md | 36 ------ _collections/_news/2018_bibm.md | 5 - _collections/_news/2018_impac.md | 6 - _collections/_news/2019_isbi.md | 6 - _collections/_news/2019_jobs.md | 5 +- _collections/_news/2024_big2small.md | 5 + _collections/_opportunities/cdi_ia_2024.md | 11 ++ _collections/_opportunities/position1.md | 12 -- _collections/_opportunities/position2.md | 11 -- _collections/_opportunities/position3.md | 11 -- _collections/_opportunities/position4.md | 11 -- _collections/_people/ciel_b-larrat.md | 10 -- _collections/_people/ciel_d-lebihan.md | 10 -- _collections/_people/ciel_f-boumezbeur.md | 10 -- _collections/_people/ciel_l-ciobanu.md | 10 -- _collections/_people/ciel_s-meriaux.md | 10 -- _collections/_people/ciel_t-tsurugizawa.md | 10 -- .../{gaia_p-stokowski.md => gaia_a-gaudin.md} | 6 +- _collections/_people/gaia_a-gloaguen.md | 4 +- _collections/_people/gaia_a-grigis.md | 2 +- _collections/_people/gaia_a-mihailov.md | 4 +- _collections/_people/gaia_a-rebei.md | 4 +- _collections/_people/gaia_c-philippe.md | 2 +- _collections/_people/gaia_c-poupon .md | 10 -- _collections/_people/gaia_d-papadopoulos.md | 4 +- _collections/_people/gaia_e-duchesnay.md | 2 +- .../{gaia_f-poupon.md => gaia_i-uszynski.md} | 4 +- _collections/_people/gaia_l-megret.md | 4 +- _collections/_people/gaia_s-kakar.md | 4 +- _collections/_people/gaia_v-frouin.md | 2 +- _collections/_people/gaia_y-mekki.md | 4 +- _collections/_people/metric_a-amadon.md | 10 -- _collections/_people/metric_a-vignaud.md | 10 -- _collections/_people/metric_c-lerman.md | 33 ----- _collections/_people/metric_e-giacomini.md | 10 -- _collections/_people/metric_m-luong.md | 10 -- _collections/_people/metric_n-boulant.md | 10 -- _collections/_people/metric_v-gras.md | 10 -- _collections/_research/gaia_analyse_cosmic.md | 10 -- _collections/_research/gaia_analyse_pix.md | 10 -- _collections/_research/gaia_analyse_pynet.md | 10 -- .../_research/gaia_architecture_isomap.md | 10 ++ .../gaia_brainomics_languageh2gwas.md | 10 ++ _collections/_research/gaia_platform_bhb.md | 10 ++ .../_research/gaia_platform_surfify.md | 10 ++ .../_research/gaia_signature_big2small.md | 10 ++ _config.yml | 24 ++-- _includes/sidebar.html | 9 -- _layouts/page_lab.html | 42 +++++-- _layouts/page_select.html | 2 - _layouts/page_team.html | 18 ++- _sass/base/_typography.scss | 6 +- _sass/components/_list.scss | 2 +- _sass/components/_posts.scss | 2 +- _sass/layout/_header.scss | 8 +- _sass/layout/_sidebar.scss | 20 +-- _sass/libs/_skel.scss | 6 +- _sass/main.scss | 1 + _sass/main_style.scss | 115 ++++++++++++++++++ assets/css/main.scss | 2 +- images/banner.png | Bin 203736 -> 398648 bytes images/collaborators/centrale-supelec.png | Bin 207693 -> 0 bytes images/collaborators/collaborator1.jpg | Bin 4095 -> 0 bytes images/collaborators/collaborator2.png | Bin 22360 -> 0 bytes images/collaborators/collaborator3.jpg | Bin 5795 -> 0 bytes images/collaborators/kcl.png | Bin 4032 -> 0 bytes images/collaborators/telecom-paristech.png | Bin 3466 -> 0 bytes images/labs/architecture.png | Bin 0 -> 344483 bytes images/labs/{image.png => brainomics.png} | Bin images/labs/cati.jpg | Bin 0 -> 39213 bytes images/labs/metric.png | Bin 55447 -> 0 bytes .../labs/metric_acquisition_methodology.png | Bin 43607 -> 0 bytes images/labs/metric_instrumentation.png | Bin 43702 -> 0 bytes images/labs/metric_iseult.png | Bin 56087 -> 0 bytes images/labs/metric_iseult2.jpg | Bin 112989 -> 0 bytes images/labs/metric_mri.png | Bin 548010 -> 0 bytes images/labs/platform.png | Bin 0 -> 99006 bytes images/labs/signature.png | Bin 0 -> 165131 bytes images/opportunities/position.pdf | Bin 6862 -> 0 bytes images/people/avatar1.png | Bin 5714 -> 0 bytes images/people/avatar2.png | Bin 5359 -> 0 bytes images/people/c-lerman.jpg | Bin 138610 -> 0 bytes images/research/architecture_isomap.png | Bin 0 -> 441458 bytes images/research/brainomics_languageh2gwas.png | Bin 0 -> 1104901 bytes images/research/cosmic.jpg | Bin 26922 -> 0 bytes images/research/pix.png | Bin 128934 -> 0 bytes images/research/platform_bhb.jpg | Bin 0 -> 183365 bytes images/research/platform_surfify.png | Bin 0 -> 772479 bytes images/research/pynet.png | Bin 263022 -> 0 bytes images/research/signature_big2small.png | Bin 0 -> 250940 bytes index.md | 58 ++------- opportunities.md | 8 +- 119 files changed, 452 insertions(+), 869 deletions(-) delete mode 100755 _collections/_collaborators/centrale-supelec.md delete mode 100755 _collections/_collaborators/kcl.md delete mode 100755 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@@ _site/ .jekyll-cache/ .jekyll-metadata .~ +Gemfile* diff --git a/README.md b/README.md index 9f37578..4a1c573 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -![Build Static Pages](https://github.com/baobablab/baobab/workflows/Build%20Static%20Pages/badge.svg) +![Build Static Pages](https://github.com/neurospin/gaia/workflows/Build%20Static%20Pages/badge.svg) # Configuration @@ -19,75 +19,28 @@ Please look at the example and use the same keys. Note: For the research collection, you will have to add a new `research_.md` for new categories. -# (WIP) Editorial - Jekyll Theme - -A Jekyll version of the "Editorial" theme by [HTML5 UP](https://html5up.net/). - -![Editorial Theme](assets/images/screenshot.jpg "Editorial Theme") - -# How to Use - -For those unfamiliar with how Jekyll works, check out [https://jekyllrb.com/](https://jekyllrb.com/) for all the details, -or read up on just the basics of [front matter](https://jekyllrb.com/docs/frontmatter/), [writing posts](https://jekyllrb.com/docs/posts/), -and [creating pages](https://jekyllrb.com/docs/pages/). - -- **GitLab**: Simply fork this repository and start editing the `_config.yml` file! -- **GitHub**: Fork this reposity and create a branch named `gh-pages`, then start editing the `_config.yml` file! The `.gitlab-ci.yml` file is only needed for GitLab Pages, so feel free to delete this if you are using GitHub instead. - # Install local Jekyll: -- sudo apt -y install software-properties-common -- sudo apt-add-repository ppa:brightbox/ruby-ng -- sudo apt update -- sudo apt install ruby2.6 -- ruby --version -- sudo gem install jekyll bundler - -For Bibtex conversion: - -- install: pip install pybtex -- execute: pybtex-convert biblio.bib biblio.yaml - -# Credits +- sudo apt install ruby-dev +- echo '# Install Ruby Gems to ~/gems' >> ~/.bashrc +- echo 'export GEM_HOME="$HOME/gems"' >> ~/.bashrc +- echo 'export PATH="$HOME/gems/bin:$PATH"' >> ~/.bashrc +- source ~/.bashrc +- gem install jekyll bundler +- cd $MYPROJECT +- bundle init +- bundle add jekyll webrick +- bundle install +- bundle exec jekyll serve --livereload --port 8080 -Original README from HTML5 UP: -``` -Editorial by HTML5 UP -html5up.net | @ajlkn -Free for personal and commercial use under the CCA 3.0 license (html5up.net/license) - - -Say hello to Editorial, a blog/magazine-ish template built around a toggleable "locking" -sidebar (scroll down to see what I mean) and an accordion-style menu. Not the usual landing -page/portfolio affair you'd expect to see at HTML5 UP, but I figured for my 41st (!!!) -template I'd change it up a little. Enjoy :) - -Demo images* courtesy of Unsplash, a radtastic collection of CC0 (public domain) images -you can use for pretty much whatever. - -(* = not included) - -AJ -aj@lkn.io | @ajlkn - - -Credits: - - Demo Images: - Unsplash (unsplash.com) +For Bibtex conversion: - Icons: - Font Awesome (fortawesome.github.com/Font-Awesome) +- pip install pybtex +- pybtex-convert biblio.bib biblio.yaml - Other: - jQuery (jquery.com) - html5shiv.js (@afarkas @jdalton @jon_neal @rem) - Misc. Sass functions (@HugoGiraudel) - Respond.js (j.mp/respondjs) - Skel (skel.io) -``` +# Jekyll -Repository [Jekyll logo](https://github.com/jekyll/brand) icon licensed under a [Creative Commons Attribution 4.0 International License](http://choosealicense.com/licenses/cc-by-4.0/). +For those unfamiliar with how Jekyll works, check out [https://jekyllrb.com/](https://jekyllrb.com/) for all the details. diff --git a/_collections/_collaborators/centrale-supelec.md b/_collections/_collaborators/centrale-supelec.md deleted file mode 100755 index 7322ea2..0000000 --- a/_collections/_collaborators/centrale-supelec.md +++ /dev/null @@ -1,9 +0,0 @@ ---- -name: Centrale Supelec -subcat: academic -contact: -avatar: centrale-supelec.png -ext_url: https://www.centralesupelec.fr -joined: 2006 ---- - diff --git a/_collections/_collaborators/kcl.md b/_collections/_collaborators/kcl.md deleted file mode 100755 index 095ef42..0000000 --- a/_collections/_collaborators/kcl.md +++ /dev/null @@ -1,9 +0,0 @@ ---- -name: King's College London. Institute of Psychiatry. -subcat: academic -contact: -avatar: kcl.png -ext_url: https://www.kcl.ac.uk/ioppn/ -joined: 2014 ---- - diff --git a/_collections/_collaborators/telecom-paristech.md b/_collections/_collaborators/telecom-paristech.md deleted file mode 100755 index 105da8e..0000000 --- a/_collections/_collaborators/telecom-paristech.md +++ /dev/null @@ -1,9 +0,0 @@ ---- -name: Telecom Paritech -subcat: academic -contact: -avatar: telecom-paristech.png -ext_url: https://www.telecom-paristech.fr/ -joined: 2006 ---- - diff --git a/_collections/_labs/ciel.md b/_collections/_labs/ciel.md deleted file mode 100644 index 26ae415..0000000 --- a/_collections/_labs/ciel.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -layout: page_lab -title: CIEL -cat: ciel -subcat: lab -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Sebastien Meriaux -icon: image.png -added: 2020 ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_animal-facility.md b/_collections/_labs/ciel_animal-facility.md deleted file mode 100644 index 2e99397..0000000 --- a/_collections/_labs/ciel_animal-facility.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: ANIMAL FACILITY & WELFARE -cat: ciel -subcat: cell -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Sébastien Mériaux -icon: image.png -added: 2020 -permalink: cells/gaia-animal-facility.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_animal-mri.md b/_collections/_labs/ciel_animal-mri.md deleted file mode 100644 index 1a074bb..0000000 --- a/_collections/_labs/ciel_animal-mri.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: ANIMAL MRI PLATFORM -cat: ciel -subcat: cell -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Sébastien Mériaux -icon: image.png -added: 2020 -permalink: cells/ciel-animal-mri.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_ciclops.md b/_collections/_labs/ciel_ciclops.md deleted file mode 100644 index 4f2796f..0000000 --- a/_collections/_labs/ciel_ciclops.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: CICLOPS -cat: ciel -subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Fawzi Boumezbeur -icon: image.png -added: 2020 -permalink: teams/ciel-ciclops.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_histology.md b/_collections/_labs/ciel_histology.md deleted file mode 100644 index 39c343c..0000000 --- a/_collections/_labs/ciel_histology.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: HISTOLOGY, CELL CULTURE & CHEMISTRY -cat: ciel -subcat: cell -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Sébastien Mériaux -icon: image.png -added: 2020 -permalink: cells/ciel-histology-chemistry.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_midas.md b/_collections/_labs/ciel_midas.md deleted file mode 100644 index 296b938..0000000 --- a/_collections/_labs/ciel_midas.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: MIDAS -cat: ciel -subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Benoit Larrat -icon: image.png -added: 2020 -permalink: teams/ciel-midas.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/ciel_neurophysics.md b/_collections/_labs/ciel_neurophysics.md deleted file mode 100644 index effe758..0000000 --- a/_collections/_labs/ciel_neurophysics.md +++ /dev/null @@ -1,20 +0,0 @@ ---- -layout: page_team -title: NEUROPHYSICS -cat: ciel -subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Luisa Ciobanu -icon: image.png -added: 2020 -permalink: teams/ciel-neurophysics.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. - diff --git a/_collections/_labs/gaia.md b/_collections/_labs/gaia.md deleted file mode 100644 index c454d0f..0000000 --- a/_collections/_labs/gaia.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -layout: page_lab -title: GAIA -cat: gaia -subcat: lab -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Jean-François Mangin -icon: image.png -added: 2020 ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/gaia_analyse.md b/_collections/_labs/gaia_analyse.md deleted file mode 100644 index a27b35d..0000000 --- a/_collections/_labs/gaia_analyse.md +++ /dev/null @@ -1,25 +0,0 @@ ---- -layout: page_team -title: ANALYSE -cat: gaia -subcat: cell -headline: Advancement through Research Support -teasing: In neurosciences or psychiatry, the emergence of large multi-center population imaging (PI) studies raises numerous technological challenges. The NeuroSpin Anlysis Platform (NSAp) was initially designed to address NeuroSpin teams or external clients specific analysis needs, and is now able to handle the PI massive, heterogeneous and complex data from genetics, imaging, demographics, or clinical scores. The NSAp participates in the emergence of good practices for reproducible research. The proposed services cover the distributed data collection across different institutions and countries, the data standardization, the quality control, the data analysis, and the final data sharing. -leader: Antoine Grigis -icon: image.png -added: 2020 -permalink: cells/gaia-analyse.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Health research strategies using neuroimaging have shifted in recent years - the focus has moved from patient care only, to a combination of patient care and prevention. In the case of neurodegenerative and psychiatric diseases, this drives the creation of increasingly numerous massive imaging studies also known as Population Imaging (PI) surveys. It should be noticed that PI studies no longer consist of image data only. The recent wide availability of high-throughput genomics has augmented the subject data with genetics, epigenetics, and functional genomics. Likewise, the standardization of personality, demographics, and deficit tests in psychiatry facilitates the acquisition of clinical/behavioral records to enrich the subject data in large population studies. Moreover, PI studies now classically encompass more than one single imaging session per subject and cover multiple-time point heterogeneous experiments. Ultimately, these studies with complex imaging and extended data (PIx) require multi-center acquisitions to build a large target population. - -The NeuroSpin Anlysis Platform (NSAp) was initially designed to address NeuroSpin teams or external clients specific analysis needs, and is now able to handle the PI massive, heterogeneous and complex data from genetics, imaging, demographics, or clinical scores. The platform relies on the expertise of all NeuroSpin. The proposed services cover the distributed data collection across different institutions and countries, the data standardization, the quality control, the data analysis, and the final data sharing. - -The NSAp also participates in the emergence of good practices for reproducible research. - - diff --git a/_collections/_labs/gaia_architecture.md b/_collections/_labs/gaia_architecture.md index 62fbce8..ed1ca13 100644 --- a/_collections/_labs/gaia_architecture.md +++ b/_collections/_labs/gaia_architecture.md @@ -3,17 +3,38 @@ layout: page_team title: ARCHITECTURE cat: gaia subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. +headline: Deciphering the variability of the cortical folding pattern +teasing: Develops innovative methods to decipher the cortical folding pattern and perform automatic sulcus recognition, based on the use of machine learning and artificial intelligence techniques to infer dictionaries of tractable local polymorphisms supposed to provide a good proxy to the architectural segregation of populations. leader: Denis Rivière -icon: image.png +icon: architecture.png added: 2020 permalink: teams/gaia-architecture.html --- -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - Leader: - + + -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. + +
+For 30 years, we have been improvi​​ng our tools for automatic recognition of cortical sulci. The latest generation (L. Borne, B. Cagna, C. Fischer) relies on deep learning and distillation techniques to learn first a representation of the folding variability on a very large number of brains before exploiting a database of a few hundred brains whose sulci have been manually labeled. Sulcus morphometry is used in a multitude of collaborations to establish biomarkers, e.g., for pathologies of aging (WQ Shu-Quartier-Dit-Maire). But we are approaching the limits of the current anatomical nomenclature, which is not adapted to certain observed patterns. + +This is why for a few years we question the usual idea that an atlas can be adapted to any brain. We seek to infer with unsupervised deep learning approaches a dictionary of all the folding patterns (L. Guillon, A. Gaudin, J. Chavas). The goal is to be able to decompose any brain from this dictionary and potentially to highlight anomalies when an observed pattern is not listed. We use generative models and contrastive models to bias the dictionary towards folding patterns predictive of behavioral traits or developmental ​​​pathologies. + +We are also developing machine learning analyses to project the geometric variability of a sulcus or a pattern into a low-dimensional manifold, in order to quantify possible links with a pathology or a behavior (Z. Y. Sun, M. Pascucci). We have adapted these strategies to the analysis of the d​​evelopment of the folding of premature babies (H. de Vareille) and to the comparison of the folding of great apes with that of humans (O. Foubet). + +In the context of the Human Brain Project, we have established the first atlases of short-range connectivity through U-fibers (M. Guevara, N. Labra, N. Vindas) and new parcellations of the cortical surface integrating connectivity from diffusion MRI and cytoarchitectonicity (C. Langlet, XY Wang). Our ultimate goal is to link folding variability with connectivity and architectonics variability.​ diff --git a/_collections/_labs/gaia_brainomics.md b/_collections/_labs/gaia_brainomics.md new file mode 100644 index 0000000..c914601 --- /dev/null +++ b/_collections/_labs/gaia_brainomics.md @@ -0,0 +1,13 @@ +--- +layout: +title: BRAINOMICS +cat: gaia +subcat: team +headline: Imaging genetics for neuroscience +teasing: Develops innovative analysis methods to integrate brain imaging with genomics data, often combined to clinical or environmental data to determine how brain phenotypes variability originates in genetic and environmental variabilities. +site: https://brainomics.org +leader: Vincent Frouin +icon: brainomics.png +added: 2020 +permalink: teams/gaia-brainomics.html +--- diff --git a/_collections/_labs/gaia_cati.md b/_collections/_labs/gaia_cati.md index d84a3a0..26678f6 100644 --- a/_collections/_labs/gaia_cati.md +++ b/_collections/_labs/gaia_cati.md @@ -1,19 +1,13 @@ --- -layout: page_team +layout: title: CATI cat: gaia subcat: cell -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. +teasing: Founded in 2010, CATI, or Centre d'acquisition et de traitement des images in french, is a national service platform supporting more than 30 muticenter neuroimaging studies in the fields of neurodegenerative diseases and psychiatry (AD, Parkinson, Huntington, ALS, Bipolar, etc.) including several therapeutic trials. leader: Yann Cointepas -icon: image.png +site: http://www.cati-neuroimaging.com +icon: cati.jpg added: 2020 permalink: cells/gaia-cati.html --- -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/gaia_genetics.md b/_collections/_labs/gaia_genetics.md deleted file mode 100644 index d6e460f..0000000 --- a/_collections/_labs/gaia_genetics.md +++ /dev/null @@ -1,13 +0,0 @@ ---- -layout: -title: GENETICS -cat: gaia -subcat: team -headline: Imaging Genetics for Neurosciences -teasing: Made possible by a PIA grant, the Brainomics project was established to study associations between neuroimaging, genetics, and cognitive data. The aim of this project is to unveil such relationships using advanced data science tools as well as the knowledge and expertise stemming from our interdisciplinary members, most of whom are currently based in CEA Neurospin University Paris-Saclay. -site: https://brainomics.org -leader: Vincent Frouin -icon: image.png -added: 2020 -permalink: teams/genetics.html ---- diff --git a/_collections/_labs/gaia_it.md b/_collections/_labs/gaia_it.md deleted file mode 100644 index 8e48459..0000000 --- a/_collections/_labs/gaia_it.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: IT -cat: gaia -subcat: cell -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Pascal Stokowski -icon: image.png -added: 2020 -permalink: cells/gaia-it.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/gaia_microstructure.md b/_collections/_labs/gaia_microstructure.md deleted file mode 100644 index 4be9e67..0000000 --- a/_collections/_labs/gaia_microstructure.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: MICROSTRUCTURE -cat: gaia -subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Cyril Poupon -icon: image.png -added: 2020 -permalink: teams/gaia-microstructure.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/gaia_platform.md b/_collections/_labs/gaia_platform.md new file mode 100644 index 0000000..0912402 --- /dev/null +++ b/_collections/_labs/gaia_platform.md @@ -0,0 +1,40 @@ +--- +layout: page_team +title: Platform +cat: gaia +subcat: cell +teasing: Our goal is to meet the specific needs of NeuroSpin researchers for software development and analysis of heterogeneous brain data (neuroimaging, omics, clinical and behavioural data) used in the context of research conducted in clinical neuroscience, population imaging or cognitive neuroscience research. +leader: Antoine Grigis +icon: platform.png +added: 2020 +permalink: cells/gaia-platform.html +--- + + + + + +
+The mission of the cell is to meet the various needs of research teams in support of software development and brain data analysis, including: + +→The development of ad hoc software tools to meet the specific needs of research teams based in or using the NeuroSpin platform.
+→The development of brain data analysis pipelines based on standard tools used by the scientific community.
+→The development of webservices that allow remote control of the developed pipelines and the access to the data produced.
+→The deployment of these tools on the high performance computing resources of NeuroSpin (CPU and GPU clusters) and of the CEA Très Grand Centre de Calcul (via the EBRAINS/FENIX infrastructure).
+→The availability of a catalogue listing all the tools produced by the cell. More specifically, within the framework of various research projects conducted by the BAOBAB unit, the cell analyses population imaging data from small, medium and large monocentric, multicentric, national, European or international cohorts acquired on healthy subjects (IMAGEN, HCP, UK BioBank, …) or patients (R-link, EUAIMS, HBN, …) in order to develop population stratification approaches and thus be able to identify the predisposition of each individual to develop brain pathologies. This work is carried out in close collaboration with the UMS CATI. + + diff --git a/_collections/_labs/gaia_signature.md b/_collections/_labs/gaia_signature.md new file mode 100644 index 0000000..145c147 --- /dev/null +++ b/_collections/_labs/gaia_signature.md @@ -0,0 +1,50 @@ +--- +layout: page_team +title: SIGNATURE +cat: gaia +subcat: team +headline: Neuroimaging signatures of brain disorders +teasing: Develops cutting-edge machine learning and statistical models to uncover neural signatures that can stratify psychiatric disorders in the frame of large-scale national and European initiatives. +leader: Edouard Duchesnay +icon: signature.png +added: 2020 +permalink: teams/gaia-signature.html +--- + + + + + +
+Artificial Intelligence (AI) combined with neuroimaging opens up possibilities for personalized medicine. With this long-term objective, we developed four lines of research: + +→ MODELS TO PRODUCE INT​​​ERPRETABLE BRAIN SIGNATURES OF DISORDERS + +We investigated new predictive linear models that integrate prior biological knowledge to force the solution to adhere to biological priors, producing more plausible interpretable signatures. These models have been used to uncover an anatomical pattern of schizophrenia and a functional pattern for hallucinations. We embraced the applied mathematic challenge of creating scalable optimization solvers [for high-dimensional neuroimaging data while being flexible enough to integrate various priors. + +→ MODELS TO ​​BRIDGE THE GAP BETWEEN BIG AND SMALL DATA + +Thanks to the award of a Chair in AI (2020-2025), we proposed new weakly-supervised deep neural networks that are pre-trained on large datasets of controls, using auxiliary information such as “age” to improve the embedded representation of the general variability. Models are then transferred to smaller samples of patients to reveal the specific signal associated with psychiatric disorders. + +→ MODELS FOR PA​​​TIENTS’ STRATIFICATION ​​INTO HOMOGENEOUS SUBGROUPS + +With shared etiologies for individualized therapeutic strategy. + +→ UNLOCKING TH​​​E DATA ACCESS + +Learning models require collecting more and better data (wide and deep phenotyping). First, we tackled the “big data challenge” by aggregating open datasets (UKB, ABCD, HBN) into an interoperable database. Second, we actively contributed and will continue to play a major role to the emergence of deeply phenotyped datasets by leading the data management and analysis of several large European and national projects (PEPR PROPSY, RHUs FAME and PsyCARE, European project R-LiNK). ​ diff --git a/_collections/_labs/gaia_signatures.md b/_collections/_labs/gaia_signatures.md deleted file mode 100644 index b678e94..0000000 --- a/_collections/_labs/gaia_signatures.md +++ /dev/null @@ -1,19 +0,0 @@ ---- -layout: page_team -title: SIGNATURES -cat: gaia -subcat: team -headline: Research topic -teasing: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. -leader: Edouard Duchesnay -icon: image.png -added: 2020 -permalink: teams/gaia-signatures.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. diff --git a/_collections/_labs/metric.md b/_collections/_labs/metric.md deleted file mode 100644 index ed4ab5a..0000000 --- a/_collections/_labs/metric.md +++ /dev/null @@ -1,18 +0,0 @@ ---- -layout: page_lab -title: METRIC - Laboratory MEthodology and insTrumentation for human and non-human pRimate ultra-hIgh field magnetiC resonance imaging -cat: metric -subcat: lab -headline: Laboratory MEthodology and insTrumentation for human and non-human pRimate ultra-hIgh field magnetiC resonance imaging -teasing: The METRIC lab aims to propose imaging methods that take full advantage of the ultra-high-field MRI potential while limiting the adverse effects that appear at such strong magnetic field intensities. This activity aims first at providing relevant tools for clinical and neuroscientific research at 7T. It also seeks to prepare the operation and valuation of human 11.7T MRI by proposing innovative technical solutions. -leader: Alexandre Vignaud -icon: image.png -added: 2020 ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -The METRIC lab aims to propose imaging methods that take full advantage of the ultra-high-field MRI potential while limiting the adverse effects that appear at such strong magnetic field intensities. This activity aims first at providing relevant tools for clinical and neuroscientific research at 7T. It also seeks to prepare the operation and valuation of human 11.7T MRI by proposing innovative technical solutions. diff --git a/_collections/_labs/metric_acquisition-methodology.md b/_collections/_labs/metric_acquisition-methodology.md deleted file mode 100644 index 2d78263..0000000 --- a/_collections/_labs/metric_acquisition-methodology.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -layout: page_team -title: ACQUISITION METHODOLOGY -cat: metric -subcat: team -headline: MRI -teasing: Improvement of image quality and contrast in the context of applications for neuroscience and clinical applications at very high magnetic fields. This includes work on radio frequency pulses in parallel transmission, motion correction, field monitoring, anatomic, quantification, metabolic and BOLD imaging. -leader: Nicolas Boulant -icon: image.png -added: 2020 -permalink: teams/metric-acquisition-methodology.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Goals: Improvement of image quality and contrast in the context of applications for neuroscience and clinical applications at very high magnetic fields. This includes work on radio frequency pulses in parallel transmission, motion correction, field monitoring, anatomic, quantification, metabolic and BOLD imaging. - -Staff: Vincent Gras, Franck Mauconduit et Alexandre Vignaud. diff --git a/_collections/_labs/metric_instrumentation.md b/_collections/_labs/metric_instrumentation.md deleted file mode 100644 index 61a9271..0000000 --- a/_collections/_labs/metric_instrumentation.md +++ /dev/null @@ -1,21 +0,0 @@ ---- -layout: page_team -title: INSTRUMENTATION -cat: metric -subcat: team -headline: MRI hardware -teasing: The MRI instrumentation team includes the R&D activity around multiple-transmit and -receive RF coils, but also any hardware development necessary for the monitoring and correction of the UHF-MRI parameters relevant to improve the image and its contrast. This includes in particular the development of multi-coil shim arrays dedicated to the homogenization of the static field in the brain. -leader: Alexis Amadon -icon: image.png -added: 2020 -permalink: teams/metric-instrumentation.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Goals: The MRI instrumentation team includes the R&D activity around multiple-transmit and -receive RF coils, but also any hardware development necessary for the monitoring and correction of the UHF-MRI parameters relevant to improve the image and its contrast. This includes in particular the development of multi-coil shim arrays dedicated to the homogenization of the static field in the brain. - -Staff: Michel Luong (IRFU), Edouard Chazel & Eric Giacomini. diff --git a/_collections/_labs/metric_iseult.md b/_collections/_labs/metric_iseult.md deleted file mode 100644 index f010bf8..0000000 --- a/_collections/_labs/metric_iseult.md +++ /dev/null @@ -1,23 +0,0 @@ ---- -layout: page_team -title: Iseult Management -cat: metric -subcat: team -headline: 11.7T MRI -teasing: Managing the maintenance and scalability of the 11.7T Clinical MRI (with IRFU and Siemens Healthineers), obtaining authorizations from the competent authorities for employees, healthy volunteers and patients involved in the activities of this MRI (with UNIACT), and participating in the reception of the international teams that will collaborate with NeuroSpin on this imager. The 11.7T Magnet Maintenance Unit is part of the Exploitation Iseult group and aims to ensure the maximum availability of the 11.7T Iseult magnet for research activities, by carrying out preventive and corrective maintenance of the various equipment required for its operation (cryogenic plant, power supplies, instrumentation), by coordinating and participating in on-call duty, and by contributing to its upgradability. These missions are carried out in collaboration with Irfu experts. -leader: Cecile Rabrait-Lerman -icon: metric_iseult2.jpg -added: 2020 -permalink: teams/metric-iseult.html ---- - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -Goals: Managing the maintenance and scalability of the 11.7T Clinical MRI (with IRFU and Siemens Healthineers), obtaining authorizations from the competent authorities for employees, healthy volunteers and patients involved in the activities of this MRI (with UNIACT), and participating in the reception of the international teams that will collaborate with NeuroSpin on this imager. - -The 11.7T Magnet Maintenance Unit is part of the Exploitation Iseult group and aims to ensure the maximum availability of the 11.7T Iseult magnet for research activities, by carrying out preventive and corrective maintenance of the various equipment required for its operation (cryogenic plant, power supplies, instrumentation), by coordinating and participating in on-call duty, and by contributing to its upgradability. These missions are carried out in collaboration with Irfu experts. - -Staff: Frédéric Leprêtre, Cédric Bonnelye, Vincent Jannot (IRFU). diff --git a/_collections/_labs/metric_mri.md b/_collections/_labs/metric_mri.md deleted file mode 100644 index b6b62d6..0000000 --- a/_collections/_labs/metric_mri.md +++ /dev/null @@ -1,36 +0,0 @@ ---- -layout: page -title: HUMAN/PRIMATE MRI PLATFORM -cat: metric -subcat: cell -headline: -teasing: 7T MRI for the imaging of human and non-human primates - NeuroSpin's 7T clinical MRI is the first machine of this type installed in France in 2008. The counter-field of the magnet consists of three hundred tons of steel arranged around the magnet as passive shielding. It is a Siemens Healthineers imaging device operating with the SyngoMR VB17 user interface. -leader: Alexandre Vignaud -icon: metric_mri.png -added: 2020 -permalink: cells/metric-mri.html ---- - -{% assign research_sorted = site.research | where: "cat", "metric" | where: "subcat", "mri" | sort: "added" | reverse %} - -![image-title-here]({{site.url}}{{site.baseurl}}/images/labs/{{page.icon}}){:class="center"} - - Leader: - - -7T MRI for the imaging of human and non-human primates: NeuroSpin's 7T clinical MRI is the first machine of this type installed in France in 2008. The counter-field of the magnet consists of three hundred tons of steel arranged around the magnet as passive shielding. It is a Siemens Healthineers imaging device operating with the SyngoMR VB17 user interface. - -
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diff --git a/_collections/_news/2018_bibm.md b/_collections/_news/2018_bibm.md deleted file mode 100644 index 9fa8ac6..0000000 --- a/_collections/_news/2018_bibm.md +++ /dev/null @@ -1,5 +0,0 @@ ---- -title: Bob presented at BIBM Madrid. -desc: -date: 2018-12-01 ---- diff --git a/_collections/_news/2018_impac.md b/_collections/_news/2018_impac.md deleted file mode 100644 index f808ee3..0000000 --- a/_collections/_news/2018_impac.md +++ /dev/null @@ -1,6 +0,0 @@ ---- -title: Bob has been ranked in the IMPAC challenge. -desc: -ext_url: https://paris-saclay-cds.github.io/autism_challenge -date: 2018-09-01 ---- diff --git a/_collections/_news/2019_isbi.md b/_collections/_news/2019_isbi.md deleted file mode 100644 index fc299d4..0000000 --- a/_collections/_news/2019_isbi.md +++ /dev/null @@ -1,6 +0,0 @@ ---- -title: Bob has presented a poster at ISBI 2019 in Venice, Italy. -desc: -ext_url: https://biomedicalimaging.org/2019/ -date: 2019-03-01 ---- diff --git a/_collections/_news/2019_jobs.md b/_collections/_news/2019_jobs.md index 731cd59..ab1555f 100644 --- a/_collections/_news/2019_jobs.md +++ b/_collections/_news/2019_jobs.md @@ -1,6 +1,5 @@ --- -title: We are hiring post-docs and PhD candidates! -desc: +title: We are hiring a research in IA! page: opportunities/ -date: 2020-01-01 +date: 2024-09-01 --- diff --git a/_collections/_news/2024_big2small.md b/_collections/_news/2024_big2small.md new file mode 100644 index 0000000..b9d16e5 --- /dev/null +++ b/_collections/_news/2024_big2small.md @@ -0,0 +1,5 @@ +--- +title: New paper showing that combining transfer learning and deep ensemble achieves SOTA results on disease classification tasks. +ext_url: https://doi.org/10.1016/j.neuroimage.2024.120665 +date: 2024-07-01 +--- diff --git a/_collections/_opportunities/cdi_ia_2024.md b/_collections/_opportunities/cdi_ia_2024.md new file mode 100644 index 0000000..7d16306 --- /dev/null +++ b/_collections/_opportunities/cdi_ia_2024.md @@ -0,0 +1,11 @@ +--- +layout: +title: IA researcher in neuroimaging applied to precision psychiatry. +cat: gaia +subcat: signature +type: permanent +profile: PhD required. +contact: edouard.duchesnay@cea.fr +ext_url: https://www.emploi.cea.fr/Pages/Offre/detailoffre.aspx?idOffre=31315&idOrigine=513&LCID=1036&offerReference=2024-31315 +date: 2024-01-06 +--- diff --git a/_collections/_opportunities/position1.md b/_collections/_opportunities/position1.md deleted file mode 100644 index 929d68d..0000000 --- a/_collections/_opportunities/position1.md +++ /dev/null @@ -1,12 +0,0 @@ ---- -layout: page -title: Tile -cat: ciel -subcat: midas -type: internship -profile: Candidate profile (ciel/midas). -contact: last.first@cea.fr -pdf: position.pdf -date: 2020-03-01 ---- - diff --git a/_collections/_opportunities/position2.md b/_collections/_opportunities/position2.md deleted file mode 100644 index 5d5b87c..0000000 --- a/_collections/_opportunities/position2.md +++ /dev/null @@ -1,11 +0,0 @@ ---- -layout: page -title: Tile -cat: gaia -subcat: architecture -type: phd -profile: Candidate profile (gaia/architeccture). -contact: last.first@cea.fr -ext_url: https://github.com/baobablab/web-template -date: 2020-01-01 ---- diff --git a/_collections/_opportunities/position3.md b/_collections/_opportunities/position3.md deleted file mode 100644 index d141c22..0000000 --- a/_collections/_opportunities/position3.md +++ /dev/null @@ -1,11 +0,0 @@ ---- -layout: page -title: Tile -cat: gaia -subcat: genetics -type: postdoc -profile: Candidate profile (gaia/genetics). -contact: last.first@cea.fr -pdf: position.pdf -date: 2020-01-01 ---- diff --git a/_collections/_opportunities/position4.md b/_collections/_opportunities/position4.md deleted file mode 100644 index a2f3223..0000000 --- a/_collections/_opportunities/position4.md +++ /dev/null @@ -1,11 +0,0 @@ ---- -layout: page -title: Tile -cat: ciel -subcat: midas -type: postdoc -profile: Candidate profile (ciel/midas). -contact: last.first@cea.fr -pdf: position.pdf -date: 2020-03-01 ---- diff --git a/_collections/_people/ciel_b-larrat.md b/_collections/_people/ciel_b-larrat.md deleted file mode 100644 index 3e7d911..0000000 --- a/_collections/_people/ciel_b-larrat.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Benoit Larra -position: pi -cat: ciel -subcat: midas -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/ciel_d-lebihan.md b/_collections/_people/ciel_d-lebihan.md deleted file mode 100644 index a25fac5..0000000 --- a/_collections/_people/ciel_d-lebihan.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Denis Le Bihan -position: pi -cat: ciel -subcat: neurophysics -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/ciel_f-boumezbeur.md b/_collections/_people/ciel_f-boumezbeur.md deleted file mode 100644 index a7928b2..0000000 --- a/_collections/_people/ciel_f-boumezbeur.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Fawzi Boumezbeur -position: pi -cat: ciel -subcat: ciclops -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/ciel_l-ciobanu.md b/_collections/_people/ciel_l-ciobanu.md deleted file mode 100644 index 737dfd2..0000000 --- a/_collections/_people/ciel_l-ciobanu.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Luisa Ciobanu -position: pi -cat: ciel -subcat: neurophysics -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/ciel_s-meriaux.md b/_collections/_people/ciel_s-meriaux.md deleted file mode 100644 index a6d142d..0000000 --- a/_collections/_people/ciel_s-meriaux.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Sébastien Mériaux -position: pi -cat: ciel -subcat: midas -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/ciel_t-tsurugizawa.md b/_collections/_people/ciel_t-tsurugizawa.md deleted file mode 100644 index 9afff8e..0000000 --- a/_collections/_people/ciel_t-tsurugizawa.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Tomokazu Tsurugizawa -position: alumni -cat: ciel -subcat: neurophysics -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/gaia_p-stokowski.md b/_collections/_people/gaia_a-gaudin.md similarity index 51% rename from _collections/_people/gaia_p-stokowski.md rename to _collections/_people/gaia_a-gaudin.md index fe9fb23..9ee9a52 100644 --- a/_collections/_people/gaia_p-stokowski.md +++ b/_collections/_people/gaia_a-gaudin.md @@ -1,10 +1,10 @@ --- layout: -name: Pascal Stokowski +name: Aymerci Gaudin position: engineer cat: gaia -subcat: it +subcat: platform avatar: -joined: 2016 +joined: 2024 --- diff --git a/_collections/_people/gaia_a-gloaguen.md b/_collections/_people/gaia_a-gloaguen.md index 2ed3ca1..4ee5957 100644 --- a/_collections/_people/gaia_a-gloaguen.md +++ b/_collections/_people/gaia_a-gloaguen.md @@ -1,9 +1,9 @@ --- layout: name: Arnaud Gloaguen -position: gradstudent +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2016 --- diff --git a/_collections/_people/gaia_a-grigis.md b/_collections/_people/gaia_a-grigis.md index 3fa93d4..2a144d0 100644 --- a/_collections/_people/gaia_a-grigis.md +++ b/_collections/_people/gaia_a-grigis.md @@ -3,7 +3,7 @@ layout: name: Antoine Grigis position: engineer cat: gaia -subcat: analyse +subcat: platform site: https://agrigis.github.io avatar: a-grigis.jpg joined: 2016 diff --git a/_collections/_people/gaia_a-mihailov.md b/_collections/_people/gaia_a-mihailov.md index 357028e..dbf03f4 100644 --- a/_collections/_people/gaia_a-mihailov.md +++ b/_collections/_people/gaia_a-mihailov.md @@ -1,9 +1,9 @@ --- layout: name: Angeline Mihailov -position: gradstudent +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2016 --- diff --git a/_collections/_people/gaia_a-rebei.md b/_collections/_people/gaia_a-rebei.md index bdeffe2..8487460 100644 --- a/_collections/_people/gaia_a-rebei.md +++ b/_collections/_people/gaia_a-rebei.md @@ -1,9 +1,9 @@ --- layout: name: Amine Rebei -position: postdoc +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2017 --- diff --git a/_collections/_people/gaia_c-philippe.md b/_collections/_people/gaia_c-philippe.md index 59d7cca..aade2d7 100644 --- a/_collections/_people/gaia_c-philippe.md +++ b/_collections/_people/gaia_c-philippe.md @@ -3,7 +3,7 @@ layout: name: Cathy Philippe position: pi cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2006 --- diff --git a/_collections/_people/gaia_c-poupon .md b/_collections/_people/gaia_c-poupon .md deleted file mode 100644 index 1ad66bb..0000000 --- a/_collections/_people/gaia_c-poupon .md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Cyril Poupon -position: pi -cat: gaia -subcat: microstructure -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/gaia_d-papadopoulos.md b/_collections/_people/gaia_d-papadopoulos.md index 01b6e3a..d71ccd4 100644 --- a/_collections/_people/gaia_d-papadopoulos.md +++ b/_collections/_people/gaia_d-papadopoulos.md @@ -1,9 +1,9 @@ --- layout: name: Dimitri Papadopoulos -position: pi +position: engineer cat: gaia -subcat: genetics +subcat: platform avatar: joined: 2006 --- diff --git a/_collections/_people/gaia_e-duchesnay.md b/_collections/_people/gaia_e-duchesnay.md index a4f265c..907e7d8 100644 --- a/_collections/_people/gaia_e-duchesnay.md +++ b/_collections/_people/gaia_e-duchesnay.md @@ -3,7 +3,7 @@ layout: name: Edouard Duchesnay position: pi cat: gaia -subcat: signatures +subcat: signature avatar: e-duchesnay.png site: https://duchesnay.github.io joined: 2006 diff --git a/_collections/_people/gaia_f-poupon.md b/_collections/_people/gaia_i-uszynski.md similarity index 64% rename from _collections/_people/gaia_f-poupon.md rename to _collections/_people/gaia_i-uszynski.md index a3fc846..066c401 100644 --- a/_collections/_people/gaia_f-poupon.md +++ b/_collections/_people/gaia_i-uszynski.md @@ -1,7 +1,7 @@ --- layout: -name: Fabrice Poupon -position: pi +name: Ivy Uszynski +position: engineer cat: gaia subcat: architecture avatar: diff --git a/_collections/_people/gaia_l-megret.md b/_collections/_people/gaia_l-megret.md index 887e0d0..0c3e95f 100644 --- a/_collections/_people/gaia_l-megret.md +++ b/_collections/_people/gaia_l-megret.md @@ -1,9 +1,9 @@ --- layout: name: Lucile Mégret -position: postdoc +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2017 --- diff --git a/_collections/_people/gaia_s-kakar.md b/_collections/_people/gaia_s-kakar.md index a997155..191d61a 100644 --- a/_collections/_people/gaia_s-kakar.md +++ b/_collections/_people/gaia_s-kakar.md @@ -1,9 +1,9 @@ --- layout: name: Slim Karkar -position: postdoc +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2017 --- diff --git a/_collections/_people/gaia_v-frouin.md b/_collections/_people/gaia_v-frouin.md index 88c2e51..315668e 100644 --- a/_collections/_people/gaia_v-frouin.md +++ b/_collections/_people/gaia_v-frouin.md @@ -3,7 +3,7 @@ layout: name: Vincent Frouin position: pi cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2006 --- diff --git a/_collections/_people/gaia_y-mekki.md b/_collections/_people/gaia_y-mekki.md index a7dfbdd..bd6e5c6 100644 --- a/_collections/_people/gaia_y-mekki.md +++ b/_collections/_people/gaia_y-mekki.md @@ -1,9 +1,9 @@ --- layout: name: Yasmina Mekki -position: gradstudent +position: alumni cat: gaia -subcat: genetics +subcat: brainomics avatar: joined: 2016 --- diff --git a/_collections/_people/metric_a-amadon.md b/_collections/_people/metric_a-amadon.md deleted file mode 100644 index 16f2094..0000000 --- a/_collections/_people/metric_a-amadon.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Alexis Amadon -position: pi -cat: metric -subcat: instrumentation -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/metric_a-vignaud.md b/_collections/_people/metric_a-vignaud.md deleted file mode 100644 index eb866ef..0000000 --- a/_collections/_people/metric_a-vignaud.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Alexandre Vignaud -position: pi -cat: metric -subcat: acquisition-methodology -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/metric_c-lerman.md b/_collections/_people/metric_c-lerman.md deleted file mode 100644 index 18ebb2c..0000000 --- a/_collections/_people/metric_c-lerman.md +++ /dev/null @@ -1,33 +0,0 @@ ---- -layout: page -page: true -title: Cécile Rabrait-Lerman -name: Cecile Rabrait-Lerman -position: pi -cat: metric -subcat: iseult -avatar: c-lerman.jpg -joined: 2006 ---- - - -
- -
-
- Twitter
- Researcher in UHF MRI / non-proton imaging.
- Project Manager of the Iseult project / 11.7T Clinical MRI. -
- -
-

- -
-

Gallery:

-
- -
-
- - diff --git a/_collections/_people/metric_e-giacomini.md b/_collections/_people/metric_e-giacomini.md deleted file mode 100644 index 13f1a4e..0000000 --- a/_collections/_people/metric_e-giacomini.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Eric Giacomini -position: pi -cat: metric -subcat: instrumentation -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/metric_m-luong.md b/_collections/_people/metric_m-luong.md deleted file mode 100644 index e981910..0000000 --- a/_collections/_people/metric_m-luong.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Michel Luong -position: pi -cat: metric -subcat: instrumentation -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/metric_n-boulant.md b/_collections/_people/metric_n-boulant.md deleted file mode 100644 index 4f62a11..0000000 --- a/_collections/_people/metric_n-boulant.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Nicolas Boulant -position: pi -cat: metric -subcat: acquisition-methodology -avatar: -joined: 2006 ---- - diff --git a/_collections/_people/metric_v-gras.md b/_collections/_people/metric_v-gras.md deleted file mode 100644 index cc6ac67..0000000 --- a/_collections/_people/metric_v-gras.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -name: Vincent Gras -position: pi -cat: metric -subcat: acquisition-methodology -avatar: -joined: 2006 ---- - diff --git a/_collections/_research/gaia_analyse_cosmic.md b/_collections/_research/gaia_analyse_cosmic.md deleted file mode 100644 index ae304e8..0000000 --- a/_collections/_research/gaia_analyse_cosmic.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -title: COSMIC - Compressed Sensing for Magnetic Resonance Imaging & Cosmology -cat: gaia -subcat: analyse -headline: COSMIC -teasing: Most scientific developments rely on new acquisition systems which present improved resolution. In biomedical imaging, the advent of Magnetic Resonance Imaging (MRI) strongly impacted medicine and neuroscience while in astrophysics, gravitational waves have recently been discovered thanks to a new generation of instruments. In the COSMIC project, experts in MR and astrophysical image processing have joined their efforts to work on Compressed Sensing because (1)the image formation model (or forward modeling) is very similar, i.e. the data are collected in the Fourier (spatial frequency) domain, (2) the images are compressible in similar transform domains (e.g., wavelets), i.e. they can be well approximated by sparse decomposition in an appropriate transform domain, and (3) the same convex optimization algorithms can be deployed to perform nonlinear image reconstruction in both application fields. -icon: cosmic.jpg -added: 2020 ---- diff --git a/_collections/_research/gaia_analyse_pix.md b/_collections/_research/gaia_analyse_pix.md deleted file mode 100644 index 4215bdb..0000000 --- a/_collections/_research/gaia_analyse_pix.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -title: Population Imaging - Data Sharing -cat: gaia -subcat: analyse -headline: Population Imaging -teasing: In neurosciences or psychiatry, the emergence of large multi-center population imaging studies raises numerous technological challenges. From distributed data collection, across different institutions and countries, to final data publication service, one must handle the massive, heterogeneous, and complex data from genetics, imaging, demographics, or clinical scores. These data must be both efficiently obtained and downloadable. We have developed a Python solution, based on the CubicWeb open-source semantic framework, aimed at building population imaging study repositories. In addition, we focus on the tools developed around this framework to overcome the challenges associated with data sharing and collaborative requirements. We propose a set of three highly adaptive web services that transform the CubicWeb framework into a (1) multi-center upload platform, (2) collaborative quality assessment platform, and (3) publication platform endowed with massive-download capabilities. Two major European projects, IMAGEN and EU-AIMS, were supported by the described framework. -icon: pix.png -added: 2020 ---- diff --git a/_collections/_research/gaia_analyse_pynet.md b/_collections/_research/gaia_analyse_pynet.md deleted file mode 100644 index 91e090d..0000000 --- a/_collections/_research/gaia_analyse_pynet.md +++ /dev/null @@ -1,10 +0,0 @@ ---- -layout: -title: pynet - Helper Module for Deep Learning -cat: gaia -subcat: analyse -headline: pynet -teasing: Advances in Artificial Intelligence are intended to change the world of healthcare. In neurosciences or psychiatry, the emergence of large multi-center population imaging studies paves the way for new Artificial Intelligence techniques based on artificial neural networks (also known as deep learning). We present a Python solution, based on the PyTorch open-source deep learning framework, aimed at building modern deep learning models for medical applicattions based on artificial neural networks, specifically, Convolutional Neural Networks (CNN). -icon: pynet.png -added: 2020 ---- diff --git a/_collections/_research/gaia_architecture_isomap.md b/_collections/_research/gaia_architecture_isomap.md new file mode 100644 index 0000000..dc785b3 --- /dev/null +++ b/_collections/_research/gaia_architecture_isomap.md @@ -0,0 +1,10 @@ +--- +layout: +title: Comparative​​​ morphometry of the shape of the central sulcus using Isomap +cat: gaia +subcat: architecture +teasing: We examined here the morphological variability of the central sulcus in hominids, with a focus on the motor hand region, significant issue of human evolution. +icon: architecture_isomap.png +site: https://hal.science/hal-03824219 +added: 2022 +--- diff --git a/_collections/_research/gaia_brainomics_languageh2gwas.md b/_collections/_research/gaia_brainomics_languageh2gwas.md new file mode 100644 index 0000000..a9487fe --- /dev/null +++ b/_collections/_research/gaia_brainomics_languageh2gwas.md @@ -0,0 +1,10 @@ +--- +layout: +title: The genetic architecture of language functional connectivity +cat: gaia +subcat: brainomics +teasing: Using data from the UK Biobank, the world's largest general population imaging-genetics cohort, a collaboration led by a team at BAOBAB (NeuroSpin) has identified genes involved in the genetic architecture of functional language connectivity. These genes could be a priority for studying natural language. +icon: brainomics_languageh2gwas.png +site: https://hal.sorbonne-universite.fr/hal-03566120v1 +added: 2022 +--- diff --git a/_collections/_research/gaia_platform_bhb.md b/_collections/_research/gaia_platform_bhb.md new file mode 100644 index 0000000..78cfa4d --- /dev/null +++ b/_collections/_research/gaia_platform_bhb.md @@ -0,0 +1,10 @@ +--- +layout: +title: A Large-Scale Multi-Site Brain MRI Data-set for Age Prediction and Debiasing +cat: gaia +subcat: platform +teasing: BHB aggregates 10 publicly available datasets. Currently, it is focused only on Healthy Controls (HC) since the main challenge consists in modeling the (normal) brain development by building a robust brain age predictor. BHB contains N=5330 3D T1 brain MRI scans from HC acquired on 71 different acquisition sites coming from European-American, European, and Asian individuals. BHB provides the participants phenotype as well as site and scanner information associated with each image. Some widespread confounds are also proposed, such as the Total Intracranial Volume (TIV), the CerebroSpinal Fluid Volume (CSFV), the Gray Matter Volume (GMV), and the White Matter Volume (WMV). +icon: platform_bhb.jpg +site: https://hal.science/hal-04482833 +added: 2022 +--- diff --git a/_collections/_research/gaia_platform_surfify.md b/_collections/_research/gaia_platform_surfify.md new file mode 100644 index 0000000..8e37ce3 --- /dev/null +++ b/_collections/_research/gaia_platform_surfify.md @@ -0,0 +1,10 @@ +--- +layout: +title: Cortical brain surface and deep learning +cat: gaia +subcat: platform +teasing: Surfify is an open source Python module that simplifies the development of neural network architectures that relies on cortical surfaces. It provides common architectures, icosahedral mesh operators, and cortical augmentations. +icon: platform_surfify.png +site: https://hal.science/hal-04471607 +added: 2024 +--- diff --git a/_collections/_research/gaia_signature_big2small.md b/_collections/_research/gaia_signature_big2small.md new file mode 100644 index 0000000..6e8710b --- /dev/null +++ b/_collections/_research/gaia_signature_big2small.md @@ -0,0 +1,10 @@ +--- +layout: +title: Tranfer learning strategy to bridge the gap between big and small data +cat: gaia +subcat: signature +teasing: Exploring the potential of representation and transfer learning for anatomical neuroimaging - application to psychiatry. +icon: signature_big2small.png +site: https://hal.science/hal-04436585 +added: 2024 +--- diff --git a/_config.yml b/_config.yml index 5d3756f..f0f4033 100644 --- a/_config.yml +++ b/_config.yml @@ -1,12 +1,12 @@ # Site settings -title: BAOBAB -subtitle: Team slogan -baseurl: baobab -url: https://baobablab.github.io/ +title: GAIA laboratory +subtitle: +baseurl: #gaia +url: # https://baobablab.github.io/ # Contacts -email: jean-francois.mangin@cea.fr +email: edouard.duchesnay@cea.fr author: street_address: city: @@ -15,20 +15,16 @@ zip_code: country: France phone: -# Index -short_desc: A short description -long_desc: Difficulty on insensible reasonable in. From as went he they. Preference themselves me as thoroughly partiality considered on in estimating. Middletons acceptance discovered projecting so is so or. In or attachment inquietude remarkably comparison at an. Is surrounded prosperous stimulated am me discretion expression. But truth being state can she china widow. Occasional preference fat remarkably now projecting uncommonly dissimilar. Sentiments projection particular companions interested do at my delightful. Listening newspaper in advantage frankness to concluded unwilling. - # Expiration in days expiration_opportunities: 200 expiration_news: 300 # Social settings -500px_url: http://www.neurospin-wiki.org/pmwiki/Main/DirectionsToNeurospin -facebook_url: https://www.facebook.com/pages/NeuroSpin/171075046414933 -github_url: https://github.com/neurospin -twitter_url: https://twitter.com/neurospin_91 -youtube_url: https://www.youtube.com/CEASaclay +#500px_url: http://www.neurospin-wiki.org/pmwiki/Main/DirectionsToNeurospin +#facebook_url: https://www.facebook.com/pages/NeuroSpin/171075046414933 +#github_url: https://github.com/neurospin +#twitter_url: https://twitter.com/neurospin_91 +#youtube_url: https://www.youtube.com/CEASaclay map_url: https://www.google.fr/maps/@48.720535,2.1467526,16z?hl=en # Sass building diff --git a/_includes/sidebar.html b/_includes/sidebar.html index be6da9f..5fa5087 100644 --- a/_includes/sidebar.html +++ b/_includes/sidebar.html @@ -20,14 +20,6 @@

Menu

diff --git a/_layouts/page_lab.html b/_layouts/page_lab.html index 9805ad8..55162a9 100644 --- a/_layouts/page_lab.html +++ b/_layouts/page_lab.html @@ -4,10 +4,10 @@ html5up.net | @ajlkn Free for personal and commercial use under the CCA 3.0 license (html5up.net/license) --> -{% assign lab = page.url | split: "/" %} -{% assign lab = lab[-2] %} +{% assign lab = "gaia" %} {% assign teams_sorted = site.labs | where: "cat", lab | where: "subcat", "team" | sort: "title" %} {% assign cells_sorted = site.labs | where: "cat", lab | where: "subcat", "cell" | sort: "title" %} +{% assign research_sorted = site.research | sort: 'added' | reverse %} @@ -36,6 +36,7 @@

{{ page.title }}

{{ content }} +

Teams

@@ -60,7 +61,7 @@

{{ team.title }}: {{team.headline}}

"cea", 3, "", "{{team.leader}}")

-

{{ team.teasing }}...

+

{{ team.teasing }}

    {% if team.site %}
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    • @@ -74,6 +75,7 @@

    {{ team.title }}: {{team.headline}}

+

Cells

@@ -86,23 +88,49 @@

Cells

{% for cell in cells_sorted %}
- -

{{ cell.title }}: {{cell.headline}}

+ {% if cell.site %} + + {% else %} + + {% endif %} +

{{ cell.title }}

Leader:

-

{{ cell.teasing }}...

+

{{ cell.teasing }}

    -
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    • + {% if cell.site %} +
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    • + {% else %} +
  • More
    • + {% endif %}
{% endfor %}
+ + +
+
+

Gallery

+
+
+ {% for research in research_sorted limit: 6 %} +
+ +

{{ research.title }}

+

{{ research.teasing }}

+ +
+ {% endfor %} +
diff --git a/_layouts/page_select.html b/_layouts/page_select.html index 692e5fe..c57e4c7 100644 --- a/_layouts/page_select.html +++ b/_layouts/page_select.html @@ -11,14 +11,12 @@ {% assign labs_sorted = site.labs | sort: "cat" %} {% assign unique_labs = '' | split: ',' %} {% for lab in labs_sorted %} - {% if lab.subcat == "team" %} {% unless lab.cat == previous %} {% assign key = "~" | append: lab.cat %} {% assign unique_labs = unique_labs | push: key %} {% endunless %} {% assign unique_labs = unique_labs | push: lab.title %} {% assign previous = lab.cat %} - {% endif %} {% endfor %} -

- -

{{ lab.teasing }}...

- - - {% endfor %} - - - - -
-
-

Gallery

-
-
- {% for research in research_sorted limit: 6 %} -
- -

{{ research.title }}

-

{{ research.teasing }}...

-
- {% endfor %} -
+ + diff --git a/opportunities.md b/opportunities.md index 62be9c0..5e12d1d 100644 --- a/opportunities.md +++ b/opportunities.md @@ -6,16 +6,18 @@ expiration: 200 --- -Intership, PhD, PostDoc or engineer positions are offered in the project. Do not hesitate to contact us. +For a spontaneous application do not hesitate to contact us. {% assign today = site.time | date: '%s' %} {% assign jobs_sorted = site.opportunities | sort: 'date' | reverse %} -{% assign jobs_array = "phd|postdoc|internship" | split: "|" %} +{% assign jobs_array = "permanent|phd|postdoc|internship" | split: "|" %} {% for item in jobs_array %}
-{% if item == 'phd' %} +{% if item == 'permanent' %} +

Permanent position

+{% elsif item == 'phd' %}

PhD Scholarship

{% elsif item == 'postdoc' %}

PostDoctoral position