Update our OBI.json to .tsv script so it also reads the sample.json files (where the assessments / instruments are)

[alyssadai]

No description provided.

[alyssadai]

For reviewer:

Process for defining assessment columns from *_samples.json when generating the TSV:

• If sample has modality clinical, grab the instrument name. Then, find the matching subject (participant_id) for the sample in the existing TSV (created just from the *_participants.json) and add a new column for the instrument with a value of "completed" for that subject

[surchs]

Thanks! Where did you put the script you used to convert from OBI .json to .tsv?

With that, I think we can close 🧑‍🍳

[alyssadai]

@surchs, here's a private repo containing the conversion script and different versions of the data we've generated so far (just for tracking purposes):